Wall clock time and date at job start Sat Apr 11 2020 06:18:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43197 * 179.97438 * 2 1 4 4 C 1.39717 * 120.00216 * 49.22293 * 3 2 1 5 5 C 1.37592 * 120.00610 * 179.97438 * 4 3 2 6 6 C 1.39743 * 120.00080 * 359.97438 * 5 4 3 7 7 C 1.47685 * 120.00714 * 180.02562 * 6 5 4 8 8 O 1.21572 * 119.99983 * 359.97438 * 7 6 5 9 9 N 1.34778 * 119.99754 * 180.02562 * 7 6 5 10 10 C 1.46506 * 119.99658 * 179.97438 * 9 7 6 11 11 H 1.08993 * 110.64481 * 323.30201 * 10 9 7 12 12 C 1.54600 * 110.72252 * 86.45429 * 10 9 7 13 13 C 1.53994 * 105.14079 * 140.31268 * 12 10 9 14 14 N 1.47901 * 107.05483 * 1.22496 * 13 12 10 15 15 C 1.46906 * 110.99930 * 214.15316 * 14 13 12 16 16 C 1.50692 * 109.47142 * 176.64096 * 15 14 13 17 17 O 1.21293 * 120.00556 * 6.13526 * 16 15 14 18 18 N 1.34776 * 119.99831 * 186.13508 * 16 15 14 19 19 C 1.37101 * 120.00231 * 179.72332 * 18 16 15 20 20 H 1.08005 * 119.99897 * 0.27309 * 19 18 16 21 21 C 1.38949 * 120.00349 * 180.27930 * 19 18 16 22 22 N 1.31411 * 120.00101 * 359.97438 * 21 19 18 23 23 Si 1.86798 * 119.99852 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47128 * 90.00035 * 23 21 19 25 25 H 1.48503 * 109.46915 * 209.99855 * 23 21 19 26 26 H 1.48501 * 109.47466 * 329.99476 * 23 21 19 27 27 C 1.48530 * 105.82267 * 334.66664 * 14 13 12 28 28 C 1.39743 * 119.99014 * 0.27742 * 6 5 4 29 29 C 1.37606 * 119.99652 * 359.42214 * 28 6 5 30 30 H 4.51954 * 14.06551 * 359.97438 * 4 2 1 31 31 H 1.08001 * 119.98963 * 359.97438 * 4 3 2 32 32 H 1.08007 * 120.00185 * 180.02562 * 5 4 3 33 33 H 0.96999 * 120.00112 * 359.97438 * 9 7 6 34 34 H 1.09004 * 110.31015 * 21.39776 * 12 10 9 35 35 H 1.09003 * 110.30580 * 259.23266 * 12 10 9 36 36 H 1.08999 * 109.91719 * 241.87327 * 13 12 10 37 37 H 1.08997 * 109.91115 * 120.57337 * 13 12 10 38 38 H 1.09000 * 109.46979 * 56.63543 * 15 14 13 39 39 H 1.09002 * 109.46915 * 296.64168 * 15 14 13 40 40 H 0.97005 * 120.00053 * 0.02562 * 18 16 15 41 41 H 0.96999 * 120.00176 * 180.02562 * 22 21 19 42 42 H 1.09006 * 110.66713 * 157.64078 * 27 14 13 43 43 H 1.08998 * 110.67080 * 280.77302 * 27 14 13 44 44 H 1.07996 * 120.00599 * 179.72043 * 28 6 5 45 45 H 1.08002 * 120.00243 * 180.27974 * 29 28 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6059 0.0006 0.0000 4 6 3.3049 -0.7893 -0.9163 5 6 4.6808 -0.7883 -0.9167 6 6 5.3793 0.0032 -0.0010 7 6 6.8561 0.0047 -0.0017 8 8 7.4643 -0.6830 -0.7986 9 7 7.5296 0.7678 0.8819 10 6 8.9946 0.7689 0.8816 11 1 9.3796 -0.2265 0.6605 12 6 9.5407 1.8036 -0.1291 13 6 10.7526 2.4475 0.5695 14 7 10.8958 1.7875 1.8854 15 6 11.3847 2.7329 2.8980 16 6 11.4393 2.0484 4.2394 17 8 11.2116 0.8600 4.3237 18 7 11.7413 2.7567 5.3455 19 6 11.7855 2.1351 6.5668 20 1 11.5826 1.0770 6.6418 21 6 12.0912 2.8665 7.7080 22 7 12.3384 4.1539 7.6167 23 14 12.1520 2.0194 9.3717 24 1 13.5282 1.5214 9.6236 25 1 11.7733 2.9861 10.4335 26 1 11.2029 0.8773 9.3808 27 6 9.5428 1.2848 2.2358 28 6 4.6801 0.7892 0.9189 29 6 3.3041 0.7928 0.9150 30 1 -1.0501 -0.0009 -0.0003 31 1 2.7650 -1.4007 -1.6242 32 1 5.2211 -1.3987 -1.6253 33 1 7.0443 1.3162 1.5180 34 1 8.7837 2.5576 -0.3448 35 1 9.8533 1.3067 -1.0475 36 1 10.5785 3.5147 0.7064 37 1 11.6518 2.2884 -0.0255 38 1 10.7101 3.5872 2.9532 39 1 12.3826 3.0751 2.6238 40 1 11.9232 3.7072 5.2782 41 1 12.5522 4.6644 8.4133 42 1 9.6097 0.4716 2.9586 43 1 8.9200 2.0925 2.6204 44 1 5.2197 1.3975 1.6296 45 1 2.7636 1.4037 1.6230 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001316984120.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:06 Heat of formation + Delta-G solvation = 22.188253 kcal Electronic energy + Delta-G solvation = -27745.236983 eV Core-core repulsion = 23729.286793 eV Total energy + Delta-G solvation = -4015.950190 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.59623 -39.39201 -38.53953 -37.42147 -34.63816 -34.22455 -33.87578 -31.71931 -31.33503 -31.12026 -30.38874 -28.37247 -26.61603 -24.84741 -24.12895 -23.01395 -21.44744 -21.30614 -20.34030 -19.40447 -19.21382 -18.18539 -17.88830 -16.72304 -16.21353 -16.06640 -15.56251 -15.40043 -15.10711 -14.94875 -14.59421 -14.45482 -14.20724 -14.03064 -13.82334 -13.61830 -13.43009 -13.19527 -12.79687 -12.61680 -12.38122 -11.93785 -11.83116 -11.77945 -11.53960 -11.50827 -11.33756 -11.20855 -10.91848 -10.90803 -10.65140 -10.41707 -10.24824 -10.13867 -9.52194 -9.48751 -9.24897 -8.94988 -8.47199 -8.07741 -7.96835 -6.44923 -3.85783 0.12239 0.92914 2.17631 2.26542 2.89222 2.98764 3.15658 3.24693 3.30128 3.61406 3.75011 3.86378 4.03827 4.24548 4.37717 4.40744 4.50245 4.67923 4.77150 4.84675 5.00076 5.05857 5.08347 5.13132 5.22153 5.33741 5.40090 5.46783 5.54109 5.63974 5.77212 5.83985 5.86517 5.87903 5.90756 5.95349 6.03368 6.09117 6.23062 6.32524 6.39034 6.44510 7.03926 7.09360 7.16641 7.32403 7.52280 8.01563 8.02808 8.58016 9.14808 9.50576 10.02094 10.72697 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012316 B = 0.002077 C = 0.001854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2272.831159 B =13476.706256 C =15094.860035 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.156 4.156 3 C 0.031 3.969 4 C -0.104 4.104 5 C -0.058 4.058 6 C -0.123 4.123 7 C 0.558 3.442 8 O -0.533 6.533 9 N -0.715 5.715 10 C 0.140 3.860 11 H 0.105 0.895 12 C -0.139 4.139 13 C 0.034 3.966 14 N -0.490 5.490 15 C 0.038 3.962 16 C 0.441 3.559 17 O -0.578 6.578 18 N -0.563 5.563 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C 0.036 3.964 28 C -0.084 4.084 29 C -0.102 4.102 30 H 0.226 0.774 31 H 0.134 0.866 32 H 0.143 0.857 33 H 0.400 0.600 34 H 0.068 0.932 35 H 0.077 0.923 36 H 0.045 0.955 37 H 0.081 0.919 38 H 0.048 0.952 39 H 0.093 0.907 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.115 0.885 43 H 0.042 0.958 44 H 0.134 0.866 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.711 -1.484 -16.511 24.999 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.156 4.156 3 C 0.031 3.969 4 C -0.122 4.122 5 C -0.077 4.077 6 C -0.126 4.126 7 C 0.345 3.655 8 O -0.410 6.410 9 N -0.366 5.366 10 C 0.035 3.965 11 H 0.123 0.877 12 C -0.178 4.178 13 C -0.094 4.094 14 N -0.214 5.214 15 C -0.094 4.094 16 C 0.226 3.774 17 O -0.462 6.462 18 N -0.199 5.199 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.092 4.092 28 C -0.102 4.102 29 C -0.120 4.120 30 H 0.243 0.757 31 H 0.152 0.848 32 H 0.161 0.839 33 H 0.235 0.765 34 H 0.087 0.913 35 H 0.096 0.904 36 H 0.063 0.937 37 H 0.099 0.901 38 H 0.066 0.934 39 H 0.111 0.889 40 H 0.225 0.775 41 H 0.081 0.919 42 H 0.133 0.867 43 H 0.060 0.940 44 H 0.151 0.849 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -17.940 -3.051 -16.872 24.815 hybrid contribution -0.779 1.437 1.279 2.076 sum -18.719 -1.614 -15.592 24.416 Atomic orbital electron populations 1.24957 0.95811 0.98680 0.98763 1.20009 0.92019 1.01793 1.01753 1.16181 0.86740 0.97421 0.96549 1.21188 0.93763 0.98820 0.98442 1.21211 0.93374 0.96255 0.96848 1.20123 0.93153 1.00482 0.98865 1.18189 0.86906 0.79520 0.80856 1.90789 1.69727 1.41646 1.38873 1.45936 1.07455 1.46494 1.36717 1.22001 0.77936 1.00922 0.95648 0.87695 1.22802 0.97396 0.98378 0.99274 1.22924 0.98425 0.96623 0.91457 1.64489 1.23066 1.32869 1.00969 1.22101 1.01409 0.93519 0.92356 1.19705 0.84744 0.88009 0.84906 1.90495 1.54472 1.15220 1.86056 1.41867 1.60940 1.11175 1.05945 1.19701 1.44600 0.95789 0.82769 0.87878 1.25265 0.97157 0.95514 1.00000 1.69610 1.47571 1.06363 1.30713 0.85858 0.78754 0.78783 0.80904 1.20366 1.20948 1.19421 1.23542 0.88727 1.01069 0.95871 1.21270 0.94135 0.97529 0.97312 1.21147 0.93771 0.98745 0.98357 0.75745 0.84828 0.83923 0.76464 0.91308 0.90426 0.93691 0.90057 0.93370 0.88898 0.77486 0.91856 0.86744 0.93994 0.84864 0.84806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.05 19.25 29.55 0.57 -0.48 16 2 C -0.16 -1.31 13.23 -38.84 -0.51 -1.82 16 3 C 0.03 0.27 5.73 -106.87 -0.61 -0.34 16 4 C -0.10 -0.86 9.73 -39.26 -0.38 -1.25 16 5 C -0.06 -0.55 9.57 -39.25 -0.38 -0.92 16 6 C -0.12 -1.25 5.88 -104.91 -0.62 -1.87 16 7 C 0.56 6.93 7.76 -12.40 -0.10 6.83 16 8 O -0.53 -8.37 16.06 5.30 0.09 -8.28 16 9 N -0.71 -8.02 5.09 -52.99 -0.27 -8.29 16 10 C 0.14 1.86 3.35 -66.06 -0.22 1.64 16 11 H 0.11 1.60 7.69 -51.93 -0.40 1.21 16 12 C -0.14 -1.65 6.67 -25.37 -0.17 -1.82 16 13 C 0.03 0.43 6.70 -2.75 -0.02 0.41 16 14 N -0.49 -7.98 5.11 -231.89 -1.18 -9.16 16 15 C 0.04 0.66 5.30 -4.98 -0.03 0.63 16 16 C 0.44 10.11 7.41 -10.99 -0.08 10.02 16 17 O -0.58 -15.12 13.87 5.55 0.08 -15.04 16 18 N -0.56 -13.91 5.29 -10.96 -0.06 -13.97 16 19 C -0.30 -8.17 9.68 -14.93 -0.14 -8.32 16 20 H 0.10 2.96 7.16 -52.48 -0.38 2.58 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.13 13.05 55.50 0.72 -23.41 16 23 Si 0.93 20.78 29.55 -169.99 -5.02 15.75 16 24 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 25 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 C 0.04 0.56 5.19 -1.90 -0.01 0.55 16 28 C -0.08 -0.69 9.52 -39.25 -0.37 -1.06 16 29 C -0.10 -0.82 9.73 -39.26 -0.38 -1.20 16 30 H 0.23 0.55 7.80 -54.09 -0.42 0.13 16 31 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 32 H 0.14 1.31 7.64 -52.48 -0.40 0.91 16 33 H 0.40 3.55 6.54 -40.82 -0.27 3.28 16 34 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 35 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 36 H 0.04 0.51 7.68 -51.93 -0.40 0.12 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.05 0.75 7.98 -51.93 -0.41 0.33 16 39 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 40 H 0.39 9.28 7.90 -40.82 -0.32 8.96 16 41 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 42 H 0.11 2.16 6.43 -51.93 -0.33 1.83 16 43 H 0.04 0.61 7.88 -51.93 -0.41 0.20 16 44 H 0.13 0.81 6.38 -52.49 -0.34 0.48 16 45 H 0.13 0.84 8.06 -52.49 -0.42 0.41 16 LS Contribution 387.54 15.07 5.84 5.84 Total: -1.00 -33.29 387.54 -9.11 -42.40 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -5.75 Total: 12.65 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -3.55 Total: 1.51 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: -0.79 Total: -54.83 kcal Atomic # 8 Polarization: -23.48 SS G_CDS: 0.16 Total: -23.32 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.29 -9.11 -42.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001316984120.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.586 kcal (2) G-P(sol) polarization free energy of solvation -33.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds