Wall clock time and date at job start Sat Apr 11 2020 06:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.39718 * 119.99121 * 224.58650 * 3 2 1 5 5 C 1.37599 * 119.99886 * 180.02562 * 4 3 2 6 6 C 1.39751 * 119.99513 * 0.26966 * 5 4 3 7 7 C 1.47690 * 119.99998 * 179.70261 * 6 5 4 8 8 O 1.21565 * 120.00381 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99523 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47176 * 174.95376 * 10 9 7 12 12 N 1.46895 * 115.55111 * 272.74604 * 11 10 9 13 13 C 1.46908 * 111.00178 * 294.31145 * 12 11 10 14 14 C 1.50696 * 109.47141 * 177.89563 * 13 12 11 15 15 O 1.21288 * 120.00258 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99692 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99681 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00167 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99922 * 179.97438 * 17 16 14 20 20 N 1.31407 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47454 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46824 * 120.00588 * 21 19 17 24 24 H 1.48499 * 109.47149 * 239.99939 * 21 19 17 25 25 C 1.53004 * 117.49600 * 127.07546 * 11 10 9 26 26 C 1.52996 * 117.49815 * 58.41714 * 11 10 9 27 27 C 1.39745 * 119.99146 * 359.47613 * 6 5 4 28 28 C 1.37597 * 119.99777 * 0.50175 * 27 6 5 29 29 H 4.51951 * 14.06507 * 359.97438 * 4 2 1 30 30 H 1.07995 * 120.00159 * 359.97438 * 4 3 2 31 31 H 1.07994 * 120.00095 * 180.02562 * 5 4 3 32 32 H 0.96996 * 120.00355 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.47556 * 294.96132 * 10 9 7 34 34 H 1.09006 * 109.46809 * 54.95424 * 10 9 7 35 35 H 1.00905 * 111.00157 * 170.36114 * 12 11 10 36 36 H 1.09005 * 109.46625 * 297.89785 * 13 12 11 37 37 H 1.09000 * 109.46866 * 57.89284 * 13 12 11 38 38 H 0.96998 * 120.00127 * 0.02562 * 16 14 13 39 39 H 0.96996 * 120.00413 * 179.97438 * 20 19 17 40 40 H 1.08998 * 117.49765 * 0.02562 * 25 11 10 41 41 H 1.09004 * 117.49796 * 145.02194 * 25 11 10 42 42 H 1.08997 * 117.50264 * 214.97575 * 26 11 10 43 43 H 1.09000 * 117.49813 * 359.97438 * 26 11 10 44 44 H 1.08001 * 119.99877 * 180.23545 * 27 6 5 45 45 H 1.08001 * 119.99914 * 179.74845 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3041 0.8628 0.8495 5 6 4.6801 0.8639 0.8492 6 6 5.3792 0.0067 -0.0048 7 6 6.8561 0.0125 -0.0099 8 8 7.4636 0.7625 0.7292 9 7 7.5303 -0.8139 -0.8339 10 6 8.9953 -0.8086 -0.8386 11 6 9.5064 -1.9165 -1.7619 12 7 9.6645 -3.2375 -1.1392 13 6 10.7181 -3.2145 -0.1158 14 6 10.8158 -4.5701 0.5352 15 8 10.0804 -5.4673 0.1812 16 7 11.7210 -4.7857 1.5102 17 6 11.8102 -6.0191 2.1021 18 1 11.1548 -6.8178 1.7874 19 6 12.7439 -6.2417 3.1069 20 7 13.5409 -5.2698 3.4901 21 14 12.8649 -7.9220 3.9138 22 1 11.8636 -8.8357 3.3075 23 1 14.2278 -8.4739 3.7060 24 1 12.6001 -7.7925 5.3693 25 6 10.5084 -1.5235 -2.8493 26 6 9.0669 -1.8739 -3.2267 27 6 4.6808 -0.8593 -0.8505 28 6 3.3049 -0.8605 -0.8497 29 1 -1.0500 -0.0002 -0.0009 30 1 2.7637 1.5289 1.5057 31 1 5.2196 1.5300 1.5061 32 1 7.0456 -1.4122 -1.4238 33 1 9.3541 0.1566 -1.1959 34 1 9.3625 -0.9807 0.1733 35 1 9.8509 -3.9449 -1.8342 36 1 11.6717 -2.9655 -0.5816 37 1 10.4758 -2.4658 0.6384 38 1 12.3094 -4.0683 1.7931 39 1 14.1924 -5.4250 4.1917 40 1 10.8038 -0.4759 -2.9066 41 1 11.2847 -2.2454 -3.1030 42 1 8.8954 -2.8262 -3.7286 43 1 8.4133 -1.0570 -3.5326 44 1 5.2211 -1.5245 -1.5078 45 1 2.7651 -1.5269 -1.5062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001323508365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:13 Heat of formation + Delta-G solvation = 39.270632 kcal Electronic energy + Delta-G solvation = -27597.158686 eV Core-core repulsion = 23581.949244 eV Total energy + Delta-G solvation = -4015.209442 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.48687 -39.26039 -38.43617 -37.74049 -34.48510 -34.12878 -33.96273 -32.63399 -31.41315 -31.18800 -30.83387 -27.44265 -26.55762 -24.44967 -24.08960 -22.90681 -22.62989 -20.79158 -19.93029 -19.35319 -19.24288 -18.03819 -17.88347 -16.54312 -16.40213 -16.04677 -15.63630 -15.49412 -15.02455 -14.96714 -14.87900 -14.49278 -14.10950 -14.02273 -13.95108 -13.59744 -13.51617 -13.26648 -12.73557 -12.59186 -12.49051 -12.21568 -11.78234 -11.73390 -11.65080 -11.48574 -11.46946 -11.11925 -10.88983 -10.85956 -10.40576 -10.34340 -10.22354 -10.03803 -9.52490 -9.41711 -9.21864 -8.88128 -8.46153 -8.10161 -7.96663 -6.41853 -3.82782 0.19086 0.99955 2.23996 2.31592 2.88379 3.06050 3.16344 3.26990 3.33996 3.58572 3.68241 3.80628 3.88714 4.03399 4.24292 4.41022 4.45494 4.48819 4.56657 4.63679 4.79703 4.91894 5.10198 5.11844 5.14487 5.24799 5.41001 5.45224 5.51294 5.54998 5.60599 5.67870 5.72680 5.83244 5.90582 5.91268 5.96317 6.00117 6.01865 6.24266 6.28206 6.44006 7.08961 7.09254 7.37121 7.52019 7.55238 8.05620 8.07313 8.60314 9.17383 9.53567 10.04516 10.75836 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.002151 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.892570 B =13014.075559 C =14264.352210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.154 4.154 3 C 0.030 3.970 4 C -0.104 4.104 5 C -0.058 4.058 6 C -0.121 4.121 7 C 0.556 3.444 8 O -0.537 6.537 9 N -0.711 5.711 10 C 0.166 3.834 11 C 0.037 3.963 12 N -0.626 5.626 13 C 0.050 3.950 14 C 0.441 3.559 15 O -0.584 6.584 16 N -0.562 5.562 17 C -0.299 4.299 18 H 0.104 0.896 19 C 0.022 3.978 20 N -0.900 5.900 21 Si 0.930 3.070 22 H -0.268 1.268 23 H -0.282 1.282 24 H -0.281 1.281 25 C -0.205 4.205 26 C -0.168 4.168 27 C -0.082 4.082 28 C -0.102 4.102 29 H 0.226 0.774 30 H 0.134 0.866 31 H 0.143 0.857 32 H 0.403 0.597 33 H 0.074 0.926 34 H 0.083 0.917 35 H 0.354 0.646 36 H 0.048 0.952 37 H 0.088 0.912 38 H 0.393 0.607 39 H 0.271 0.729 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.100 0.900 44 H 0.134 0.866 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.789 14.339 -12.195 25.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.154 4.154 3 C 0.030 3.970 4 C -0.122 4.122 5 C -0.077 4.077 6 C -0.124 4.124 7 C 0.343 3.657 8 O -0.415 6.415 9 N -0.363 5.363 10 C 0.042 3.958 11 C -0.056 4.056 12 N -0.257 5.257 13 C -0.082 4.082 14 C 0.226 3.774 15 O -0.468 6.468 16 N -0.199 5.199 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.541 5.541 21 Si 0.757 3.243 22 H -0.192 1.192 23 H -0.208 1.208 24 H -0.207 1.207 25 C -0.245 4.245 26 C -0.206 4.206 27 C -0.101 4.101 28 C -0.120 4.120 29 H 0.242 0.758 30 H 0.151 0.849 31 H 0.161 0.839 32 H 0.239 0.761 33 H 0.092 0.908 34 H 0.101 0.899 35 H 0.174 0.826 36 H 0.066 0.934 37 H 0.106 0.894 38 H 0.226 0.774 39 H 0.081 0.919 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.119 0.881 44 H 0.152 0.848 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.158 14.317 -11.279 25.727 hybrid contribution 0.936 -0.732 -0.209 1.206 sum -17.222 13.585 -11.489 24.762 Atomic orbital electron populations 1.24941 0.95799 0.98849 0.98835 1.20022 0.92023 1.01675 1.01685 1.16178 0.86712 0.97017 0.97101 1.21183 0.93770 0.98660 0.98604 1.21215 0.93375 0.96708 0.96414 1.20103 0.93118 0.99523 0.99692 1.18183 0.86999 0.80436 0.80104 1.90792 1.69797 1.40515 1.40423 1.45808 1.07354 1.41128 1.41996 1.20765 0.79182 0.95621 1.00241 1.21865 1.03311 0.91877 0.88543 1.59849 1.47247 1.02165 1.16455 1.21694 0.92968 0.98149 0.95427 1.19748 0.84299 0.89221 0.84124 1.90522 1.45167 1.45291 1.65860 1.41859 1.32281 1.13343 1.32387 1.19747 1.18003 0.89418 1.15712 0.87862 1.25276 0.95974 0.99402 0.97332 1.69617 1.21760 1.32279 1.30484 0.85797 0.78118 0.81615 0.78793 1.19225 1.20774 1.20711 1.23661 0.93099 1.02993 1.04784 1.23167 0.97950 1.03627 0.95860 1.21264 0.94102 0.97155 0.97580 1.21126 0.93770 0.98468 0.98668 0.75777 0.84855 0.83939 0.76078 0.90835 0.89872 0.82560 0.93414 0.89399 0.77423 0.91888 0.88348 0.88359 0.88076 0.88126 0.84823 0.84852 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 19.25 29.55 0.57 -0.56 16 2 C -0.15 -1.37 13.23 -38.83 -0.51 -1.88 16 3 C 0.03 0.28 5.73 -106.86 -0.61 -0.33 16 4 C -0.10 -0.94 9.73 -39.26 -0.38 -1.32 16 5 C -0.06 -0.60 9.58 -39.25 -0.38 -0.97 16 6 C -0.12 -1.31 5.88 -104.91 -0.62 -1.93 16 7 C 0.56 7.21 7.77 -12.40 -0.10 7.12 16 8 O -0.54 -8.80 16.33 5.31 0.09 -8.71 16 9 N -0.71 -7.98 5.42 -61.30 -0.33 -8.31 16 10 C 0.17 1.98 5.74 -4.04 -0.02 1.96 16 11 C 0.04 0.42 1.90 -131.61 -0.25 0.17 16 12 N -0.63 -9.51 6.26 -101.22 -0.63 -10.14 16 13 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 14 C 0.44 10.36 7.82 -10.99 -0.09 10.27 16 15 O -0.58 -15.73 15.82 5.55 0.09 -15.64 16 16 N -0.56 -14.31 5.29 -10.96 -0.06 -14.37 16 17 C -0.30 -8.39 9.68 -14.93 -0.14 -8.53 16 18 H 0.10 3.04 7.16 -52.48 -0.38 2.66 16 19 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 21 Si 0.93 21.18 29.55 -169.99 -5.02 16.15 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.89 16 24 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 25 C -0.20 -1.96 10.07 -26.69 -0.27 -2.23 16 26 C -0.17 -1.47 9.56 -26.70 -0.26 -1.73 16 27 C -0.08 -0.72 9.52 -39.25 -0.37 -1.09 16 28 C -0.10 -0.86 9.73 -39.27 -0.38 -1.25 16 29 H 0.23 0.63 7.80 -54.09 -0.42 0.21 16 30 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 31 H 0.14 1.43 7.64 -52.49 -0.40 1.03 16 32 H 0.40 3.71 6.18 -40.82 -0.25 3.46 16 33 H 0.07 0.81 7.89 -51.93 -0.41 0.40 16 34 H 0.08 1.19 6.46 -51.93 -0.34 0.86 16 35 H 0.35 5.47 8.39 -39.29 -0.33 5.14 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.09 1.48 6.55 -51.93 -0.34 1.14 16 38 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 39 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 40 H 0.10 0.84 8.04 -51.93 -0.42 0.42 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 44 H 0.13 0.88 6.38 -52.49 -0.34 0.55 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -34.33 397.14 -8.71 -43.05 By element: Atomic # 1 Polarization: 22.51 SS G_CDS: -5.61 Total: 16.90 kcal Atomic # 6 Polarization: 2.96 SS G_CDS: -3.94 Total: -0.98 kcal Atomic # 7 Polarization: -56.46 SS G_CDS: -0.30 Total: -56.76 kcal Atomic # 8 Polarization: -24.53 SS G_CDS: 0.17 Total: -24.35 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.33 -8.71 -43.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323508365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.317 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.047 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds