Wall clock time and date at job start Sat Apr 11 2020 06:18:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31133 * 126.54916 * 2 1 4 4 C 1.34501 * 105.61360 * 180.11837 * 3 2 1 5 5 C 1.50697 * 126.28423 * 179.90147 * 4 3 2 6 6 H 1.08995 * 110.89001 * 2.14547 * 5 4 3 7 7 C 1.55159 * 111.00425 * 238.26052 * 5 4 3 8 8 C 1.54324 * 102.94270 * 206.42950 * 7 5 4 9 9 N 1.47022 * 107.27153 * 22.19231 * 8 7 5 10 10 C 1.34776 * 125.64537 * 181.02028 * 9 8 7 11 11 O 1.21283 * 119.99528 * 180.02562 * 10 9 8 12 12 C 1.50702 * 120.00253 * 0.02562 * 10 9 8 13 13 H 1.09004 * 109.47226 * 300.00485 * 12 10 9 14 14 C 1.50697 * 109.46887 * 60.00447 * 12 10 9 15 15 H 1.08000 * 120.00161 * 29.41252 * 14 12 10 16 16 C 1.37874 * 119.99985 * 209.40595 * 14 12 10 17 17 N 1.31516 * 120.00163 * 6.09070 * 16 14 12 18 18 Si 1.86802 * 119.99956 * 186.08788 * 16 14 12 19 19 H 1.48494 * 109.47198 * 60.00523 * 18 16 14 20 20 H 1.48504 * 109.46892 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47034 * 299.99748 * 18 16 14 22 22 C 1.50706 * 109.47075 * 180.02562 * 12 10 9 23 23 C 1.38229 * 119.99642 * 293.66228 * 22 12 10 24 24 C 1.38241 * 119.99770 * 179.79224 * 23 22 12 25 25 C 1.38238 * 119.99606 * 0.43745 * 24 23 22 26 26 C 1.38232 * 120.00224 * 359.81253 * 25 24 23 27 27 C 1.38233 * 119.99755 * 113.93731 * 22 12 10 28 28 C 1.47423 * 108.70219 * 1.05824 * 9 8 7 29 29 N 1.29942 * 107.42162 * 359.64523 * 4 3 2 30 30 O 1.21299 * 110.25803 * 0.22004 * 29 4 3 31 31 H 1.09003 * 109.47209 * 180.25288 * 1 2 3 32 32 H 1.08996 * 109.47503 * 300.25526 * 1 2 3 33 33 H 1.09003 * 109.47258 * 60.25645 * 1 2 3 34 34 H 1.09004 * 110.72115 * 324.79031 * 7 5 4 35 35 H 1.09002 * 110.72150 * 88.06402 * 7 5 4 36 36 H 1.08998 * 109.88334 * 141.61477 * 8 7 5 37 37 H 1.09005 * 109.87927 * 262.77730 * 8 7 5 38 38 H 0.97000 * 119.99982 * 179.97438 * 17 16 14 39 39 H 1.08007 * 120.00337 * 359.97438 * 23 22 12 40 40 H 1.07999 * 120.00090 * 180.27334 * 24 23 22 41 41 H 1.07999 * 119.99756 * 179.83774 * 25 24 23 42 42 H 1.08000 * 119.99937 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.00227 * 359.97438 * 27 22 12 44 44 H 1.08994 * 110.36644 * 217.02961 * 28 9 8 45 45 H 1.09000 * 110.36177 * 94.71573 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 -0.0027 5 6 4.8111 1.3888 -0.0059 6 1 4.5870 2.4547 0.0324 7 6 5.6884 1.0488 -1.2396 8 6 7.1134 1.3889 -0.7547 9 7 7.0961 1.3471 0.7149 10 6 8.1451 1.6061 1.5204 11 8 8.0156 1.5406 2.7245 12 6 9.4789 1.9771 0.9250 13 1 9.8304 1.1658 0.2875 14 6 9.3310 3.2326 0.1049 15 1 8.5801 3.9633 0.3666 16 6 10.1546 3.4486 -0.9796 17 7 10.9866 2.5083 -1.3710 18 14 10.0884 5.0767 -1.8930 19 1 10.4265 6.1816 -0.9603 20 1 11.0648 5.0566 -3.0118 21 1 8.7212 5.2858 -2.4336 22 6 10.4745 2.2135 2.0314 23 6 10.3100 3.2823 2.8924 24 6 11.2210 3.4966 3.9099 25 6 12.3013 2.6474 4.0606 26 6 12.4686 1.5816 3.1963 27 6 11.5553 1.3648 2.1815 28 6 5.7415 0.9740 1.1612 29 7 3.4644 -0.7241 0.0035 30 8 2.3029 -1.0736 0.0053 31 1 -0.3634 -1.0277 0.0045 32 1 -0.3634 0.5178 0.8876 33 1 -0.3634 0.5099 -0.8923 34 1 5.6085 -0.0091 -1.4899 35 1 5.4125 1.6697 -2.0919 36 1 7.8209 0.6537 -1.1382 37 1 7.3921 2.3867 -1.0938 38 1 11.5658 2.6602 -2.1342 39 1 9.4682 3.9482 2.7721 40 1 11.0901 4.3291 4.5853 41 1 13.0144 2.8164 4.8539 42 1 13.3123 0.9180 3.3144 43 1 11.6860 0.5322 1.5063 44 1 5.4777 1.5177 2.0682 45 1 5.6808 -0.1010 1.3311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462767214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:59 Heat of formation + Delta-G solvation = 58.271085 kcal Electronic energy + Delta-G solvation = -29351.207320 eV Core-core repulsion = 25336.821799 eV Total energy + Delta-G solvation = -4014.385521 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -45.72339 -39.57850 -38.23922 -36.96640 -35.76284 -33.86672 -33.58639 -31.22701 -30.90082 -29.92114 -29.16228 -28.77413 -27.34201 -24.78641 -23.85201 -23.23568 -22.25030 -21.56878 -20.65845 -20.08483 -18.58449 -18.15840 -17.72220 -16.89114 -16.12113 -15.99884 -15.58852 -15.05679 -14.78686 -14.39777 -14.19243 -13.80811 -13.78502 -13.61651 -13.55732 -13.22480 -13.13387 -12.53335 -12.40926 -12.35170 -12.27678 -12.16182 -12.00503 -11.63844 -11.45248 -11.25911 -11.20777 -11.08296 -11.01334 -10.97653 -10.59614 -10.39243 -10.27171 -9.99713 -9.89899 -9.45961 -8.77179 -8.61166 -7.95487 -7.91554 -7.60597 -6.28054 -4.32217 1.00978 2.07351 2.39099 2.41620 2.66271 3.19454 3.26008 3.27755 3.32455 3.68566 3.80179 3.97338 4.27215 4.62243 4.70424 4.80933 4.85059 4.90143 4.90989 5.08591 5.16571 5.36332 5.50899 5.59108 5.61868 5.73500 5.78705 5.84355 5.85369 5.88758 5.93412 6.15845 6.18860 6.25681 6.38425 6.50442 6.59041 6.60874 6.88287 6.95643 7.05054 7.19190 7.38455 7.46076 7.61452 7.76371 7.96799 8.06194 8.06771 8.30448 8.68287 9.16391 9.30963 10.80426 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.003131 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.034560 B = 8941.091850 C =10280.099802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.170 3.830 3 N -0.480 5.480 4 C 0.191 3.809 5 C -0.017 4.017 6 H 0.116 0.884 7 C -0.123 4.123 8 C 0.113 3.887 9 N -0.613 5.613 10 C 0.544 3.456 11 O -0.565 6.565 12 C 0.057 3.943 13 H 0.089 0.911 14 C -0.512 4.512 15 H 0.062 0.938 16 C 0.077 3.923 17 N -0.876 5.876 18 Si 0.893 3.107 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.274 1.274 22 C -0.012 4.012 23 C -0.084 4.084 24 C -0.135 4.135 25 C -0.148 4.148 26 C -0.132 4.132 27 C -0.117 4.117 28 C 0.121 3.879 29 N -0.376 5.376 30 O 0.076 5.924 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.268 0.732 39 H 0.111 0.889 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.353 -4.463 -0.446 15.995 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 N -0.215 5.215 4 C -0.082 4.082 5 C -0.038 4.038 6 H 0.134 0.866 7 C -0.162 4.162 8 C -0.010 4.010 9 N -0.348 5.348 10 C 0.336 3.664 11 O -0.444 6.444 12 C 0.036 3.964 13 H 0.106 0.894 14 C -0.550 4.550 15 H 0.080 0.920 16 C -0.128 4.128 17 N -0.512 5.512 18 Si 0.720 3.280 19 H -0.199 1.199 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.013 4.013 23 C -0.102 4.102 24 C -0.153 4.153 25 C -0.166 4.166 26 C -0.150 4.150 27 C -0.136 4.136 28 C -0.004 4.004 29 N -0.083 5.083 30 O 0.017 5.983 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.121 0.879 34 H 0.094 0.906 35 H 0.103 0.897 36 H 0.089 0.911 37 H 0.115 0.885 38 H 0.077 0.923 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.384 -4.624 0.102 15.109 hybrid contribution -0.097 0.878 -0.642 1.092 sum -14.481 -3.747 -0.540 14.967 Atomic orbital electron populations 1.20360 0.80330 1.05482 1.05608 1.28837 0.98923 0.80952 0.96315 1.71891 1.00308 1.28932 1.20325 1.25492 0.94611 0.88029 1.00049 1.20763 0.86182 0.98772 0.98082 0.86632 1.22831 0.94633 1.02395 0.96334 1.22052 0.94469 1.04446 0.80025 1.48283 1.08942 1.70332 1.07243 1.21448 0.85841 0.73474 0.85589 1.90596 1.84919 1.53681 1.15157 1.18068 0.85631 1.00372 0.92298 0.89350 1.20558 1.19516 1.03502 1.11420 0.92021 1.24908 0.94834 0.96618 0.96413 1.69877 1.22890 1.32321 1.26069 0.86625 0.78094 0.84036 0.79247 1.19904 1.21078 1.19897 1.20038 0.95213 0.92613 0.93426 1.20830 0.98077 0.97236 0.94059 1.20957 0.95853 0.99554 0.98957 1.20797 0.98689 0.96948 1.00200 1.20897 0.99257 0.98307 0.96586 1.20983 0.95335 0.99619 0.97620 1.21984 0.82554 0.99980 0.95884 1.74633 0.96986 1.15705 1.21002 1.85317 1.11524 1.35761 1.65687 0.88580 0.87936 0.87946 0.90623 0.89659 0.91065 0.88474 0.92259 0.87089 0.87594 0.87721 0.87562 0.87027 0.90508 0.91771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.24 10.51 36.00 0.38 0.14 16 2 C 0.17 1.66 8.51 -13.06 -0.11 1.55 16 3 N -0.48 -6.20 11.55 -9.87 -0.11 -6.31 16 4 C 0.19 2.70 6.88 -156.37 -1.08 1.63 16 5 C -0.02 -0.25 3.58 -89.62 -0.32 -0.57 16 6 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 7 C -0.12 -1.73 6.41 -24.90 -0.16 -1.89 16 8 C 0.11 1.97 6.08 -3.06 -0.02 1.95 16 9 N -0.61 -12.05 3.32 -170.52 -0.57 -12.61 16 10 C 0.54 12.56 7.10 -10.98 -0.08 12.48 16 11 O -0.56 -14.30 15.69 5.55 0.09 -14.21 16 12 C 0.06 1.37 1.91 -94.07 -0.18 1.19 16 13 H 0.09 2.24 7.14 -51.93 -0.37 1.87 16 14 C -0.51 -12.55 5.41 -34.44 -0.19 -12.73 16 15 H 0.06 1.53 7.82 -52.49 -0.41 1.12 16 16 C 0.08 1.91 5.45 -17.82 -0.10 1.82 16 17 N -0.88 -22.60 12.85 55.43 0.71 -21.89 16 18 Si 0.89 19.60 29.54 -169.99 -5.02 14.58 16 19 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 20 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 C -0.01 -0.28 4.30 -104.62 -0.45 -0.73 16 23 C -0.08 -1.92 8.32 -39.58 -0.33 -2.25 16 24 C -0.14 -2.72 10.05 -39.58 -0.40 -3.12 16 25 C -0.15 -2.81 10.05 -39.58 -0.40 -3.21 16 26 C -0.13 -2.61 10.05 -39.58 -0.40 -3.01 16 27 C -0.12 -2.61 9.67 -39.58 -0.38 -3.00 16 28 C 0.12 2.06 6.36 -2.53 -0.02 2.04 16 29 N -0.38 -5.36 11.87 30.90 0.37 -5.00 16 30 O 0.08 0.89 11.31 18.09 0.20 1.10 16 31 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.08 1.05 7.97 -51.93 -0.41 0.64 16 35 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 36 H 0.07 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.10 1.84 6.59 -51.93 -0.34 1.50 16 38 H 0.27 6.67 8.31 -40.82 -0.34 6.33 16 39 H 0.11 2.57 7.88 -52.48 -0.41 2.16 16 40 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 41 H 0.10 1.65 8.06 -52.49 -0.42 1.23 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.11 2.40 7.95 -52.49 -0.42 1.98 16 44 H 0.08 1.36 8.04 -51.93 -0.42 0.94 16 45 H 0.06 1.11 7.85 -51.93 -0.41 0.71 16 LS Contribution 380.65 15.07 5.74 5.74 Total: -1.00 -31.00 380.65 -8.95 -39.95 By element: Atomic # 1 Polarization: 12.51 SS G_CDS: -6.13 Total: 6.37 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: -4.22 Total: -7.71 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: 0.40 Total: -45.81 kcal Atomic # 8 Polarization: -13.41 SS G_CDS: 0.29 Total: -13.11 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.02 Total: 14.58 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.00 -8.95 -39.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462767214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.219 kcal (2) G-P(sol) polarization free energy of solvation -31.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds