Wall clock time and date at job start Sat Apr 11 2020 06:18:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.31133 * 126.54916 * 2 1 4 4 C 1.34501 * 105.61360 * 180.11837 * 3 2 1 5 5 C 1.50697 * 126.28423 * 179.90147 * 4 3 2 6 6 H 1.08995 * 110.89001 * 2.14547 * 5 4 3 7 7 C 1.55159 * 111.00425 * 238.26052 * 5 4 3 8 8 C 1.54324 * 102.94270 * 206.42950 * 7 5 4 9 9 N 1.47022 * 107.27153 * 22.19231 * 8 7 5 10 10 C 1.34776 * 125.64537 * 181.02028 * 9 8 7 11 11 O 1.21283 * 119.99528 * 180.02562 * 10 9 8 12 12 C 1.50702 * 120.00253 * 0.02562 * 10 9 8 13 13 H 1.09004 * 109.47226 * 300.00485 * 12 10 9 14 14 C 1.50697 * 109.46887 * 60.00447 * 12 10 9 15 15 H 1.08000 * 120.00161 * 29.41252 * 14 12 10 16 16 C 1.37874 * 119.99985 * 209.40595 * 14 12 10 17 17 N 1.31516 * 120.00163 * 6.09070 * 16 14 12 18 18 Si 1.86802 * 119.99956 * 186.08788 * 16 14 12 19 19 H 1.48494 * 109.47198 * 60.00523 * 18 16 14 20 20 H 1.48504 * 109.46892 * 180.02562 * 18 16 14 21 21 H 1.48500 * 109.47034 * 299.99748 * 18 16 14 22 22 C 1.50706 * 109.47075 * 180.02562 * 12 10 9 23 23 C 1.38229 * 119.99642 * 293.66228 * 22 12 10 24 24 C 1.38241 * 119.99770 * 179.79224 * 23 22 12 25 25 C 1.38238 * 119.99606 * 0.43745 * 24 23 22 26 26 C 1.38232 * 120.00224 * 359.81253 * 25 24 23 27 27 C 1.38233 * 119.99755 * 113.93731 * 22 12 10 28 28 C 1.47423 * 108.70219 * 1.05824 * 9 8 7 29 29 N 1.29942 * 107.42162 * 359.64523 * 4 3 2 30 30 O 1.21299 * 110.25803 * 0.22004 * 29 4 3 31 31 H 1.09003 * 109.47209 * 180.25288 * 1 2 3 32 32 H 1.08996 * 109.47503 * 300.25526 * 1 2 3 33 33 H 1.09003 * 109.47258 * 60.25645 * 1 2 3 34 34 H 1.09004 * 110.72115 * 324.79031 * 7 5 4 35 35 H 1.09002 * 110.72150 * 88.06402 * 7 5 4 36 36 H 1.08998 * 109.88334 * 141.61477 * 8 7 5 37 37 H 1.09005 * 109.87927 * 262.77730 * 8 7 5 38 38 H 0.97000 * 119.99982 * 179.97438 * 17 16 14 39 39 H 1.08007 * 120.00337 * 359.97438 * 23 22 12 40 40 H 1.07999 * 120.00090 * 180.27334 * 24 23 22 41 41 H 1.07999 * 119.99756 * 179.83774 * 25 24 23 42 42 H 1.08000 * 119.99937 * 180.02562 * 26 25 24 43 43 H 1.07995 * 120.00227 * 359.97438 * 27 22 12 44 44 H 1.08994 * 110.36644 * 217.02961 * 28 9 8 45 45 H 1.09000 * 110.36177 * 94.71573 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2879 1.0535 0.0000 4 6 3.5441 0.5729 -0.0027 5 6 4.8111 1.3888 -0.0059 6 1 4.5870 2.4547 0.0324 7 6 5.6884 1.0488 -1.2396 8 6 7.1134 1.3889 -0.7547 9 7 7.0961 1.3471 0.7149 10 6 8.1451 1.6061 1.5204 11 8 8.0156 1.5406 2.7245 12 6 9.4789 1.9771 0.9250 13 1 9.8304 1.1658 0.2875 14 6 9.3310 3.2326 0.1049 15 1 8.5801 3.9633 0.3666 16 6 10.1546 3.4486 -0.9796 17 7 10.9866 2.5083 -1.3710 18 14 10.0884 5.0767 -1.8930 19 1 10.4265 6.1816 -0.9603 20 1 11.0648 5.0566 -3.0118 21 1 8.7212 5.2858 -2.4336 22 6 10.4745 2.2135 2.0314 23 6 10.3100 3.2823 2.8924 24 6 11.2210 3.4966 3.9099 25 6 12.3013 2.6474 4.0606 26 6 12.4686 1.5816 3.1963 27 6 11.5553 1.3648 2.1815 28 6 5.7415 0.9740 1.1612 29 7 3.4644 -0.7241 0.0035 30 8 2.3029 -1.0736 0.0053 31 1 -0.3634 -1.0277 0.0045 32 1 -0.3634 0.5178 0.8876 33 1 -0.3634 0.5099 -0.8923 34 1 5.6085 -0.0091 -1.4899 35 1 5.4125 1.6697 -2.0919 36 1 7.8209 0.6537 -1.1382 37 1 7.3921 2.3867 -1.0938 38 1 11.5658 2.6602 -2.1342 39 1 9.4682 3.9482 2.7721 40 1 11.0901 4.3291 4.5853 41 1 13.0144 2.8164 4.8539 42 1 13.3123 0.9180 3.3144 43 1 11.6860 0.5322 1.5063 44 1 5.4777 1.5177 2.0682 45 1 5.6808 -0.1010 1.3311 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001462767214.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:58 Heat of formation + Delta-G solvation = 39.577760 kcal Electronic energy + Delta-G solvation = -29352.017923 eV Core-core repulsion = 25336.821799 eV Total energy + Delta-G solvation = -4015.196124 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.68135 -41.23330 -39.79772 -38.53015 -36.81942 -35.58026 -34.67853 -32.94801 -32.32423 -31.55949 -30.33137 -29.65719 -29.02741 -26.38361 -25.26602 -24.43481 -23.52618 -23.21677 -22.23855 -21.23514 -20.18354 -19.17639 -18.79207 -18.71655 -17.83819 -17.53559 -17.01155 -16.56054 -16.19170 -15.85972 -15.76025 -15.25195 -15.18007 -14.78605 -14.56590 -14.17029 -14.14844 -14.02950 -14.00267 -13.82346 -13.64594 -13.43824 -13.30367 -13.20153 -12.95870 -12.85094 -12.77649 -12.52143 -12.22387 -12.18852 -12.09483 -11.97739 -11.83797 -11.68207 -11.30113 -10.85828 -10.68189 -10.48204 -9.60794 -9.56976 -9.29254 -8.19722 -6.28846 0.15329 0.73164 0.77271 1.09377 1.43161 1.46443 1.51944 1.81646 1.94218 2.07085 2.42483 2.62082 2.96305 3.08479 3.22978 3.37175 3.57534 3.74881 4.10262 4.17447 4.20959 4.27666 4.28451 4.30613 4.41376 4.49391 4.52195 4.56568 4.65517 4.67407 4.75253 4.84023 4.87364 4.92801 4.94474 5.01102 5.11283 5.14952 5.16593 5.33373 5.42287 5.49294 5.64709 5.76125 5.80822 5.93157 6.21400 6.37487 6.58365 6.72745 7.16141 7.33975 7.37410 8.88598 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013204 B = 0.003131 C = 0.002723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2120.034560 B = 8941.091850 C =10280.099802 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.188 3.812 3 N -0.508 5.508 4 C 0.179 3.821 5 C -0.005 4.005 6 H 0.121 0.879 7 C -0.107 4.107 8 C 0.114 3.886 9 N -0.613 5.613 10 C 0.539 3.461 11 O -0.594 6.594 12 C 0.063 3.937 13 H 0.064 0.936 14 C -0.511 4.511 15 H 0.052 0.948 16 C 0.042 3.958 17 N -0.902 5.902 18 Si 0.946 3.054 19 H -0.280 1.280 20 H -0.283 1.283 21 H -0.260 1.260 22 C -0.042 4.042 23 C -0.110 4.110 24 C -0.135 4.135 25 C -0.142 4.142 26 C -0.129 4.129 27 C -0.142 4.142 28 C 0.122 3.878 29 N -0.399 5.399 30 O 0.078 5.922 31 H 0.123 0.877 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.060 0.940 37 H 0.083 0.917 38 H 0.267 0.733 39 H 0.095 0.905 40 H 0.136 0.864 41 H 0.148 0.852 42 H 0.140 0.860 43 H 0.106 0.894 44 H 0.067 0.933 45 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.637 -4.070 -0.342 17.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.031 4.031 3 N -0.242 5.242 4 C -0.094 4.094 5 C -0.025 4.025 6 H 0.139 0.861 7 C -0.146 4.146 8 C -0.009 4.009 9 N -0.345 5.345 10 C 0.331 3.669 11 O -0.476 6.476 12 C 0.042 3.958 13 H 0.082 0.918 14 C -0.548 4.548 15 H 0.070 0.930 16 C -0.160 4.160 17 N -0.539 5.539 18 Si 0.771 3.229 19 H -0.206 1.206 20 H -0.209 1.209 21 H -0.184 1.184 22 C -0.043 4.043 23 C -0.128 4.128 24 C -0.153 4.153 25 C -0.160 4.160 26 C -0.147 4.147 27 C -0.160 4.160 28 C -0.002 4.002 29 N -0.107 5.107 30 O 0.018 5.982 31 H 0.141 0.859 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.098 0.902 35 H 0.128 0.872 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.077 0.923 39 H 0.113 0.887 40 H 0.154 0.846 41 H 0.166 0.834 42 H 0.158 0.842 43 H 0.124 0.876 44 H 0.085 0.915 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.710 -4.231 0.178 16.270 hybrid contribution 0.219 0.686 -0.598 0.936 sum -15.491 -3.545 -0.420 15.897 Atomic orbital electron populations 1.20783 0.76119 1.07793 1.07026 1.29943 1.00566 0.79520 0.93108 1.71887 1.00049 1.30156 1.22088 1.25312 0.94876 0.88104 1.01071 1.20564 0.86202 0.99193 0.96580 0.86089 1.22744 0.91820 1.03169 0.96834 1.22067 0.96781 1.03314 0.78688 1.48288 1.09324 1.68833 1.08103 1.21349 0.86513 0.73637 0.85440 1.90552 1.85513 1.55261 1.16235 1.17915 0.86331 0.99259 0.92260 0.91789 1.20549 1.19274 1.03390 1.11601 0.92975 1.25469 0.94496 0.99057 0.96986 1.69980 1.23625 1.33721 1.26540 0.85794 0.78698 0.80396 0.78021 1.20608 1.20871 1.18415 1.20155 0.95965 0.93906 0.94253 1.20861 0.98937 0.97354 0.95673 1.21339 0.95294 1.00526 0.98174 1.21283 0.98601 0.95595 1.00497 1.21305 0.99243 0.98887 0.95285 1.21130 0.96089 0.99762 0.99033 1.22034 0.81753 0.99595 0.96843 1.74619 0.98447 1.15839 1.21826 1.85282 1.11045 1.36229 1.65668 0.85897 0.86426 0.86138 0.90161 0.87154 0.92155 0.89881 0.92338 0.88665 0.84578 0.83407 0.84177 0.87629 0.91461 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.27 10.51 71.23 0.75 0.48 16 2 C 0.19 3.28 8.51 88.38 0.75 4.03 16 3 N -0.51 -12.43 11.55 -303.18 -3.50 -15.93 16 4 C 0.18 4.96 6.88 138.46 0.95 5.91 16 5 C 0.00 -0.14 3.58 -10.15 -0.04 -0.17 16 6 H 0.12 3.36 8.14 -2.39 -0.02 3.34 16 7 C -0.11 -2.97 6.41 31.78 0.20 -2.76 16 8 C 0.11 4.13 6.08 86.73 0.53 4.65 16 9 N -0.61 -25.23 3.32 -811.80 -2.70 -27.93 16 10 C 0.54 26.28 7.10 87.66 0.62 26.91 16 11 O -0.59 -31.63 15.69 -3.04 -0.05 -31.68 16 12 C 0.06 3.21 1.91 -13.03 -0.02 3.18 16 13 H 0.06 3.49 7.14 -2.38 -0.02 3.47 16 14 C -0.51 -26.03 5.41 25.60 0.14 -25.90 16 15 H 0.05 2.70 7.82 -2.91 -0.02 2.68 16 16 C 0.04 2.14 5.45 84.65 0.46 2.61 16 17 N -0.90 -47.94 12.85 21.45 0.28 -47.66 16 18 Si 0.95 40.56 29.54 68.60 2.03 42.59 16 19 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 20 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 21 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 22 C -0.04 -2.07 4.30 -19.87 -0.09 -2.16 16 23 C -0.11 -5.17 8.32 22.27 0.19 -4.99 16 24 C -0.14 -5.29 10.05 22.27 0.22 -5.07 16 25 C -0.14 -5.01 10.05 22.27 0.22 -4.79 16 26 C -0.13 -4.91 10.05 22.27 0.22 -4.68 16 27 C -0.14 -6.47 9.67 22.27 0.22 -6.26 16 28 C 0.12 4.31 6.36 86.85 0.55 4.86 16 29 N -0.40 -11.15 11.87 -60.31 -0.72 -11.87 16 30 O 0.08 1.71 11.31 74.80 0.85 2.55 16 31 H 0.12 -0.05 8.14 -2.39 -0.02 -0.07 16 32 H 0.12 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.08 2.19 7.97 -2.39 -0.02 2.17 16 35 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 36 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 37 H 0.08 3.26 6.59 -2.38 -0.02 3.24 16 38 H 0.27 13.62 8.31 -92.71 -0.77 12.85 16 39 H 0.10 4.63 7.88 -2.91 -0.02 4.61 16 40 H 0.14 4.38 8.06 -2.91 -0.02 4.36 16 41 H 0.15 3.95 8.06 -2.91 -0.02 3.93 16 42 H 0.14 4.28 8.06 -2.91 -0.02 4.25 16 43 H 0.11 4.78 7.95 -2.91 -0.02 4.75 16 44 H 0.07 2.49 8.04 -2.39 -0.02 2.47 16 45 H 0.06 2.20 7.85 -2.39 -0.02 2.18 16 Total: -1.00 -70.27 380.65 3.08 -67.20 By element: Atomic # 1 Polarization: 25.87 SS G_CDS: 1.00 Total: 26.88 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 5.89 Total: -4.15 kcal Atomic # 7 Polarization: -96.75 SS G_CDS: -6.64 Total: -103.39 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: 0.80 Total: -29.12 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -70.27 3.08 -67.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462767214.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.773 kcal (2) G-P(sol) polarization free energy of solvation -70.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.196 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds