Wall clock time and date at job start Sat Apr 11 2020 06:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47713 * 2 1 4 4 C 1.53003 * 109.47220 * 239.99828 * 2 1 3 5 5 O 1.42907 * 109.47211 * 119.99824 * 2 1 3 6 6 C 1.42905 * 113.99479 * 59.99898 * 5 2 1 7 7 C 1.53000 * 109.46807 * 180.02562 * 6 5 2 8 8 C 1.53005 * 109.46869 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46690 * 180.02562 * 8 7 6 10 10 S 1.65600 * 119.99765 * 164.72873 * 9 8 7 11 11 O 1.42094 * 106.40512 * 178.53760 * 10 9 8 12 12 O 1.42106 * 106.40226 * 311.45618 * 10 9 8 13 13 C 1.76198 * 107.22067 * 64.99582 * 10 9 8 14 14 C 1.38640 * 119.75037 * 269.72949 * 13 10 9 15 15 C 1.37618 * 120.24754 * 179.72238 * 14 13 10 16 16 C 1.40708 * 119.74303 * 0.56852 * 15 14 13 17 17 C 1.41395 * 120.24350 * 179.68190 * 16 15 14 18 18 H 1.07999 * 120.00421 * 204.40366 * 17 16 15 19 19 C 1.39948 * 120.00045 * 24.41232 * 17 16 15 20 20 N 1.30828 * 119.99938 * 17.83864 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 197.84763 * 19 17 16 22 22 H 1.48497 * 109.46953 * 59.99362 * 21 19 17 23 23 H 1.48494 * 109.47057 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46965 * 299.99721 * 21 19 17 25 25 C 1.40718 * 119.51587 * 359.70656 * 16 15 14 26 26 C 1.37623 * 119.74191 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.46831 * 300.00103 * 1 2 3 28 28 H 1.09002 * 109.47262 * 59.99727 * 1 2 3 29 29 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47561 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46979 * 300.00446 * 3 2 1 32 32 H 1.09001 * 109.46588 * 59.99784 * 3 2 1 33 33 H 1.09000 * 109.46973 * 300.00264 * 4 2 1 34 34 H 1.09002 * 109.46640 * 60.00063 * 4 2 1 35 35 H 1.08997 * 109.47315 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47025 * 60.00226 * 6 5 2 37 37 H 1.08999 * 109.47282 * 299.99785 * 6 5 2 38 38 H 1.08997 * 109.47183 * 60.00274 * 7 6 5 39 39 H 1.08999 * 109.46984 * 299.99919 * 7 6 5 40 40 H 1.08997 * 109.46914 * 60.00208 * 8 7 6 41 41 H 1.08999 * 109.47332 * 299.99805 * 8 7 6 42 42 H 0.96997 * 120.00372 * 344.99577 * 9 8 7 43 43 H 1.08001 * 119.87510 * 359.97438 * 14 13 10 44 44 H 1.07997 * 120.12712 * 180.27635 * 15 14 13 45 45 H 0.96994 * 120.00050 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.13001 * 179.97438 * 25 16 15 47 47 H 1.07999 * 119.87507 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2645 7 6 2.1494 -2.6537 2.5450 8 6 1.6974 -4.1117 2.6500 9 7 2.2377 -4.7033 3.8764 10 16 1.6206 -6.1293 4.4494 11 8 2.3679 -6.4506 5.6145 12 8 0.2070 -5.9840 4.4483 13 6 1.9937 -7.3745 3.2599 14 6 1.0962 -7.6399 2.2371 15 6 1.3798 -8.6062 1.2993 16 6 2.5806 -9.3343 1.3883 17 6 2.8796 -10.3342 0.4344 18 1 3.5540 -11.1386 0.6884 19 6 2.3018 -10.2815 -0.8392 20 7 1.7794 -9.1639 -1.2747 21 14 2.2762 -11.8068 -1.9172 22 1 1.5269 -12.8877 -1.2277 23 1 1.6125 -11.4902 -3.2072 24 1 3.6685 -12.2554 -2.1733 25 6 3.4815 -9.0604 2.4340 26 6 3.1802 -8.0849 3.3569 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.9491 -2.5916 0.4008 37 1 0.4957 -2.0777 1.2908 38 1 1.7846 -2.0975 3.4086 39 1 3.2383 -2.6114 2.5192 40 1 2.0619 -4.6681 1.7865 41 1 0.6085 -4.1535 2.6760 42 1 2.9543 -4.2579 4.3550 43 1 0.1728 -7.0833 2.1738 44 1 0.6813 -8.8083 0.5008 45 1 1.3786 -9.1274 -2.1572 46 1 4.4058 -9.6134 2.5121 47 1 3.8699 -7.8732 4.1606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327402254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:16 Heat of formation + Delta-G solvation = -130.735109 kcal Electronic energy + Delta-G solvation = -27407.162208 eV Core-core repulsion = 23487.731964 eV Total energy + Delta-G solvation = -3919.430244 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -39.25654 -37.58959 -36.55754 -35.94452 -35.12175 -34.05762 -33.68248 -30.79064 -30.27235 -29.47979 -27.75209 -27.62962 -25.83409 -24.86630 -21.78818 -21.42566 -21.13661 -20.16376 -18.83081 -17.63326 -17.08770 -16.82780 -16.42396 -16.08264 -15.71120 -15.51934 -15.01842 -14.73703 -14.29947 -14.12637 -13.75759 -13.52878 -13.36952 -13.22131 -12.85500 -12.45032 -12.34981 -12.33411 -12.20413 -12.01819 -11.98613 -11.83224 -11.75272 -11.62993 -11.46409 -11.35742 -11.28601 -11.23799 -11.07537 -11.01182 -10.89938 -10.59922 -10.44413 -9.77716 -9.65214 -9.61152 -9.51743 -9.03511 -7.97769 -7.71868 -7.16635 -4.82002 1.26004 2.24224 2.86386 2.87876 2.90695 2.93523 3.40051 3.64528 3.80578 4.22565 4.52878 4.57504 4.59980 4.77604 4.92047 5.01071 5.06816 5.21929 5.27563 5.29128 5.36986 5.37983 5.44453 5.52080 5.56646 5.59787 5.64281 5.71586 5.82492 5.92668 6.01218 6.02251 6.06314 6.10674 6.13776 6.29998 6.66321 6.69318 6.89812 7.03504 7.13976 7.30121 7.34072 7.41465 7.61878 7.75317 7.95248 8.29942 8.49543 8.63391 9.74755 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008915 B = 0.003051 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.984425 B = 9174.070623 C =11652.682328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.107 3.893 3 C -0.137 4.137 4 C -0.181 4.181 5 O -0.378 6.378 6 C 0.057 3.943 7 C -0.122 4.122 8 C 0.124 3.876 9 N -1.126 6.126 10 S 2.695 3.305 11 O -0.986 6.986 12 O -0.985 6.985 13 C -0.787 4.787 14 C -0.017 4.017 15 C -0.183 4.183 16 C 0.139 3.861 17 C -0.435 4.435 18 H 0.087 0.913 19 C 0.073 3.927 20 N -0.766 5.766 21 Si 0.917 3.083 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.261 1.261 25 C -0.239 4.239 26 C 0.003 3.997 27 H 0.063 0.937 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.055 0.945 38 H 0.076 0.924 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.410 0.590 43 H 0.103 0.897 44 H 0.123 0.877 45 H 0.289 0.711 46 H 0.100 0.900 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.558 14.640 -2.647 14.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.067 3.933 3 C -0.194 4.194 4 C -0.238 4.238 5 O -0.298 6.298 6 C -0.021 4.021 7 C -0.161 4.161 8 C -0.003 4.003 9 N -0.882 5.882 10 S 2.794 3.206 11 O -0.977 6.977 12 O -0.975 6.975 13 C -0.883 4.883 14 C -0.038 4.038 15 C -0.203 4.203 16 C 0.136 3.864 17 C -0.463 4.463 18 H 0.105 0.895 19 C -0.149 4.149 20 N -0.389 5.389 21 Si 0.740 3.260 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.186 1.186 25 C -0.260 4.260 26 C -0.017 4.017 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.073 0.927 38 H 0.094 0.906 39 H 0.095 0.905 40 H 0.089 0.911 41 H 0.095 0.905 42 H 0.243 0.757 43 H 0.121 0.879 44 H 0.140 0.860 45 H 0.100 0.900 46 H 0.118 0.882 47 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -1.181 14.709 -2.012 14.893 hybrid contribution 0.462 -0.847 -1.332 1.644 sum -0.720 13.862 -3.344 14.278 Atomic orbital electron populations 1.22446 0.95762 1.02847 1.02694 1.21477 0.93136 0.93092 0.85562 1.21751 1.01923 0.93427 1.02310 1.22452 1.02280 1.01367 0.97719 1.87932 1.74639 1.24192 1.43022 1.22469 0.98832 0.82703 0.98055 1.21650 1.02205 0.94626 0.97637 1.21040 0.99017 0.93194 0.87060 1.55691 1.52883 1.42055 1.37587 1.01169 0.73049 0.72633 0.73791 1.93490 1.73137 1.83795 1.47262 1.93480 1.30259 1.86343 1.87413 1.29155 1.09066 1.26575 1.23546 1.20265 0.95377 0.96147 0.91965 1.21334 0.98248 1.00508 1.00227 1.17849 0.89599 0.89056 0.89921 1.19917 1.22484 1.08052 0.95802 0.89474 1.26129 0.92486 0.97394 0.98925 1.69805 1.24757 1.25935 1.18367 0.86195 0.80001 0.81297 0.78463 1.18346 1.19894 1.18562 1.21055 1.00442 1.03834 1.00677 1.20168 0.92915 0.93415 0.95244 0.91746 0.91604 0.91862 0.91847 0.91267 0.91891 0.91790 0.91611 0.91672 0.92448 0.92668 0.90573 0.90494 0.91118 0.90469 0.75733 0.87898 0.85965 0.89959 0.88195 0.87764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.50 8.25 37.16 0.31 -1.20 16 2 C 0.11 0.99 1.14 -90.62 -0.10 0.89 16 3 C -0.14 -1.07 8.84 37.16 0.33 -0.74 16 4 C -0.18 -1.58 8.25 37.16 0.31 -1.28 16 5 O -0.38 -4.38 9.99 -35.23 -0.35 -4.73 16 6 C 0.06 0.62 5.14 37.16 0.19 0.82 16 7 C -0.12 -1.39 5.73 -26.73 -0.15 -1.55 16 8 C 0.12 1.68 6.23 -4.04 -0.03 1.66 16 9 N -1.13 -16.70 6.00 -10.61 -0.06 -16.77 16 10 S 2.69 51.47 5.73 -107.50 -0.62 50.85 16 11 O -0.99 -20.76 17.26 -57.17 -0.99 -21.74 16 12 O -0.98 -20.87 16.72 -57.17 -0.96 -21.83 16 13 C -0.79 -17.14 5.97 -39.29 -0.23 -17.38 16 14 C -0.02 -0.39 9.49 -39.66 -0.38 -0.77 16 15 C -0.18 -4.50 8.70 -38.88 -0.34 -4.84 16 16 C 0.14 3.50 5.57 -106.83 -0.60 2.90 16 17 C -0.44 -10.56 9.05 -37.74 -0.34 -10.91 16 18 H 0.09 2.00 7.91 -52.49 -0.41 1.59 16 19 C 0.07 1.65 5.14 -17.34 -0.09 1.56 16 20 N -0.77 -17.80 10.95 55.55 0.61 -17.19 16 21 Si 0.92 16.81 29.60 -169.99 -5.03 11.78 16 22 H -0.26 -4.77 7.11 56.52 0.40 -4.37 16 23 H -0.27 -4.88 7.11 56.52 0.40 -4.47 16 24 H -0.26 -4.73 7.11 56.52 0.40 -4.33 16 25 C -0.24 -5.64 9.80 -38.87 -0.38 -6.02 16 26 C 0.00 0.06 9.49 -39.66 -0.38 -0.32 16 27 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.59 6.54 -51.93 -0.34 0.25 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.62 6.42 -51.93 -0.33 0.29 16 37 H 0.06 0.57 6.42 -51.93 -0.33 0.24 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 41 H 0.08 1.05 7.74 -51.93 -0.40 0.65 16 42 H 0.41 5.09 8.65 -34.47 -0.30 4.79 16 43 H 0.10 2.15 7.59 -52.49 -0.40 1.75 16 44 H 0.12 3.03 6.16 -52.49 -0.32 2.71 16 45 H 0.29 6.03 8.30 -40.82 -0.34 5.69 16 46 H 0.10 2.17 8.06 -52.49 -0.42 1.74 16 47 H 0.10 2.10 7.60 -52.49 -0.40 1.70 16 LS Contribution 393.69 15.07 5.93 5.93 Total: -1.00 -29.77 393.69 -10.71 -40.48 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: -7.37 Total: 10.38 kcal Atomic # 6 Polarization: -35.27 SS G_CDS: -1.88 Total: -37.15 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: 0.54 Total: -33.96 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -2.29 Total: -48.31 kcal Atomic # 14 Polarization: 16.81 SS G_CDS: -5.03 Total: 11.78 kcal Atomic # 16 Polarization: 51.47 SS G_CDS: -0.62 Total: 50.85 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -29.77 -10.71 -40.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327402254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.257 kcal (2) G-P(sol) polarization free energy of solvation -29.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds