Wall clock time and date at job start Sat Apr 11 2020 06:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34484 * 126.82819 * 2 1 4 4 N 1.36456 * 108.85903 * 179.77605 * 3 2 1 5 5 H 0.96994 * 124.85224 * 180.26881 * 4 3 2 6 6 C 1.34663 * 110.29378 * 0.44216 * 4 3 2 7 7 C 1.50701 * 125.80385 * 179.82603 * 6 4 3 8 8 C 1.50696 * 109.47102 * 264.69309 * 7 6 4 9 9 N 1.34777 * 119.99781 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99876 * 359.97438 * 8 7 6 11 11 C 1.36789 * 108.39543 * 359.56213 * 6 4 3 12 12 C 1.47239 * 126.94246 * 180.26516 * 11 6 4 13 13 O 1.21633 * 119.99890 * 90.00288 * 12 11 6 14 14 N 1.34778 * 119.99826 * 269.99717 * 12 11 6 15 15 C 1.39863 * 119.99764 * 174.72930 * 14 12 11 16 16 C 1.38884 * 120.07344 * 326.51808 * 15 14 12 17 17 C 1.38113 * 119.92646 * 179.74303 * 16 15 14 18 18 C 1.38287 * 120.07203 * 0.51494 * 17 16 15 19 19 C 1.50701 * 119.92629 * 179.74137 * 18 17 16 20 20 C 1.50698 * 109.47110 * 270.02294 * 19 18 17 21 21 H 1.08002 * 120.00261 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99808 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00043 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00247 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47045 * 90.00009 * 24 22 20 26 26 H 1.48504 * 109.47020 * 210.00513 * 24 22 20 27 27 H 1.48500 * 109.46725 * 330.00249 * 24 22 20 28 28 C 1.38277 * 120.14211 * 359.76297 * 18 17 16 29 29 C 1.38107 * 120.07373 * 359.97438 * 28 18 17 30 30 H 1.08993 * 109.47062 * 269.95702 * 1 2 3 31 31 H 1.09001 * 109.47359 * 29.96114 * 1 2 3 32 32 H 1.09006 * 109.46872 * 149.95461 * 1 2 3 33 33 H 1.08003 * 125.57453 * 0.03610 * 3 2 1 34 34 H 1.09007 * 109.46875 * 24.69426 * 7 6 4 35 35 H 1.08999 * 109.47186 * 144.69069 * 7 6 4 36 36 H 0.96996 * 120.00348 * 0.02562 * 9 8 7 37 37 H 0.97003 * 120.00226 * 179.97438 * 9 8 7 38 38 H 0.97001 * 120.00414 * 354.73050 * 14 12 11 39 39 H 1.07999 * 120.03617 * 0.02562 * 16 15 14 40 40 H 1.07997 * 119.96122 * 180.25024 * 17 16 15 41 41 H 1.08998 * 109.46983 * 30.02241 * 19 18 17 42 42 H 1.08998 * 109.47178 * 150.01771 * 19 18 17 43 43 H 0.97005 * 120.00414 * 179.97438 * 23 22 20 44 44 H 1.08003 * 119.96130 * 179.97438 * 28 18 17 45 45 H 1.08008 * 120.03706 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6111 0.6555 0.0050 5 1 4.3839 1.2416 0.0098 6 6 3.6658 -0.6900 -0.0014 7 6 4.9228 -1.5213 -0.0023 8 6 5.2728 -1.9011 -1.4180 9 7 6.3663 -2.6494 -1.6642 10 8 4.5704 -1.5334 -2.3358 11 6 2.3864 -1.1740 -0.0009 12 6 1.9751 -2.5878 -0.0012 13 8 1.8057 -3.1721 1.0520 14 7 1.7862 -3.2344 -1.1686 15 6 1.5036 -4.6042 -1.1715 16 6 2.0569 -5.4310 -0.2025 17 6 1.7716 -6.7823 -0.2050 18 6 0.9445 -7.3141 -1.1774 19 6 0.6400 -8.7900 -1.1805 20 6 1.6664 -9.5129 -2.0140 21 1 2.4597 -8.9589 -2.4939 22 6 1.5922 -10.8813 -2.1649 23 7 2.4877 -11.5122 -2.8927 24 14 0.2197 -11.8394 -1.3355 25 1 -0.9471 -11.9247 -2.2500 26 1 0.6967 -13.2082 -1.0124 27 1 -0.1814 -11.1469 -0.0845 28 6 0.3966 -6.4945 -2.1470 29 6 0.6736 -5.1415 -2.1469 30 1 -0.3633 -0.0008 1.0276 31 1 -0.3634 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5146 33 1 1.9866 2.1059 0.0006 34 1 5.7398 -0.9450 0.4319 35 1 4.7618 -2.4241 0.5869 36 1 6.9279 -2.9438 -0.9301 37 1 6.5915 -2.8942 -2.5754 38 1 1.8463 -2.7498 -2.0068 39 1 2.7060 -5.0170 0.5550 40 1 2.1983 -7.4251 0.5507 41 1 0.6691 -9.1691 -0.1590 42 1 -0.3518 -8.9555 -1.6013 43 1 2.4358 -12.4751 -2.9986 44 1 -0.2487 -6.9129 -2.9053 45 1 0.2457 -4.5019 -2.9048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001362931919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:31 Heat of formation + Delta-G solvation = -11.752734 kcal Electronic energy + Delta-G solvation = -28797.886554 eV Core-core repulsion = 24780.464573 eV Total energy + Delta-G solvation = -4017.421981 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.66406 -39.84897 -39.45477 -37.94176 -34.71935 -34.00667 -33.10262 -32.88547 -31.95410 -30.67116 -30.27577 -28.64613 -26.92803 -26.16398 -23.71819 -22.29583 -22.15243 -21.32696 -20.12571 -19.68181 -19.32523 -18.26904 -17.38110 -17.13757 -16.96507 -16.72358 -16.39378 -15.47138 -15.01287 -14.80950 -14.68496 -14.29074 -14.02680 -13.88955 -13.86953 -13.54158 -13.33593 -13.07464 -12.87181 -12.78334 -12.74557 -12.41425 -12.35988 -12.25707 -11.59590 -11.56309 -11.38981 -10.77763 -10.39819 -10.36134 -10.20655 -10.04573 -9.99630 -9.81298 -9.43006 -9.24691 -8.75739 -8.54578 -8.37863 -8.25777 -7.30236 -6.03904 -4.02370 1.77685 1.89971 2.08624 2.29239 2.36241 2.79470 2.88304 3.26876 3.32092 3.39659 3.43775 3.53550 4.16188 4.45365 4.50514 4.52195 4.65589 4.80104 4.92591 5.02439 5.18923 5.27812 5.29316 5.49834 5.59769 5.60340 5.68561 5.86265 5.93716 5.98613 6.10944 6.13598 6.20762 6.45064 6.55404 6.63868 6.71537 6.84843 6.92151 6.95767 7.02609 7.10401 7.15074 7.21331 7.64230 7.67708 7.70159 7.77398 7.92093 8.35806 8.54186 9.01863 9.56939 11.09101 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016446 B = 0.002604 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.111426 B =10748.070362 C =11775.693061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.130 4.130 3 C -0.008 4.008 4 N -0.545 5.545 5 H 0.414 0.586 6 C 0.089 3.911 7 C -0.085 4.085 8 C 0.518 3.482 9 N -0.853 5.853 10 O -0.527 6.527 11 C -0.198 4.198 12 C 0.591 3.409 13 O -0.523 6.523 14 N -0.658 5.658 15 C 0.114 3.886 16 C -0.119 4.119 17 C -0.105 4.105 18 C -0.041 4.041 19 C 0.015 3.985 20 C -0.510 4.510 21 H 0.074 0.926 22 C 0.068 3.932 23 N -0.902 5.902 24 Si 0.877 3.123 25 H -0.276 1.276 26 H -0.287 1.287 27 H -0.264 1.264 28 C -0.104 4.104 29 C -0.143 4.143 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.062 0.938 33 H 0.170 0.830 34 H 0.106 0.894 35 H 0.120 0.880 36 H 0.402 0.598 37 H 0.405 0.595 38 H 0.410 0.590 39 H 0.122 0.878 40 H 0.121 0.879 41 H 0.028 0.972 42 H 0.023 0.977 43 H 0.263 0.737 44 H 0.122 0.878 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.674 27.972 5.869 29.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.136 4.136 3 C -0.136 4.136 4 N -0.139 5.139 5 H 0.251 0.749 6 C -0.028 4.028 7 C -0.125 4.125 8 C 0.301 3.699 9 N -0.417 5.417 10 O -0.403 6.403 11 C -0.209 4.209 12 C 0.378 3.622 13 O -0.398 6.398 14 N -0.302 5.302 15 C 0.021 3.979 16 C -0.139 4.139 17 C -0.123 4.123 18 C -0.042 4.042 19 C -0.022 4.022 20 C -0.548 4.548 21 H 0.092 0.908 22 C -0.133 4.133 23 N -0.541 5.541 24 Si 0.704 3.296 25 H -0.202 1.202 26 H -0.213 1.213 27 H -0.189 1.189 28 C -0.123 4.123 29 C -0.164 4.164 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.187 0.813 34 H 0.124 0.876 35 H 0.138 0.862 36 H 0.231 0.769 37 H 0.237 0.763 38 H 0.246 0.754 39 H 0.140 0.860 40 H 0.139 0.861 41 H 0.046 0.954 42 H 0.041 0.959 43 H 0.073 0.927 44 H 0.140 0.860 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 5.153 27.855 6.112 28.979 hybrid contribution 0.279 -0.354 -0.153 0.476 sum 5.432 27.500 5.959 28.658 Atomic orbital electron populations 1.20151 0.89507 1.02279 1.02030 1.20411 0.95199 0.90278 1.07744 1.21446 0.82059 0.99022 1.11085 1.41230 1.08294 1.05621 1.58746 0.74940 1.19066 0.93767 0.83248 1.06679 1.20275 0.95040 1.01369 0.95863 1.20371 0.80544 0.77986 0.90990 1.43820 1.28713 1.56031 1.13183 1.90784 1.49721 1.53626 1.46121 1.19885 0.92461 0.92393 1.16168 1.17520 0.76265 0.85079 0.83380 1.90810 1.49531 1.68175 1.31294 1.43490 1.69486 1.07755 1.09444 1.17577 0.99188 0.82210 0.98896 1.20938 1.00697 0.93113 0.99158 1.20933 0.98430 0.93798 0.99163 1.20262 0.94130 0.97104 0.92678 1.18795 0.97440 0.88104 0.97903 1.20955 1.11744 0.92012 1.30109 0.90835 1.25000 0.95870 0.97600 0.94844 1.69903 1.35327 1.09012 1.39815 0.86808 0.82627 0.79358 0.80761 1.20190 1.21321 1.18851 1.20842 1.00640 0.92091 0.98713 1.20760 0.99621 0.96023 0.99952 0.91548 0.91667 0.91863 0.81285 0.87550 0.86226 0.76942 0.76333 0.75432 0.85964 0.86098 0.95417 0.95874 0.92673 0.85988 0.86665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.35 36.01 0.37 -0.42 16 2 C -0.13 -1.42 6.36 -102.54 -0.65 -2.07 16 3 C -0.01 -0.06 11.82 -16.82 -0.20 -0.26 16 4 N -0.54 -4.07 5.90 -9.10 -0.05 -4.12 16 5 H 0.41 1.67 8.96 -40.82 -0.37 1.30 16 6 C 0.09 0.90 5.67 -81.87 -0.46 0.43 16 7 C -0.08 -0.65 6.01 -29.04 -0.17 -0.82 16 8 C 0.52 4.92 8.09 -10.99 -0.09 4.83 16 9 N -0.85 -5.44 8.87 31.22 0.28 -5.16 16 10 O -0.53 -7.12 16.87 5.56 0.09 -7.03 16 11 C -0.20 -2.55 6.05 -103.36 -0.63 -3.17 16 12 C 0.59 9.19 7.03 -12.60 -0.09 9.11 16 13 O -0.52 -9.81 14.80 5.25 0.08 -9.73 16 14 N -0.66 -10.01 5.34 -10.89 -0.06 -10.07 16 15 C 0.11 2.02 6.27 -83.71 -0.53 1.50 16 16 C -0.12 -2.27 8.65 -39.39 -0.34 -2.61 16 17 C -0.10 -2.15 9.69 -39.61 -0.38 -2.53 16 18 C -0.04 -0.90 5.07 -104.59 -0.53 -1.43 16 19 C 0.01 0.36 4.17 -29.04 -0.12 0.24 16 20 C -0.51 -14.65 9.65 -34.44 -0.33 -14.98 16 21 H 0.07 2.31 7.98 -52.49 -0.42 1.89 16 22 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 23 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 24 Si 0.88 21.66 27.47 -169.99 -4.67 16.99 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 H -0.26 -6.27 6.54 56.52 0.37 -5.90 16 28 C -0.10 -2.06 9.69 -39.62 -0.38 -2.44 16 29 C -0.14 -2.51 9.96 -39.39 -0.39 -2.90 16 30 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.17 0.81 8.06 -52.48 -0.42 0.38 16 34 H 0.11 0.40 8.14 -51.92 -0.42 -0.02 16 35 H 0.12 0.97 8.05 -51.93 -0.42 0.55 16 36 H 0.40 1.36 8.83 -40.82 -0.36 1.00 16 37 H 0.41 2.54 8.93 -40.82 -0.36 2.18 16 38 H 0.41 5.65 8.80 -40.82 -0.36 5.29 16 39 H 0.12 2.26 6.42 -52.49 -0.34 1.92 16 40 H 0.12 2.38 8.06 -52.49 -0.42 1.96 16 41 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 42 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 43 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 44 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 45 H 0.12 1.68 8.06 -52.48 -0.42 1.26 16 LS Contribution 389.72 15.07 5.87 5.87 Total: -1.00 -38.30 389.72 -8.65 -46.95 By element: Atomic # 1 Polarization: 14.92 SS G_CDS: -5.93 Total: 8.99 kcal Atomic # 6 Polarization: -10.63 SS G_CDS: -5.03 Total: -15.66 kcal Atomic # 7 Polarization: -47.32 SS G_CDS: 0.94 Total: -46.39 kcal Atomic # 8 Polarization: -16.93 SS G_CDS: 0.17 Total: -16.76 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -4.67 Total: 16.99 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -38.30 -8.65 -46.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362931919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.196 kcal (2) G-P(sol) polarization free energy of solvation -38.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds