Wall clock time and date at job start Sat Apr 11 2020 06:18:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34484 * 126.82819 * 2 1 4 4 N 1.36456 * 108.85903 * 179.77605 * 3 2 1 5 5 H 0.96994 * 124.85224 * 180.26881 * 4 3 2 6 6 C 1.34663 * 110.29378 * 0.44216 * 4 3 2 7 7 C 1.50701 * 125.80385 * 179.82603 * 6 4 3 8 8 C 1.50696 * 109.47102 * 264.69309 * 7 6 4 9 9 N 1.34777 * 119.99781 * 179.97438 * 8 7 6 10 10 O 1.21277 * 119.99876 * 359.97438 * 8 7 6 11 11 C 1.36789 * 108.39543 * 359.56213 * 6 4 3 12 12 C 1.47239 * 126.94246 * 180.26516 * 11 6 4 13 13 O 1.21633 * 119.99890 * 90.00288 * 12 11 6 14 14 N 1.34778 * 119.99826 * 269.99717 * 12 11 6 15 15 C 1.39863 * 119.99764 * 174.72930 * 14 12 11 16 16 C 1.38884 * 120.07344 * 326.51808 * 15 14 12 17 17 C 1.38113 * 119.92646 * 179.74303 * 16 15 14 18 18 C 1.38287 * 120.07203 * 0.51494 * 17 16 15 19 19 C 1.50701 * 119.92629 * 179.74137 * 18 17 16 20 20 C 1.50698 * 109.47110 * 270.02294 * 19 18 17 21 21 H 1.08002 * 120.00261 * 359.97438 * 20 19 18 22 22 C 1.37874 * 119.99808 * 180.02562 * 20 19 18 23 23 N 1.31515 * 120.00043 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 120.00247 * 359.97438 * 22 20 19 25 25 H 1.48498 * 109.47045 * 90.00009 * 24 22 20 26 26 H 1.48504 * 109.47020 * 210.00513 * 24 22 20 27 27 H 1.48500 * 109.46725 * 330.00249 * 24 22 20 28 28 C 1.38277 * 120.14211 * 359.76297 * 18 17 16 29 29 C 1.38107 * 120.07373 * 359.97438 * 28 18 17 30 30 H 1.08993 * 109.47062 * 269.95702 * 1 2 3 31 31 H 1.09001 * 109.47359 * 29.96114 * 1 2 3 32 32 H 1.09006 * 109.46872 * 149.95461 * 1 2 3 33 33 H 1.08003 * 125.57453 * 0.03610 * 3 2 1 34 34 H 1.09007 * 109.46875 * 24.69426 * 7 6 4 35 35 H 1.08999 * 109.47186 * 144.69069 * 7 6 4 36 36 H 0.96996 * 120.00348 * 0.02562 * 9 8 7 37 37 H 0.97003 * 120.00226 * 179.97438 * 9 8 7 38 38 H 0.97001 * 120.00414 * 354.73050 * 14 12 11 39 39 H 1.07999 * 120.03617 * 0.02562 * 16 15 14 40 40 H 1.07997 * 119.96122 * 180.25024 * 17 16 15 41 41 H 1.08998 * 109.46983 * 30.02241 * 19 18 17 42 42 H 1.08998 * 109.47178 * 150.01771 * 19 18 17 43 43 H 0.97005 * 120.00414 * 179.97438 * 23 22 20 44 44 H 1.08003 * 119.96130 * 179.97438 * 28 18 17 45 45 H 1.08008 * 120.03706 * 179.97438 * 29 28 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3131 1.0765 0.0000 4 7 3.6111 0.6555 0.0050 5 1 4.3839 1.2416 0.0098 6 6 3.6658 -0.6900 -0.0014 7 6 4.9228 -1.5213 -0.0023 8 6 5.2728 -1.9011 -1.4180 9 7 6.3663 -2.6494 -1.6642 10 8 4.5704 -1.5334 -2.3358 11 6 2.3864 -1.1740 -0.0009 12 6 1.9751 -2.5878 -0.0012 13 8 1.8057 -3.1721 1.0520 14 7 1.7862 -3.2344 -1.1686 15 6 1.5036 -4.6042 -1.1715 16 6 2.0569 -5.4310 -0.2025 17 6 1.7716 -6.7823 -0.2050 18 6 0.9445 -7.3141 -1.1774 19 6 0.6400 -8.7900 -1.1805 20 6 1.6664 -9.5129 -2.0140 21 1 2.4597 -8.9589 -2.4939 22 6 1.5922 -10.8813 -2.1649 23 7 2.4877 -11.5122 -2.8927 24 14 0.2197 -11.8394 -1.3355 25 1 -0.9471 -11.9247 -2.2500 26 1 0.6967 -13.2082 -1.0124 27 1 -0.1814 -11.1469 -0.0845 28 6 0.3966 -6.4945 -2.1470 29 6 0.6736 -5.1415 -2.1469 30 1 -0.3633 -0.0008 1.0276 31 1 -0.3634 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5146 33 1 1.9866 2.1059 0.0006 34 1 5.7398 -0.9450 0.4319 35 1 4.7618 -2.4241 0.5869 36 1 6.9279 -2.9438 -0.9301 37 1 6.5915 -2.8942 -2.5754 38 1 1.8463 -2.7498 -2.0068 39 1 2.7060 -5.0170 0.5550 40 1 2.1983 -7.4251 0.5507 41 1 0.6691 -9.1691 -0.1590 42 1 -0.3518 -8.9555 -1.6013 43 1 2.4358 -12.4751 -2.9986 44 1 -0.2487 -6.9129 -2.9053 45 1 0.2457 -4.5019 -2.9048 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001362931919.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:30 Heat of formation + Delta-G solvation = -40.508245 kcal Electronic energy + Delta-G solvation = -28799.133487 eV Core-core repulsion = 24780.464573 eV Total energy + Delta-G solvation = -4018.668914 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.43106 -41.14951 -40.19434 -39.38997 -36.22888 -34.90154 -34.70284 -33.77332 -32.94612 -32.22871 -31.80821 -29.61718 -28.50297 -26.86353 -25.21855 -23.87769 -23.54700 -22.09244 -21.68573 -20.48674 -20.35638 -18.96100 -18.94171 -18.53728 -17.94529 -17.69990 -17.43434 -16.73163 -16.28436 -16.15643 -15.93380 -15.47392 -15.40749 -15.15368 -14.78646 -14.59117 -14.34514 -14.33431 -14.21568 -14.11613 -13.85379 -13.56015 -13.47643 -13.41927 -13.24829 -13.05782 -12.53414 -12.23789 -12.15747 -11.94816 -11.76471 -11.61681 -11.18431 -11.14307 -10.87212 -10.77003 -10.65319 -9.79682 -9.53686 -9.06954 -8.84510 -8.28359 -6.33022 0.39019 0.54473 1.03515 1.37865 1.39607 1.51934 1.55980 1.59021 1.61572 2.13999 2.36925 2.38833 2.75448 2.95695 3.05906 3.51383 3.84277 3.99813 4.09611 4.11299 4.12428 4.24043 4.29363 4.37756 4.54034 4.57910 4.60958 4.65500 4.71295 4.88498 4.95324 5.02818 5.08530 5.14075 5.24870 5.28518 5.39479 5.42354 5.55553 5.61913 5.80610 5.85739 5.98515 5.99697 6.13715 6.30182 6.41789 6.43751 6.69810 6.72777 7.12963 7.30225 7.30440 8.88082 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016446 B = 0.002604 C = 0.002377 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1702.111426 B =10748.070362 C =11775.693061 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.162 4.162 3 C 0.011 3.989 4 N -0.529 5.529 5 H 0.433 0.567 6 C 0.092 3.908 7 C -0.084 4.084 8 C 0.513 3.487 9 N -0.840 5.840 10 O -0.573 6.573 11 C -0.241 4.241 12 C 0.597 3.403 13 O -0.561 6.561 14 N -0.650 5.650 15 C 0.120 3.880 16 C -0.125 4.125 17 C -0.114 4.114 18 C -0.073 4.073 19 C 0.022 3.978 20 C -0.517 4.517 21 H 0.029 0.971 22 C 0.008 3.992 23 N -0.949 5.949 24 Si 0.949 3.051 25 H -0.264 1.264 26 H -0.283 1.283 27 H -0.248 1.248 28 C -0.109 4.109 29 C -0.137 4.137 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.042 0.958 33 H 0.209 0.791 34 H 0.151 0.849 35 H 0.114 0.886 36 H 0.418 0.582 37 H 0.407 0.593 38 H 0.418 0.582 39 H 0.125 0.875 40 H 0.120 0.880 41 H 0.029 0.971 42 H 0.033 0.967 43 H 0.267 0.733 44 H 0.131 0.869 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.383 30.544 6.584 31.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.168 4.168 3 C -0.118 4.118 4 N -0.124 5.124 5 H 0.273 0.727 6 C -0.026 4.026 7 C -0.124 4.124 8 C 0.298 3.702 9 N -0.404 5.404 10 O -0.452 6.452 11 C -0.252 4.252 12 C 0.386 3.614 13 O -0.439 6.439 14 N -0.294 5.294 15 C 0.026 3.974 16 C -0.145 4.145 17 C -0.133 4.133 18 C -0.074 4.074 19 C -0.015 4.015 20 C -0.555 4.555 21 H 0.047 0.953 22 C -0.189 4.189 23 N -0.590 5.590 24 Si 0.772 3.228 25 H -0.189 1.189 26 H -0.208 1.208 27 H -0.171 1.171 28 C -0.128 4.128 29 C -0.157 4.157 30 H 0.081 0.919 31 H 0.108 0.892 32 H 0.061 0.939 33 H 0.225 0.775 34 H 0.168 0.832 35 H 0.132 0.868 36 H 0.249 0.751 37 H 0.238 0.762 38 H 0.256 0.744 39 H 0.143 0.857 40 H 0.138 0.862 41 H 0.047 0.953 42 H 0.051 0.949 43 H 0.076 0.924 44 H 0.149 0.851 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 4.914 30.465 6.835 31.606 hybrid contribution 0.509 -1.002 -0.412 1.197 sum 5.423 29.463 6.423 30.639 Atomic orbital electron populations 1.20137 0.89244 1.02485 1.01849 1.20674 0.95868 0.90500 1.09751 1.21988 0.81642 0.99967 1.08212 1.41268 1.09089 1.04955 1.57127 0.72659 1.19279 0.93582 0.84461 1.05316 1.20367 0.95670 1.01561 0.94824 1.20689 0.80549 0.77754 0.91225 1.43755 1.27966 1.54703 1.13973 1.90761 1.51322 1.55654 1.47464 1.19862 0.94454 0.91127 1.19730 1.17985 0.74799 0.86131 0.82509 1.90777 1.51197 1.69411 1.32515 1.43498 1.69114 1.06651 1.10114 1.17739 0.98134 0.83383 0.98108 1.20978 1.01046 0.92688 0.99765 1.20975 0.98547 0.94566 0.99192 1.20171 0.96402 0.96140 0.94645 1.18641 0.96398 0.89568 0.96909 1.21154 1.11662 0.92397 1.30310 0.95294 1.25959 0.98694 0.98717 0.95489 1.70055 1.37663 1.09596 1.41651 0.85667 0.79178 0.77633 0.80279 1.18853 1.20825 1.17136 1.21005 1.00598 0.92924 0.98257 1.21031 0.98841 0.95534 1.00305 0.91935 0.89182 0.93908 0.77482 0.83154 0.86816 0.75123 0.76184 0.74436 0.85734 0.86190 0.95284 0.94923 0.92369 0.85080 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.35 71.24 0.74 -0.72 16 2 C -0.16 -3.30 6.36 -18.52 -0.12 -3.42 16 3 C 0.01 0.14 11.82 83.11 0.98 1.13 16 4 N -0.53 -6.24 5.90 -182.70 -1.08 -7.32 16 5 H 0.43 1.80 8.96 -92.71 -0.83 0.97 16 6 C 0.09 1.68 5.67 41.79 0.24 1.92 16 7 C -0.08 -1.12 6.01 29.10 0.17 -0.95 16 8 C 0.51 9.09 8.09 87.66 0.71 9.80 16 9 N -0.84 -9.58 8.87 -173.54 -1.54 -11.12 16 10 O -0.57 -15.06 16.87 -3.02 -0.05 -15.11 16 11 C -0.24 -6.01 6.05 -19.04 -0.12 -6.12 16 12 C 0.60 18.64 7.03 86.61 0.61 19.25 16 13 O -0.56 -21.45 14.80 -4.14 -0.06 -21.51 16 14 N -0.65 -19.65 5.34 -306.59 -1.64 -21.29 16 15 C 0.12 4.25 6.27 38.17 0.24 4.49 16 16 C -0.12 -4.83 8.65 22.39 0.19 -4.64 16 17 C -0.11 -4.82 9.69 22.25 0.22 -4.60 16 18 C -0.07 -3.26 5.07 -19.84 -0.10 -3.36 16 19 C 0.02 1.09 4.17 29.10 0.12 1.21 16 20 C -0.52 -30.63 9.65 25.60 0.25 -30.38 16 21 H 0.03 1.91 7.98 -2.91 -0.02 1.89 16 22 C 0.01 0.49 5.47 84.65 0.46 0.96 16 23 N -0.95 -60.10 13.96 21.45 0.30 -59.81 16 24 Si 0.95 44.69 27.47 68.60 1.88 46.58 16 25 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 26 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 27 H -0.25 -10.94 6.54 99.48 0.65 -10.29 16 28 C -0.11 -4.30 9.69 22.25 0.22 -4.08 16 29 C -0.14 -4.68 9.96 22.39 0.22 -4.46 16 30 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.04 0.93 8.14 -2.38 -0.02 0.91 16 33 H 0.21 0.99 8.06 -2.91 -0.02 0.97 16 34 H 0.15 0.59 8.14 -2.38 -0.02 0.57 16 35 H 0.11 1.71 8.05 -2.39 -0.02 1.70 16 36 H 0.42 2.09 8.83 -92.71 -0.82 1.27 16 37 H 0.41 4.72 8.93 -92.71 -0.83 3.89 16 38 H 0.42 11.36 8.80 -92.71 -0.82 10.54 16 39 H 0.12 4.73 6.42 -2.91 -0.02 4.71 16 40 H 0.12 4.92 8.06 -2.91 -0.02 4.90 16 41 H 0.03 1.41 7.14 -2.39 -0.02 1.39 16 42 H 0.03 1.53 7.51 -2.39 -0.02 1.52 16 43 H 0.27 15.72 8.31 -92.70 -0.77 14.95 16 44 H 0.13 4.82 8.06 -2.91 -0.02 4.80 16 45 H 0.15 4.03 8.06 -2.91 -0.02 4.00 16 Total: -1.00 -86.67 389.72 0.59 -86.09 By element: Atomic # 1 Polarization: 29.74 SS G_CDS: -2.27 Total: 27.47 kcal Atomic # 6 Polarization: -29.02 SS G_CDS: 5.04 Total: -23.99 kcal Atomic # 7 Polarization: -95.58 SS G_CDS: -3.95 Total: -99.54 kcal Atomic # 8 Polarization: -36.50 SS G_CDS: -0.11 Total: -36.62 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 1.88 Total: 46.58 kcal Total: -86.67 0.59 -86.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001362931919.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.580 kcal (2) G-P(sol) polarization free energy of solvation -86.674 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds