Wall clock time and date at job start Sat Apr 11 2020 06:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47713 * 2 1 4 4 C 1.53003 * 109.47220 * 239.99828 * 2 1 3 5 5 O 1.42907 * 109.47211 * 119.99824 * 2 1 3 6 6 C 1.42905 * 113.99479 * 59.99898 * 5 2 1 7 7 C 1.53000 * 109.46807 * 180.02562 * 6 5 2 8 8 C 1.53005 * 109.46869 * 179.97438 * 7 6 5 9 9 N 1.46503 * 109.46690 * 180.02562 * 8 7 6 10 10 S 1.65600 * 119.99765 * 164.72873 * 9 8 7 11 11 O 1.42094 * 106.40512 * 178.53760 * 10 9 8 12 12 O 1.42106 * 106.40226 * 311.45618 * 10 9 8 13 13 C 1.76198 * 107.22067 * 64.99582 * 10 9 8 14 14 C 1.38640 * 119.75037 * 269.72949 * 13 10 9 15 15 C 1.37618 * 120.24754 * 179.72238 * 14 13 10 16 16 C 1.40708 * 119.74303 * 0.56852 * 15 14 13 17 17 C 1.41395 * 120.24350 * 179.68190 * 16 15 14 18 18 H 1.07999 * 120.00421 * 204.40366 * 17 16 15 19 19 C 1.39948 * 120.00045 * 24.41232 * 17 16 15 20 20 N 1.30828 * 119.99938 * 17.83864 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 197.84763 * 19 17 16 22 22 H 1.48497 * 109.46953 * 59.99362 * 21 19 17 23 23 H 1.48494 * 109.47057 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46965 * 299.99721 * 21 19 17 25 25 C 1.40718 * 119.51587 * 359.70656 * 16 15 14 26 26 C 1.37623 * 119.74191 * 359.97438 * 25 16 15 27 27 H 1.09001 * 109.46831 * 300.00103 * 1 2 3 28 28 H 1.09002 * 109.47262 * 59.99727 * 1 2 3 29 29 H 1.09000 * 109.47363 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47561 * 180.02562 * 3 2 1 31 31 H 1.09002 * 109.46979 * 300.00446 * 3 2 1 32 32 H 1.09001 * 109.46588 * 59.99784 * 3 2 1 33 33 H 1.09000 * 109.46973 * 300.00264 * 4 2 1 34 34 H 1.09002 * 109.46640 * 60.00063 * 4 2 1 35 35 H 1.08997 * 109.47315 * 180.02562 * 4 2 1 36 36 H 1.08997 * 109.47025 * 60.00226 * 6 5 2 37 37 H 1.08999 * 109.47282 * 299.99785 * 6 5 2 38 38 H 1.08997 * 109.47183 * 60.00274 * 7 6 5 39 39 H 1.08999 * 109.46984 * 299.99919 * 7 6 5 40 40 H 1.08997 * 109.46914 * 60.00208 * 8 7 6 41 41 H 1.08999 * 109.47332 * 299.99805 * 8 7 6 42 42 H 0.96997 * 120.00372 * 344.99577 * 9 8 7 43 43 H 1.08001 * 119.87510 * 359.97438 * 14 13 10 44 44 H 1.07997 * 120.12712 * 180.27635 * 15 14 13 45 45 H 0.96994 * 120.00050 * 180.02562 * 20 19 17 46 46 H 1.07995 * 120.13001 * 179.97438 * 25 16 15 47 47 H 1.07999 * 119.87507 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 8 2.0063 -0.6736 1.1668 6 6 1.5846 -2.0355 1.2645 7 6 2.1494 -2.6537 2.5450 8 6 1.6974 -4.1117 2.6500 9 7 2.2377 -4.7033 3.8764 10 16 1.6206 -6.1293 4.4494 11 8 2.3679 -6.4506 5.6145 12 8 0.2070 -5.9840 4.4483 13 6 1.9937 -7.3745 3.2599 14 6 1.0962 -7.6399 2.2371 15 6 1.3798 -8.6062 1.2993 16 6 2.5806 -9.3343 1.3883 17 6 2.8796 -10.3342 0.4344 18 1 3.5540 -11.1386 0.6884 19 6 2.3018 -10.2815 -0.8392 20 7 1.7794 -9.1639 -1.2747 21 14 2.2762 -11.8068 -1.9172 22 1 1.5269 -12.8877 -1.2277 23 1 1.6125 -11.4902 -3.2072 24 1 3.6685 -12.2554 -2.1733 25 6 3.4815 -9.0604 2.4340 26 6 3.1802 -8.0849 3.3569 27 1 -0.3633 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9562 0.8900 33 1 1.6766 -1.7489 -1.2492 34 1 1.6766 -0.2074 -2.1392 35 1 3.1300 -0.7217 -1.2490 36 1 1.9491 -2.5916 0.4008 37 1 0.4957 -2.0777 1.2908 38 1 1.7846 -2.0975 3.4086 39 1 3.2383 -2.6114 2.5192 40 1 2.0619 -4.6681 1.7865 41 1 0.6085 -4.1535 2.6760 42 1 2.9543 -4.2579 4.3550 43 1 0.1728 -7.0833 2.1738 44 1 0.6813 -8.8083 0.5008 45 1 1.3786 -9.1274 -2.1572 46 1 4.4058 -9.6134 2.5121 47 1 3.8699 -7.8732 4.1606 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327402254.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:15 Heat of formation + Delta-G solvation = -149.171160 kcal Electronic energy + Delta-G solvation = -27407.961655 eV Core-core repulsion = 23487.731964 eV Total energy + Delta-G solvation = -3920.229691 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.03877 -39.37620 -38.16786 -37.09638 -36.77755 -35.79876 -34.52000 -32.06306 -31.81131 -31.28450 -28.40896 -28.29465 -27.61543 -25.88652 -23.33328 -22.95484 -22.61525 -20.90863 -20.32811 -19.41723 -18.62948 -18.15972 -17.56921 -17.23460 -17.01933 -16.82457 -16.07388 -15.85161 -15.59342 -15.54912 -15.13793 -14.93700 -14.62485 -14.26469 -14.10240 -13.95407 -13.81410 -13.58275 -13.17613 -13.15267 -13.06143 -13.01188 -12.89917 -12.88324 -12.84770 -12.65161 -12.60731 -12.56737 -12.49946 -12.19992 -12.01237 -11.85022 -11.54200 -11.34489 -11.32791 -11.21560 -10.42133 -10.37391 -9.78685 -9.54506 -8.87159 -6.64587 -0.30014 0.48991 1.06368 1.35923 1.44435 1.49628 2.11406 2.21633 2.50877 2.74208 2.94404 3.53340 3.61445 3.88676 3.90813 3.98790 4.04504 4.11337 4.24284 4.31664 4.33260 4.48002 4.49120 4.62859 4.65683 4.70457 4.77499 4.82830 4.87347 4.91708 4.95027 4.96009 4.99968 5.10948 5.13889 5.17294 5.24666 5.27005 5.37143 5.38445 5.52865 5.60024 5.76789 5.93424 6.15392 6.19394 6.35973 6.49243 6.68576 6.81397 8.07666 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.008915 B = 0.003051 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3139.984425 B = 9174.070623 C =11652.682328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.097 3.903 3 C -0.135 4.135 4 C -0.180 4.180 5 O -0.394 6.394 6 C 0.056 3.944 7 C -0.113 4.113 8 C 0.119 3.881 9 N -1.110 6.110 10 S 2.728 3.272 11 O -1.002 7.002 12 O -1.002 7.002 13 C -0.797 4.797 14 C -0.019 4.019 15 C -0.207 4.207 16 C 0.111 3.889 17 C -0.467 4.467 18 H 0.090 0.910 19 C 0.036 3.964 20 N -0.793 5.793 21 Si 0.989 3.011 22 H -0.260 1.260 23 H -0.263 1.263 24 H -0.255 1.255 25 C -0.259 4.259 26 C -0.002 4.002 27 H 0.062 0.938 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.088 0.912 32 H 0.061 0.939 33 H 0.055 0.945 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.060 0.940 38 H 0.083 0.917 39 H 0.081 0.919 40 H 0.064 0.936 41 H 0.078 0.922 42 H 0.425 0.575 43 H 0.117 0.883 44 H 0.112 0.888 45 H 0.299 0.701 46 H 0.110 0.890 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.555 15.640 -3.175 15.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.058 3.942 3 C -0.192 4.192 4 C -0.237 4.237 5 O -0.314 6.314 6 C -0.021 4.021 7 C -0.152 4.152 8 C -0.008 4.008 9 N -0.871 5.871 10 S 2.823 3.177 11 O -0.992 6.992 12 O -0.992 6.992 13 C -0.890 4.890 14 C -0.039 4.039 15 C -0.227 4.227 16 C 0.107 3.893 17 C -0.493 4.493 18 H 0.108 0.892 19 C -0.184 4.184 20 N -0.416 5.416 21 Si 0.809 3.191 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.179 1.179 25 C -0.279 4.279 26 C -0.022 4.022 27 H 0.081 0.919 28 H 0.100 0.900 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.107 0.893 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.100 0.900 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.079 0.921 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.082 0.918 41 H 0.096 0.904 42 H 0.261 0.739 43 H 0.135 0.865 44 H 0.130 0.870 45 H 0.110 0.890 46 H 0.128 0.872 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.160 15.701 -2.544 15.948 hybrid contribution 0.456 -1.010 -1.119 1.575 sum -0.705 14.691 -3.663 15.157 Atomic orbital electron populations 1.22434 0.95045 1.02680 1.03421 1.21726 0.93829 0.93684 0.84961 1.21772 1.01682 0.92565 1.03213 1.22448 1.01911 1.01069 0.98290 1.87902 1.75083 1.24214 1.44217 1.22436 0.99140 0.82811 0.97704 1.21549 1.02495 0.92973 0.98229 1.21178 0.99116 0.94516 0.85966 1.55254 1.53301 1.40402 1.38143 1.00200 0.72347 0.72519 0.72590 1.93463 1.73393 1.84462 1.47906 1.93458 1.31664 1.86670 1.87449 1.29635 1.08441 1.27617 1.23334 1.20464 0.96089 0.95607 0.91774 1.21358 0.98459 1.01888 1.01020 1.18201 0.90215 0.89876 0.90972 1.20200 1.23827 1.08462 0.96834 0.89174 1.26967 0.91534 1.00241 0.99630 1.69829 1.24848 1.27656 1.19228 0.85122 0.80182 0.77053 0.76758 1.18408 1.18667 1.17931 1.21282 1.00887 1.04677 1.01077 1.20460 0.93481 0.92842 0.95395 0.91916 0.90001 0.92463 0.92253 0.89345 0.92026 0.92634 0.89976 0.92240 0.92640 0.92136 0.89843 0.90006 0.91764 0.90378 0.73927 0.86509 0.86995 0.89000 0.87179 0.85683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.71 8.25 71.98 0.59 -2.12 16 2 C 0.10 1.67 1.14 -10.79 -0.01 1.66 16 3 C -0.14 -1.89 8.84 71.98 0.64 -1.25 16 4 C -0.18 -2.95 8.25 71.98 0.59 -2.35 16 5 O -0.39 -8.68 9.99 -148.98 -1.49 -10.17 16 6 C 0.06 1.18 5.14 71.98 0.37 1.55 16 7 C -0.11 -2.41 5.73 30.60 0.18 -2.23 16 8 C 0.12 3.07 6.23 86.38 0.54 3.61 16 9 N -1.11 -31.02 6.00 -187.48 -1.12 -32.15 16 10 S 2.73 100.67 5.73 -56.49 -0.32 100.35 16 11 O -1.00 -40.54 17.26 -128.00 -2.21 -42.75 16 12 O -1.00 -41.24 16.72 -128.00 -2.14 -43.38 16 13 C -0.80 -34.45 5.97 22.46 0.13 -34.31 16 14 C -0.02 -0.89 9.49 22.22 0.21 -0.68 16 15 C -0.21 -10.47 8.70 22.73 0.20 -10.28 16 16 C 0.11 5.71 5.57 -21.29 -0.12 5.60 16 17 C -0.47 -23.16 9.05 23.46 0.21 -22.94 16 18 H 0.09 4.24 7.91 -2.91 -0.02 4.21 16 19 C 0.04 1.64 5.14 85.26 0.44 2.08 16 20 N -0.79 -37.33 10.95 21.83 0.24 -37.09 16 21 Si 0.99 34.13 29.60 68.60 2.03 36.16 16 22 H -0.26 -8.92 7.11 99.48 0.71 -8.22 16 23 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 24 H -0.26 -8.51 7.11 99.48 0.71 -7.80 16 25 C -0.26 -12.37 9.80 22.73 0.22 -12.15 16 26 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 27 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 28 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.06 0.93 6.54 -2.39 -0.02 0.91 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.05 0.99 6.54 -2.39 -0.02 0.97 16 34 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 35 H 0.06 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.06 1.18 6.42 -2.39 -0.02 1.16 16 37 H 0.06 1.19 6.42 -2.39 -0.02 1.18 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 40 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 41 H 0.08 2.03 7.74 -2.39 -0.02 2.02 16 42 H 0.42 9.58 8.65 -96.75 -0.84 8.74 16 43 H 0.12 4.90 7.59 -2.91 -0.02 4.88 16 44 H 0.11 5.77 6.16 -2.91 -0.02 5.75 16 45 H 0.30 12.48 8.30 -92.71 -0.77 11.72 16 46 H 0.11 4.85 8.06 -2.91 -0.02 4.83 16 47 H 0.13 4.90 7.60 -2.91 -0.02 4.88 16 Total: -1.00 -63.27 393.69 -0.48 -63.75 By element: Atomic # 1 Polarization: 38.84 SS G_CDS: 0.13 Total: 38.97 kcal Atomic # 6 Polarization: -78.09 SS G_CDS: 4.40 Total: -73.69 kcal Atomic # 7 Polarization: -68.35 SS G_CDS: -0.89 Total: -69.23 kcal Atomic # 8 Polarization: -90.47 SS G_CDS: -5.84 Total: -96.31 kcal Atomic # 14 Polarization: 34.13 SS G_CDS: 2.03 Total: 36.16 kcal Atomic # 16 Polarization: 100.67 SS G_CDS: -0.32 Total: 100.35 kcal Total: -63.27 -0.48 -63.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327402254.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.419 kcal (2) G-P(sol) polarization free energy of solvation -63.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.481 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds