Wall clock time and date at job start Sat Apr 11 2020 06:18:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.31845 * 120.01121 * 2 1 4 4 N 1.28346 * 122.25754 * 180.02562 * 3 2 1 5 5 C 1.32374 * 122.09886 * 0.02562 * 4 3 2 6 6 O 1.35695 * 120.14075 * 179.72180 * 5 4 3 7 7 C 1.39228 * 119.72180 * 359.97438 * 5 4 3 8 8 C 1.50698 * 121.03961 * 179.97438 * 7 5 4 9 9 N 1.46500 * 109.46803 * 90.00373 * 8 7 5 10 10 C 1.34775 * 119.99701 * 180.02562 * 9 8 7 11 11 O 1.21289 * 120.00291 * 0.02562 * 10 9 8 12 12 C 1.50703 * 120.00090 * 179.97438 * 10 9 8 13 13 H 1.09002 * 109.46810 * 60.00537 * 12 10 9 14 14 C 1.50694 * 109.47144 * 300.00444 * 12 10 9 15 15 H 1.07994 * 120.00186 * 324.87247 * 14 12 10 16 16 C 1.37874 * 119.99939 * 144.87893 * 14 12 10 17 17 N 1.31512 * 120.00161 * 5.19211 * 16 14 12 18 18 Si 1.86806 * 120.00134 * 185.18703 * 16 14 12 19 19 H 1.48499 * 109.46787 * 89.99983 * 18 16 14 20 20 H 1.48498 * 109.47130 * 210.00008 * 18 16 14 21 21 H 1.48502 * 109.46871 * 330.00487 * 18 16 14 22 22 C 1.50698 * 109.47192 * 180.02562 * 12 10 9 23 23 C 1.38233 * 119.99931 * 66.01293 * 22 12 10 24 24 C 1.38243 * 119.99897 * 179.80968 * 23 22 12 25 25 C 1.38235 * 119.99566 * 0.39601 * 24 23 22 26 26 C 1.38229 * 120.00427 * 359.86122 * 25 24 23 27 27 C 1.38229 * 120.00150 * 359.95036 * 26 25 24 28 28 C 1.38683 * 117.92257 * 0.02562 * 7 5 4 29 29 C 1.50699 * 120.99141 * 179.97438 * 28 7 5 30 30 H 1.09001 * 109.46995 * 89.99377 * 1 2 3 31 31 H 1.08999 * 109.47222 * 210.00125 * 1 2 3 32 32 H 1.09007 * 109.47215 * 329.99564 * 1 2 3 33 33 H 0.96700 * 113.99568 * 90.00200 * 6 5 4 34 34 H 1.09000 * 109.46915 * 209.99928 * 8 7 5 35 35 H 1.09002 * 109.46817 * 330.00467 * 8 7 5 36 36 H 0.96993 * 120.00350 * 359.97438 * 9 8 7 37 37 H 0.97005 * 120.00237 * 180.02562 * 17 16 14 38 38 H 1.07996 * 120.00404 * 0.02562 * 23 22 12 39 39 H 1.07998 * 119.99947 * 180.23707 * 24 23 22 40 40 H 1.08009 * 119.99522 * 179.83356 * 25 24 23 41 41 H 1.07999 * 119.99987 * 179.97438 * 26 25 24 42 42 H 1.08001 * 120.00704 * 180.02562 * 27 26 25 43 43 H 1.08999 * 109.47305 * 270.02641 * 29 28 7 44 44 H 1.09003 * 109.46885 * 30.01943 * 29 28 7 45 45 H 1.08996 * 109.47216 * 150.02301 * 29 28 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1664 1.1417 0.0000 4 7 3.4489 1.1920 -0.0005 5 6 4.1957 0.0990 -0.0015 6 8 5.5490 0.1985 -0.0077 7 6 3.5869 -1.1531 -0.0016 8 6 4.4082 -2.4165 -0.0033 9 7 4.6759 -2.8268 1.3774 10 6 5.3988 -3.9376 1.6221 11 8 5.8282 -4.5973 0.6993 12 6 5.6747 -4.3594 3.0424 13 1 4.7312 -4.5405 3.5573 14 6 6.4330 -3.2677 3.7523 15 1 7.1573 -2.6749 3.2134 16 6 6.2023 -3.0256 5.0899 17 7 5.3974 -3.8116 5.7710 18 14 7.0331 -1.5814 5.9347 19 1 6.1690 -0.3789 5.8231 20 1 7.2497 -1.9041 7.3679 21 1 8.3409 -1.3132 5.2844 22 6 6.4970 -5.6222 3.0406 23 6 7.7901 -5.6043 2.5523 24 6 8.5459 -6.7619 2.5544 25 6 8.0055 -7.9391 3.0371 26 6 6.7106 -7.9582 3.5205 27 6 5.9563 -6.7999 3.5221 28 6 2.2009 -1.2012 -0.0011 29 6 1.4702 -2.5192 -0.0017 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3633 -0.8900 0.5138 32 1 -0.3634 0.8900 0.5139 33 1 5.9451 0.2291 0.8739 34 1 3.8595 -3.2059 -0.5170 35 1 5.3519 -2.2357 -0.5181 36 1 4.3335 -2.2986 2.1153 37 1 5.2347 -3.6411 6.7120 38 1 8.2113 -4.6852 2.1725 39 1 9.5574 -6.7470 2.1764 40 1 8.5950 -8.8441 3.0362 41 1 6.2884 -8.8781 3.8973 42 1 4.9447 -6.8146 3.9001 43 1 1.2941 -2.8366 -1.0295 44 1 2.0725 -3.2687 0.5118 45 1 0.5157 -2.4058 0.5122 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412539538.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:45 Heat of formation + Delta-G solvation = -5.968402 kcal Electronic energy + Delta-G solvation = -29462.253491 eV Core-core repulsion = 25445.082337 eV Total energy + Delta-G solvation = -4017.171154 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.52006 -39.25455 -37.92784 -37.68963 -35.77615 -34.06768 -33.74188 -32.26925 -31.15733 -29.97675 -28.99150 -28.25594 -27.61478 -26.11195 -23.91328 -22.73524 -21.97766 -21.63241 -20.83850 -19.47071 -18.92423 -18.12969 -16.93664 -16.47418 -16.19988 -15.89344 -15.47050 -14.94093 -14.76699 -14.52831 -14.43358 -14.08398 -13.87139 -13.57534 -13.54891 -13.22708 -12.92652 -12.90404 -12.72970 -12.52102 -12.38565 -12.29456 -12.11049 -11.98455 -11.71154 -11.59426 -11.19029 -11.11621 -11.09030 -10.48644 -10.33335 -10.14790 -9.91179 -9.54461 -9.51558 -9.50803 -8.88387 -8.72242 -8.56838 -7.98544 -7.65837 -6.36950 -4.44101 0.51071 0.65344 2.33686 2.36278 3.08236 3.10985 3.20912 3.22221 3.42942 3.56248 3.91349 3.99340 4.18757 4.22770 4.30961 4.53298 4.78224 4.80155 5.00420 5.04980 5.12413 5.22197 5.34547 5.44050 5.54178 5.65171 5.68814 5.71646 5.76026 5.85598 5.86452 5.88978 6.08809 6.14070 6.23036 6.44929 6.54587 6.78533 6.91983 6.93395 7.10323 7.27534 7.33230 7.39925 7.53390 7.68025 7.89089 7.99363 8.16900 8.56381 8.59863 9.06328 9.22465 10.71136 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011075 B = 0.003647 C = 0.003208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2527.564385 B = 7676.663369 C = 8727.169778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C 0.054 3.946 3 N -0.216 5.216 4 N -0.263 5.263 5 C 0.274 3.726 6 O -0.471 6.471 7 C -0.118 4.118 8 C 0.165 3.835 9 N -0.727 5.727 10 C 0.530 3.470 11 O -0.561 6.561 12 C 0.053 3.947 13 H 0.089 0.911 14 C -0.517 4.517 15 H 0.063 0.937 16 C 0.075 3.925 17 N -0.876 5.876 18 Si 0.896 3.104 19 H -0.278 1.278 20 H -0.284 1.284 21 H -0.271 1.271 22 C -0.010 4.010 23 C -0.085 4.085 24 C -0.134 4.134 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.118 4.118 28 C -0.051 4.051 29 C -0.125 4.125 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.082 0.918 33 H 0.411 0.589 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.404 0.596 37 H 0.267 0.733 38 H 0.110 0.890 39 H 0.106 0.894 40 H 0.105 0.895 41 H 0.106 0.894 42 H 0.111 0.889 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.204 1.682 -7.563 11.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.091 4.091 3 N -0.061 5.061 4 N -0.114 5.114 5 C 0.088 3.912 6 O -0.277 6.277 7 C -0.130 4.130 8 C 0.040 3.960 9 N -0.381 5.381 10 C 0.320 3.680 11 O -0.439 6.439 12 C 0.032 3.968 13 H 0.107 0.893 14 C -0.555 4.555 15 H 0.081 0.919 16 C -0.131 4.131 17 N -0.511 5.511 18 Si 0.723 3.277 19 H -0.204 1.204 20 H -0.209 1.209 21 H -0.195 1.195 22 C -0.011 4.011 23 C -0.103 4.103 24 C -0.152 4.152 25 C -0.166 4.166 26 C -0.150 4.150 27 C -0.136 4.136 28 C -0.062 4.062 29 C -0.181 4.181 30 H 0.102 0.898 31 H 0.102 0.898 32 H 0.101 0.899 33 H 0.271 0.729 34 H 0.096 0.904 35 H 0.102 0.898 36 H 0.239 0.761 37 H 0.077 0.923 38 H 0.129 0.871 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.124 0.876 42 H 0.129 0.871 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -7.957 2.785 -8.632 12.066 hybrid contribution 0.679 -0.423 1.490 1.691 sum -7.279 2.361 -7.142 10.467 Atomic orbital electron populations 1.20718 0.87241 1.04285 1.03618 1.22816 0.99192 0.89708 0.97405 1.72903 1.00074 1.24387 1.08748 1.72926 0.99798 1.27032 1.11667 1.20741 0.86297 0.89074 0.95043 1.84721 1.12902 1.95354 1.34764 1.21352 0.94290 0.96631 1.00757 1.19945 0.98691 0.90738 0.86586 1.45957 1.57092 1.28922 1.06151 1.21757 0.74897 0.78332 0.93058 1.90608 1.51653 1.54281 1.47378 1.18104 0.98678 0.92077 0.87963 0.89338 1.20675 1.24055 1.15943 0.94821 0.91856 1.24970 0.94641 0.96226 0.97230 1.69908 1.35514 1.36462 1.09200 0.86517 0.80084 0.82104 0.79011 1.20384 1.20946 1.19517 1.19985 0.94385 0.93933 0.92778 1.20819 0.94183 0.97081 0.98249 1.20960 0.99154 0.93500 1.01631 1.20803 0.95907 0.97417 1.02513 1.20899 0.94871 0.97702 1.01538 1.20974 0.99607 0.92360 1.00660 1.20963 0.92784 0.97488 0.94980 1.20995 1.00810 0.92653 1.03680 0.89816 0.89829 0.89883 0.72921 0.90396 0.89781 0.76091 0.92266 0.87145 0.87585 0.87707 0.87561 0.87056 0.89597 0.89610 0.89779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.82 36.01 0.35 -0.40 16 2 C 0.05 0.63 6.86 -82.41 -0.57 0.06 16 3 N -0.22 -3.12 11.42 33.60 0.38 -2.73 16 4 N -0.26 -4.12 11.53 30.50 0.35 -3.77 16 5 C 0.27 3.95 7.83 -16.95 -0.13 3.82 16 6 O -0.47 -6.41 12.74 -18.79 -0.24 -6.65 16 7 C -0.12 -1.55 5.31 -104.09 -0.55 -2.10 16 8 C 0.16 2.34 4.92 -5.19 -0.03 2.32 16 9 N -0.73 -11.94 5.45 -61.47 -0.33 -12.28 16 10 C 0.53 10.77 7.04 -10.98 -0.08 10.69 16 11 O -0.56 -12.69 15.42 5.55 0.09 -12.61 16 12 C 0.05 1.18 2.38 -94.08 -0.22 0.95 16 13 H 0.09 2.08 7.13 -51.93 -0.37 1.71 16 14 C -0.52 -12.16 7.46 -34.44 -0.26 -12.42 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.07 1.81 5.45 -17.82 -0.10 1.71 16 17 N -0.88 -22.19 12.84 55.43 0.71 -21.48 16 18 Si 0.90 19.15 29.54 -169.99 -5.02 14.13 16 19 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 C -0.01 -0.22 4.30 -104.62 -0.45 -0.67 16 23 C -0.09 -1.86 8.30 -39.58 -0.33 -2.19 16 24 C -0.13 -2.59 10.05 -39.58 -0.40 -2.99 16 25 C -0.15 -2.69 10.05 -39.59 -0.40 -3.09 16 26 C -0.13 -2.48 10.05 -39.59 -0.40 -2.88 16 27 C -0.12 -2.48 9.67 -39.58 -0.38 -2.87 16 28 C -0.05 -0.57 5.92 -104.28 -0.62 -1.19 16 29 C -0.12 -1.07 8.94 36.00 0.32 -0.75 16 30 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.47 6.05 -51.93 -0.31 0.16 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.18 16 33 H 0.41 4.26 9.06 45.56 0.41 4.67 16 34 H 0.08 1.06 6.89 -51.93 -0.36 0.70 16 35 H 0.08 1.30 7.62 -51.93 -0.40 0.90 16 36 H 0.40 6.50 8.35 -40.82 -0.34 6.15 16 37 H 0.27 6.54 8.31 -40.82 -0.34 6.20 16 38 H 0.11 2.43 7.89 -52.49 -0.41 2.02 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.10 1.58 8.06 -52.48 -0.42 1.15 16 41 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.11 2.25 7.96 -52.49 -0.42 1.83 16 43 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.09 0.86 6.89 -51.93 -0.36 0.50 16 45 H 0.08 0.56 6.07 -51.93 -0.32 0.24 16 LS Contribution 383.26 15.07 5.78 5.78 Total: -1.00 -30.37 383.26 -7.47 -37.84 By element: Atomic # 1 Polarization: 18.70 SS G_CDS: -4.95 Total: 13.75 kcal Atomic # 6 Polarization: -7.75 SS G_CDS: -4.23 Total: -11.98 kcal Atomic # 7 Polarization: -41.37 SS G_CDS: 1.11 Total: -40.26 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.15 Total: -19.25 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.02 Total: 14.13 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.37 -7.47 -37.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412539538.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.871 kcal (2) G-P(sol) polarization free energy of solvation -30.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.839 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds