Wall clock time and date at job start Sat Apr 11 2020 06:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17394 * 1 3 3 C 1.43210 * 179.97438 * 2 1 4 4 C 1.39718 * 119.99121 * 224.58650 * 3 2 1 5 5 C 1.37599 * 119.99886 * 180.02562 * 4 3 2 6 6 C 1.39751 * 119.99513 * 0.26966 * 5 4 3 7 7 C 1.47690 * 119.99998 * 179.70261 * 6 5 4 8 8 O 1.21565 * 120.00381 * 0.02562 * 7 6 5 9 9 N 1.34776 * 119.99523 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99947 * 180.02562 * 9 7 6 11 11 C 1.52998 * 109.47176 * 174.95376 * 10 9 7 12 12 N 1.46895 * 115.55111 * 272.74604 * 11 10 9 13 13 C 1.46908 * 111.00178 * 294.31145 * 12 11 10 14 14 C 1.50696 * 109.47141 * 177.89563 * 13 12 11 15 15 O 1.21288 * 120.00258 * 0.02562 * 14 13 12 16 16 N 1.34780 * 119.99692 * 179.97438 * 14 13 12 17 17 C 1.37095 * 119.99681 * 180.02562 * 16 14 13 18 18 H 1.08003 * 120.00167 * 359.97438 * 17 16 14 19 19 C 1.38953 * 119.99922 * 179.97438 * 17 16 14 20 20 N 1.31407 * 119.99975 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 119.99921 * 179.97438 * 19 17 16 22 22 H 1.48494 * 109.47454 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.46824 * 120.00588 * 21 19 17 24 24 H 1.48499 * 109.47149 * 239.99939 * 21 19 17 25 25 C 1.53004 * 117.49600 * 127.07546 * 11 10 9 26 26 C 1.52996 * 117.49815 * 58.41714 * 11 10 9 27 27 C 1.39745 * 119.99146 * 359.47613 * 6 5 4 28 28 C 1.37597 * 119.99777 * 0.50175 * 27 6 5 29 29 H 4.51951 * 14.06507 * 359.97438 * 4 2 1 30 30 H 1.07995 * 120.00159 * 359.97438 * 4 3 2 31 31 H 1.07994 * 120.00095 * 180.02562 * 5 4 3 32 32 H 0.96996 * 120.00355 * 0.02562 * 9 7 6 33 33 H 1.08998 * 109.47556 * 294.96132 * 10 9 7 34 34 H 1.09006 * 109.46809 * 54.95424 * 10 9 7 35 35 H 1.00905 * 111.00157 * 170.36114 * 12 11 10 36 36 H 1.09005 * 109.46625 * 297.89785 * 13 12 11 37 37 H 1.09000 * 109.46866 * 57.89284 * 13 12 11 38 38 H 0.96998 * 120.00127 * 0.02562 * 16 14 13 39 39 H 0.96996 * 120.00413 * 179.97438 * 20 19 17 40 40 H 1.08998 * 117.49765 * 0.02562 * 25 11 10 41 41 H 1.09004 * 117.49796 * 145.02194 * 25 11 10 42 42 H 1.08997 * 117.50264 * 214.97575 * 26 11 10 43 43 H 1.09000 * 117.49813 * 359.97438 * 26 11 10 44 44 H 1.08001 * 119.99877 * 180.23545 * 27 6 5 45 45 H 1.08001 * 119.99914 * 179.74845 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3041 0.8628 0.8495 5 6 4.6801 0.8639 0.8492 6 6 5.3792 0.0067 -0.0048 7 6 6.8561 0.0125 -0.0099 8 8 7.4636 0.7625 0.7292 9 7 7.5303 -0.8139 -0.8339 10 6 8.9953 -0.8086 -0.8386 11 6 9.5064 -1.9165 -1.7619 12 7 9.6645 -3.2375 -1.1392 13 6 10.7181 -3.2145 -0.1158 14 6 10.8158 -4.5701 0.5352 15 8 10.0804 -5.4673 0.1812 16 7 11.7210 -4.7857 1.5102 17 6 11.8102 -6.0191 2.1021 18 1 11.1548 -6.8178 1.7874 19 6 12.7439 -6.2417 3.1069 20 7 13.5409 -5.2698 3.4901 21 14 12.8649 -7.9220 3.9138 22 1 11.8636 -8.8357 3.3075 23 1 14.2278 -8.4739 3.7060 24 1 12.6001 -7.7925 5.3693 25 6 10.5084 -1.5235 -2.8493 26 6 9.0669 -1.8739 -3.2267 27 6 4.6808 -0.8593 -0.8505 28 6 3.3049 -0.8605 -0.8497 29 1 -1.0500 -0.0002 -0.0009 30 1 2.7637 1.5289 1.5057 31 1 5.2196 1.5300 1.5061 32 1 7.0456 -1.4122 -1.4238 33 1 9.3541 0.1566 -1.1959 34 1 9.3625 -0.9807 0.1733 35 1 9.8509 -3.9449 -1.8342 36 1 11.6717 -2.9655 -0.5816 37 1 10.4758 -2.4658 0.6384 38 1 12.3094 -4.0683 1.7931 39 1 14.1924 -5.4250 4.1917 40 1 10.8038 -0.4759 -2.9066 41 1 11.2847 -2.2454 -3.1030 42 1 8.8954 -2.8262 -3.7286 43 1 8.4133 -1.0570 -3.5326 44 1 5.2211 -1.5245 -1.5078 45 1 2.7651 -1.5269 -1.5062 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001323508365.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:12 Heat of formation + Delta-G solvation = 14.925136 kcal Electronic energy + Delta-G solvation = -27598.214386 eV Core-core repulsion = 23581.949244 eV Total energy + Delta-G solvation = -4016.265142 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.38300 -40.41086 -39.68083 -39.01448 -36.04211 -35.42918 -34.75357 -33.92557 -33.20922 -32.11164 -31.52938 -28.41668 -28.15216 -25.89363 -25.21411 -23.60243 -23.39821 -21.68883 -21.15198 -20.82470 -19.96123 -19.91885 -18.91386 -17.92007 -17.34207 -17.04141 -16.77411 -16.49413 -16.43193 -16.04309 -15.85502 -15.77745 -15.69958 -15.39481 -14.77841 -14.65995 -14.37855 -14.26291 -14.13737 -13.77034 -13.56823 -13.47438 -13.29454 -12.97848 -12.86897 -12.42567 -12.41300 -12.40090 -12.14055 -12.12462 -11.88843 -11.52840 -11.45420 -11.28224 -11.05558 -10.34295 -10.19821 -10.10442 -10.03494 -9.59427 -9.27436 -8.48251 -5.97303 -0.54203 0.31264 1.35412 1.40629 1.46709 1.55087 1.75068 2.00116 2.02229 2.26625 2.27547 2.63061 2.96685 3.02529 3.18818 3.27250 3.42038 3.58978 3.66574 3.76030 3.84308 3.89337 4.01792 4.25047 4.26047 4.42148 4.43203 4.50539 4.54464 4.56627 4.66181 4.76757 4.79498 4.92034 4.94666 5.00091 5.21348 5.22479 5.31067 5.33286 5.35925 5.39468 5.75296 5.83934 6.04951 6.33982 6.48611 6.54521 6.57294 7.10404 7.12960 7.53604 8.08200 8.69375 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.002151 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.892570 B =13014.075559 C =14264.352210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.207 4.207 3 C 0.027 3.973 4 C -0.109 4.109 5 C -0.069 4.069 6 C -0.143 4.143 7 C 0.553 3.447 8 O -0.581 6.581 9 N -0.701 5.701 10 C 0.168 3.832 11 C 0.019 3.981 12 N -0.638 5.638 13 C 0.067 3.933 14 C 0.439 3.561 15 O -0.621 6.621 16 N -0.573 5.573 17 C -0.333 4.333 18 H 0.080 0.920 19 C -0.015 4.015 20 N -0.920 5.920 21 Si 0.994 3.006 22 H -0.272 1.272 23 H -0.269 1.269 24 H -0.272 1.272 25 C -0.196 4.196 26 C -0.145 4.145 27 C -0.076 4.076 28 C -0.106 4.106 29 H 0.261 0.739 30 H 0.148 0.852 31 H 0.135 0.865 32 H 0.414 0.586 33 H 0.086 0.914 34 H 0.054 0.946 35 H 0.352 0.648 36 H 0.069 0.931 37 H 0.093 0.907 38 H 0.396 0.604 39 H 0.278 0.722 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.107 0.893 43 H 0.122 0.878 44 H 0.155 0.845 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.236 14.426 -13.641 27.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.207 4.207 3 C 0.027 3.973 4 C -0.126 4.126 5 C -0.087 4.087 6 C -0.146 4.146 7 C 0.341 3.659 8 O -0.463 6.463 9 N -0.352 5.352 10 C 0.044 3.956 11 C -0.073 4.073 12 N -0.269 5.269 13 C -0.065 4.065 14 C 0.226 3.774 15 O -0.507 6.507 16 N -0.210 5.210 17 C -0.463 4.463 18 H 0.098 0.902 19 C -0.215 4.215 20 N -0.561 5.561 21 Si 0.818 3.182 22 H -0.197 1.197 23 H -0.195 1.195 24 H -0.197 1.197 25 C -0.236 4.236 26 C -0.182 4.182 27 C -0.094 4.094 28 C -0.123 4.123 29 H 0.277 0.723 30 H 0.166 0.834 31 H 0.153 0.847 32 H 0.252 0.748 33 H 0.104 0.896 34 H 0.073 0.927 35 H 0.172 0.828 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.229 0.771 39 H 0.087 0.913 40 H 0.131 0.869 41 H 0.114 0.886 42 H 0.125 0.875 43 H 0.140 0.860 44 H 0.173 0.827 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -19.604 14.416 -12.759 27.476 hybrid contribution 1.239 -0.723 0.185 1.447 sum -18.365 13.692 -12.574 26.131 Atomic orbital electron populations 1.25857 0.96547 0.96294 0.96273 1.20300 0.92534 1.03937 1.03948 1.16424 0.87549 0.96648 0.96714 1.21327 0.93240 0.99078 0.98999 1.21251 0.94025 0.96886 0.96586 1.20051 0.91931 1.01193 1.01379 1.18555 0.87919 0.79887 0.79517 1.90759 1.70801 1.42430 1.42288 1.45753 1.07219 1.40669 1.41567 1.20704 0.79489 0.96492 0.98938 1.21774 1.06139 0.89906 0.89522 1.59782 1.46329 1.04261 1.16541 1.21467 0.95010 0.93910 0.96136 1.20800 0.82556 0.91065 0.82975 1.90485 1.46208 1.47305 1.66713 1.41945 1.33128 1.12808 1.33159 1.19710 1.18948 0.90178 1.17429 0.90198 1.26082 0.95119 1.03042 0.97221 1.69681 1.21905 1.33801 1.30741 0.84850 0.78338 0.77119 0.77900 1.19677 1.19454 1.19737 1.23704 0.93438 1.03801 1.02660 1.23293 0.97612 1.04613 0.92712 1.21458 0.94395 0.96543 0.97003 1.21397 0.93668 0.98532 0.98733 0.72270 0.83445 0.84724 0.74819 0.89608 0.92740 0.82790 0.91289 0.88878 0.77081 0.91293 0.86883 0.88605 0.87480 0.85994 0.82733 0.82796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.43 19.25 74.32 1.43 0.00 16 2 C -0.21 -3.35 13.23 30.02 0.40 -2.95 16 3 C 0.03 0.48 5.73 -21.32 -0.12 0.36 16 4 C -0.11 -1.96 9.73 22.48 0.22 -1.74 16 5 C -0.07 -1.46 9.58 22.48 0.22 -1.25 16 6 C -0.14 -3.13 5.88 -20.05 -0.12 -3.25 16 7 C 0.55 14.67 7.77 86.74 0.67 15.34 16 8 O -0.58 -19.95 16.33 -3.92 -0.06 -20.02 16 9 N -0.70 -15.34 5.42 -466.12 -2.53 -17.87 16 10 C 0.17 3.92 5.74 86.38 0.50 4.42 16 11 C 0.02 0.40 1.90 3.53 0.01 0.41 16 12 N -0.64 -18.99 6.26 -474.14 -2.97 -21.96 16 13 C 0.07 2.32 6.03 85.55 0.52 2.84 16 14 C 0.44 21.08 7.82 87.66 0.69 21.77 16 15 O -0.62 -34.32 15.82 -3.06 -0.05 -34.36 16 16 N -0.57 -29.99 5.29 -306.98 -1.62 -31.61 16 17 C -0.33 -19.19 9.68 84.04 0.81 -18.37 16 18 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 19 C -0.01 -0.81 5.50 84.93 0.47 -0.34 16 20 N -0.92 -50.52 13.05 21.66 0.28 -50.24 16 21 Si 0.99 43.50 29.55 68.60 2.03 45.53 16 22 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 25 C -0.20 -3.26 10.07 30.62 0.31 -2.95 16 26 C -0.14 -2.11 9.56 30.62 0.29 -1.81 16 27 C -0.08 -1.24 9.52 22.48 0.21 -1.03 16 28 C -0.11 -1.65 9.73 22.47 0.22 -1.43 16 29 H 0.26 0.40 7.80 -4.42 -0.03 0.37 16 30 H 0.15 2.08 8.06 -2.91 -0.02 2.05 16 31 H 0.13 2.97 7.64 -2.91 -0.02 2.94 16 32 H 0.41 7.03 6.18 -92.71 -0.57 6.46 16 33 H 0.09 1.79 7.89 -2.39 -0.02 1.78 16 34 H 0.05 1.60 6.46 -2.38 -0.02 1.58 16 35 H 0.35 10.64 8.39 -89.69 -0.75 9.89 16 36 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 37 H 0.09 3.17 6.55 -2.39 -0.02 3.16 16 38 H 0.40 19.82 7.90 -92.71 -0.73 19.08 16 39 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 40 H 0.11 1.58 8.04 -2.39 -0.02 1.57 16 41 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.12 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.16 1.75 6.38 -2.91 -0.02 1.73 16 45 H 0.15 1.69 8.06 -2.91 -0.02 1.67 16 Total: -1.00 -76.72 397.14 0.80 -75.92 By element: Atomic # 1 Polarization: 45.59 SS G_CDS: -1.00 Total: 44.59 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.71 Total: 10.01 kcal Atomic # 7 Polarization: -114.84 SS G_CDS: -6.83 Total: -121.67 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -0.11 Total: -54.38 kcal Atomic # 14 Polarization: 43.50 SS G_CDS: 2.03 Total: 45.53 kcal Total: -76.72 0.80 -75.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001323508365.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.847 kcal (2) G-P(sol) polarization free energy of solvation -76.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.922 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds