Wall clock time and date at job start Sat Apr 11 2020 06:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31129 * 126.54879 * 2 1 4 4 C 1.34497 * 105.61451 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.28982 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.88341 * 357.57369 * 5 4 3 7 7 C 1.55157 * 111.00335 * 121.45509 * 5 4 3 8 8 C 1.54330 * 102.94107 * 153.61752 * 7 5 4 9 9 N 1.47029 * 107.26856 * 337.80373 * 8 7 5 10 10 C 1.34775 * 125.64368 * 178.90595 * 9 8 7 11 11 O 1.21285 * 119.99560 * 180.02562 * 10 9 8 12 12 C 1.50691 * 120.00163 * 0.02761 * 10 9 8 13 13 H 1.08998 * 109.47189 * 299.99293 * 12 10 9 14 14 C 1.50702 * 109.47597 * 60.00031 * 12 10 9 15 15 H 1.07996 * 119.99881 * 29.26461 * 14 12 10 16 16 C 1.37877 * 119.99875 * 209.26946 * 14 12 10 17 17 N 1.31508 * 120.00020 * 353.07290 * 16 14 12 18 18 Si 1.86804 * 119.99779 * 173.07654 * 16 14 12 19 19 H 1.48501 * 109.46954 * 269.99854 * 18 16 14 20 20 H 1.48500 * 109.47280 * 149.99688 * 18 16 14 21 21 H 1.48504 * 109.46844 * 29.99728 * 18 16 14 22 22 C 1.50708 * 109.47043 * 179.97438 * 12 10 9 23 23 C 1.38232 * 119.99935 * 293.50639 * 22 12 10 24 24 C 1.38239 * 120.00024 * 179.78881 * 23 22 12 25 25 C 1.38231 * 119.99559 * 0.43724 * 24 23 22 26 26 C 1.38234 * 120.00638 * 359.81403 * 25 24 23 27 27 C 1.38236 * 119.99590 * 359.97438 * 26 25 24 28 28 C 1.47426 * 108.70035 * 359.17151 * 9 8 7 29 29 N 1.29953 * 107.42151 * 0.24312 * 4 3 2 30 30 O 1.21296 * 110.25046 * 359.57166 * 29 4 3 31 31 H 1.08998 * 109.46948 * 90.00490 * 1 2 3 32 32 H 1.09004 * 109.47297 * 209.99793 * 1 2 3 33 33 H 1.08998 * 109.47503 * 330.00503 * 1 2 3 34 34 H 1.08996 * 110.72047 * 35.25336 * 7 5 4 35 35 H 1.09007 * 110.71872 * 271.97501 * 7 5 4 36 36 H 1.08999 * 109.88166 * 218.39303 * 8 7 5 37 37 H 1.08996 * 109.88134 * 97.22161 * 8 7 5 38 38 H 0.96991 * 120.00439 * 354.67849 * 17 16 14 39 39 H 1.07995 * 120.00130 * 359.97438 * 23 22 12 40 40 H 1.07997 * 120.00154 * 180.27214 * 24 23 22 41 41 H 1.08003 * 120.00123 * 179.83837 * 25 24 23 42 42 H 1.08000 * 120.00565 * 179.97438 * 26 25 24 43 43 H 1.08006 * 119.99751 * 179.97438 * 27 26 25 44 44 H 1.09008 * 110.36414 * 142.74579 * 28 9 8 45 45 H 1.08999 * 110.36461 * 265.05499 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2879 1.0534 0.0000 4 6 3.5441 0.5729 -0.0006 5 6 4.8111 1.3887 -0.0014 6 1 4.5870 2.4545 -0.0445 7 6 5.6886 1.0544 1.2339 8 6 7.1135 1.3933 0.7476 9 7 7.0962 1.3451 -0.7218 10 6 8.1447 1.6027 -1.5285 11 8 8.0151 1.5327 -2.7324 12 6 9.4780 1.9775 -0.9347 13 1 9.3700 2.8876 -0.3447 14 6 9.9658 0.8598 -0.0494 15 1 9.6809 -0.1602 -0.2610 16 6 10.7758 1.1394 1.0308 17 7 11.2340 2.3588 1.2108 18 14 11.2224 -0.2140 2.2384 19 1 10.2112 -0.2614 3.3249 20 1 12.5607 0.0627 2.8195 21 1 11.2503 -1.5194 1.5308 22 6 10.4732 2.2113 -2.0420 23 6 10.8770 1.1588 -2.8420 24 6 11.7865 1.3741 -3.8605 25 6 12.2991 2.6401 -4.0732 26 6 11.8993 3.6917 -3.2699 27 6 10.9864 3.4772 -2.2542 28 6 5.7403 0.9747 -1.1667 29 7 3.4645 -0.7242 -0.0062 30 8 2.3029 -1.0736 -0.0005 31 1 -0.3633 -0.0001 -1.0277 32 1 -0.3634 -0.8900 0.5138 33 1 -0.3634 0.8900 0.5137 34 1 5.6092 -0.0024 1.4887 35 1 5.4123 1.6789 2.0835 36 1 7.8213 0.6601 1.1341 37 1 7.3916 2.3926 1.0825 38 1 11.0668 3.0432 0.5442 39 1 10.4796 0.1689 -2.6733 40 1 12.0986 0.5526 -4.4884 41 1 13.0116 2.8079 -4.8672 42 1 12.3000 4.6807 -3.4358 43 1 10.6743 4.2987 -1.6263 44 1 5.4770 1.5184 -2.0741 45 1 5.6771 -0.1002 -1.3359 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462767218.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:02 Heat of formation + Delta-G solvation = 55.541557 kcal Electronic energy + Delta-G solvation = -29409.898606 eV Core-core repulsion = 25395.394724 eV Total energy + Delta-G solvation = -4014.503882 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.75936 -39.70478 -38.37289 -37.06086 -35.81336 -34.08572 -33.74554 -31.20692 -30.83023 -30.04434 -29.21377 -28.84364 -27.23820 -24.66596 -23.82402 -23.28036 -22.33940 -21.64416 -20.76628 -20.15196 -18.81489 -18.23062 -17.80605 -17.29275 -16.26949 -15.94425 -15.77405 -15.13213 -14.65685 -14.45679 -13.91317 -13.87802 -13.83892 -13.80791 -13.48572 -13.35879 -13.21537 -12.74765 -12.50278 -12.42924 -12.30591 -12.25535 -12.16460 -11.86116 -11.54858 -11.35154 -11.24540 -11.13860 -10.90772 -10.86719 -10.62499 -10.32107 -10.23738 -10.16310 -9.93881 -9.02009 -8.86722 -8.63586 -8.06139 -8.02217 -7.67661 -6.57831 -4.32987 0.97998 2.03356 2.26303 2.31035 2.63309 3.26444 3.31126 3.36174 3.51303 3.54601 3.75291 3.92762 4.36646 4.54622 4.65709 4.73765 4.76960 4.85687 4.87610 5.11334 5.13606 5.31515 5.44218 5.51455 5.57215 5.64455 5.67234 5.73767 5.78285 5.83076 5.85624 6.05129 6.08434 6.10452 6.29431 6.38375 6.44827 6.50404 6.61433 6.82823 6.93532 6.96582 7.27303 7.33920 7.56865 7.80620 7.92415 8.03367 8.17159 8.20213 8.58691 9.04337 9.36755 10.79610 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.013162 B = 0.003157 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.809809 B = 8866.853435 C =10238.290536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.171 3.829 3 N -0.481 5.481 4 C 0.190 3.810 5 C -0.017 4.017 6 H 0.114 0.886 7 C -0.123 4.123 8 C 0.113 3.887 9 N -0.612 5.612 10 C 0.549 3.451 11 O -0.562 6.562 12 C 0.049 3.951 13 H 0.066 0.934 14 C -0.588 4.588 15 H 0.058 0.942 16 C 0.034 3.966 17 N -0.893 5.893 18 Si 1.064 2.936 19 H -0.284 1.284 20 H -0.283 1.283 21 H -0.286 1.286 22 C -0.022 4.022 23 C -0.078 4.078 24 C -0.132 4.132 25 C -0.145 4.145 26 C -0.128 4.128 27 C -0.127 4.127 28 C 0.120 3.880 29 N -0.374 5.374 30 O 0.078 5.922 31 H 0.101 0.899 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.097 0.903 37 H 0.068 0.932 38 H 0.275 0.725 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.077 0.923 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.836 -2.155 0.091 16.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 N -0.215 5.215 4 C -0.083 4.083 5 C -0.038 4.038 6 H 0.132 0.868 7 C -0.162 4.162 8 C -0.010 4.010 9 N -0.347 5.347 10 C 0.341 3.659 11 O -0.441 6.441 12 C 0.028 3.972 13 H 0.084 0.916 14 C -0.625 4.625 15 H 0.076 0.924 16 C -0.173 4.173 17 N -0.527 5.527 18 Si 0.892 3.108 19 H -0.210 1.210 20 H -0.209 1.209 21 H -0.212 1.212 22 C -0.023 4.023 23 C -0.097 4.097 24 C -0.150 4.150 25 C -0.164 4.164 26 C -0.147 4.147 27 C -0.146 4.146 28 C -0.004 4.004 29 N -0.081 5.081 30 O 0.018 5.982 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.122 0.878 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.115 0.885 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.127 0.873 44 H 0.095 0.905 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -15.215 -2.548 0.815 15.449 hybrid contribution -0.926 0.232 -1.391 1.687 sum -16.142 -2.317 -0.576 16.317 Atomic orbital electron populations 1.20373 0.80295 1.05801 1.05379 1.28836 0.98935 0.80932 0.96287 1.71892 1.00266 1.28959 1.20364 1.25437 0.94557 0.88067 1.00288 1.20699 0.86322 0.98651 0.98143 0.86816 1.22841 0.94274 1.02864 0.96198 1.22045 0.95487 1.03348 0.80135 1.48247 1.08854 1.70402 1.07220 1.21168 0.84964 0.74267 0.85497 1.90603 1.84427 1.53947 1.15090 1.18124 0.86465 0.99970 0.92616 0.91575 1.21535 1.35156 0.92745 1.13075 0.92421 1.25798 0.92921 1.00535 0.98053 1.70741 1.41731 1.02695 1.37509 0.83599 0.77149 0.74472 0.75612 1.20995 1.20862 1.21223 1.20121 0.96301 0.92017 0.93840 1.20799 0.95912 0.98893 0.94048 1.20987 0.98714 0.96573 0.98759 1.20826 1.01605 0.93493 1.00441 1.20885 0.98891 0.98174 0.96702 1.20966 0.98808 0.96626 0.98153 1.21958 0.82305 1.00354 0.95811 1.74657 0.96975 1.15665 1.20766 1.85315 1.11506 1.35738 1.65640 0.88108 0.88462 0.87787 0.90208 0.89636 0.88475 0.91368 0.91385 0.87007 0.87384 0.87487 0.87354 0.87281 0.90508 0.91569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.15 16 2 C 0.17 1.64 8.51 -13.06 -0.11 1.53 16 3 N -0.48 -6.07 11.55 -9.87 -0.11 -6.18 16 4 C 0.19 2.64 6.89 -156.37 -1.08 1.57 16 5 C -0.02 -0.24 3.56 -89.75 -0.32 -0.56 16 6 H 0.11 1.50 8.14 -51.93 -0.42 1.08 16 7 C -0.12 -1.70 6.41 -24.89 -0.16 -1.86 16 8 C 0.11 1.96 6.02 -3.06 -0.02 1.94 16 9 N -0.61 -12.01 3.32 -170.65 -0.57 -12.58 16 10 C 0.55 12.70 7.10 -10.99 -0.08 12.62 16 11 O -0.56 -14.27 15.69 5.55 0.09 -14.18 16 12 C 0.05 1.18 1.48 -94.07 -0.14 1.04 16 13 H 0.07 1.63 6.70 -51.93 -0.35 1.28 16 14 C -0.59 -14.69 5.44 -34.44 -0.19 -14.88 16 15 H 0.06 1.50 7.82 -52.49 -0.41 1.09 16 16 C 0.03 0.87 5.45 -17.82 -0.10 0.78 16 17 N -0.89 -24.27 13.55 55.43 0.75 -23.52 16 18 Si 1.06 23.17 29.91 -169.99 -5.08 18.08 16 19 H -0.28 -5.82 7.11 56.52 0.40 -5.42 16 20 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 21 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 22 C -0.02 -0.52 4.12 -104.62 -0.43 -0.95 16 23 C -0.08 -1.81 8.33 -39.58 -0.33 -2.14 16 24 C -0.13 -2.67 10.05 -39.58 -0.40 -3.07 16 25 C -0.15 -2.74 10.05 -39.59 -0.40 -3.14 16 26 C -0.13 -2.50 10.05 -39.58 -0.40 -2.90 16 27 C -0.13 -2.78 9.40 -39.58 -0.37 -3.15 16 28 C 0.12 2.04 6.36 -2.65 -0.02 2.03 16 29 N -0.37 -5.35 11.87 30.90 0.37 -4.98 16 30 O 0.08 0.91 11.31 18.11 0.20 1.11 16 31 H 0.10 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.10 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.08 1.13 7.97 -51.93 -0.41 0.71 16 35 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.10 1.87 6.71 -51.93 -0.35 1.52 16 37 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 38 H 0.27 7.44 6.48 -40.82 -0.26 7.18 16 39 H 0.11 2.66 7.88 -52.49 -0.41 2.24 16 40 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 41 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 42 H 0.11 1.77 8.06 -52.49 -0.42 1.35 16 43 H 0.11 2.24 7.96 -52.48 -0.42 1.83 16 44 H 0.08 1.33 8.04 -51.92 -0.42 0.92 16 45 H 0.07 1.17 7.84 -51.93 -0.41 0.77 16 LS Contribution 378.67 15.07 5.71 5.71 Total: -1.00 -32.27 378.67 -8.84 -41.12 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -6.04 Total: 6.43 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -4.15 Total: -11.01 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: 0.44 Total: -47.26 kcal Atomic # 8 Polarization: -13.36 SS G_CDS: 0.29 Total: -13.07 kcal Atomic # 14 Polarization: 23.17 SS G_CDS: -5.08 Total: 18.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -32.27 -8.84 -41.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462767218.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.658 kcal (2) G-P(sol) polarization free energy of solvation -32.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.116 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds