Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.31130 * 126.55342 * 2 1 4 4 C 1.34491 * 105.61914 * 179.97438 * 3 2 1 5 5 C 1.50697 * 126.29107 * 180.12719 * 4 3 2 6 6 H 1.08998 * 110.88467 * 359.54306 * 5 4 3 7 7 C 1.55155 * 111.00536 * 235.65851 * 5 4 3 8 8 C 1.54323 * 102.94026 * 206.42620 * 7 5 4 9 9 N 1.47015 * 107.27344 * 22.19361 * 8 7 5 10 10 C 1.34781 * 125.64962 * 181.10117 * 9 8 7 11 11 O 1.21281 * 120.00325 * 179.97438 * 10 9 8 12 12 C 1.50702 * 120.00013 * 359.97185 * 10 9 8 13 13 H 1.08999 * 109.46999 * 59.99885 * 12 10 9 14 14 C 1.50699 * 109.47113 * 300.00372 * 12 10 9 15 15 H 1.08008 * 120.00059 * 325.17542 * 14 12 10 16 16 C 1.37872 * 120.00507 * 145.18007 * 14 12 10 17 17 N 1.31518 * 119.99988 * 5.19496 * 16 14 12 18 18 Si 1.86797 * 120.00293 * 185.20117 * 16 14 12 19 19 H 1.48496 * 109.47187 * 359.97438 * 18 16 14 20 20 H 1.48506 * 109.47332 * 119.99752 * 18 16 14 21 21 H 1.48508 * 109.46861 * 239.99472 * 18 16 14 22 22 C 1.50691 * 109.47176 * 180.02562 * 12 10 9 23 23 C 1.38232 * 120.00373 * 66.04138 * 22 12 10 24 24 C 1.38241 * 120.00210 * 179.74178 * 23 22 12 25 25 C 1.38229 * 119.99630 * 0.53070 * 24 23 22 26 26 C 1.38230 * 120.00414 * 359.74657 * 25 24 23 27 27 C 1.38234 * 120.00012 * 359.97438 * 26 25 24 28 28 C 1.47468 * 108.72517 * 1.02265 * 9 8 7 29 29 N 1.29948 * 107.41978 * 0.34882 * 4 3 2 30 30 O 1.21307 * 110.25525 * 359.78387 * 29 4 3 31 31 H 1.08993 * 109.47566 * 179.70977 * 1 2 3 32 32 H 1.09006 * 109.47099 * 299.70892 * 1 2 3 33 33 H 1.09003 * 109.47442 * 59.70278 * 1 2 3 34 34 H 1.09008 * 110.71949 * 324.78688 * 7 5 4 35 35 H 1.08995 * 110.72314 * 88.05996 * 7 5 4 36 36 H 1.09004 * 109.88231 * 141.61104 * 8 7 5 37 37 H 1.09002 * 109.88082 * 262.77364 * 8 7 5 38 38 H 0.96991 * 120.00708 * 180.02562 * 17 16 14 39 39 H 1.07999 * 119.99941 * 359.97438 * 23 22 12 40 40 H 1.07995 * 120.00001 * 180.29711 * 24 23 22 41 41 H 1.08005 * 119.99575 * 179.76655 * 25 24 23 42 42 H 1.08003 * 120.00411 * 179.97438 * 26 25 24 43 43 H 1.08001 * 120.00612 * 180.02562 * 27 26 25 44 44 H 1.08999 * 110.41052 * 217.08552 * 28 9 8 45 45 H 1.09004 * 110.34687 * 94.75095 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0534 0.0000 4 6 3.5441 0.5728 0.0006 5 6 4.8112 1.3886 0.0035 6 1 4.5866 2.4552 -0.0029 7 6 5.7225 1.0048 -1.1921 8 6 7.1336 1.3629 -0.6800 9 7 7.0750 1.3740 0.7890 10 6 8.1008 1.6638 1.6139 11 8 7.9374 1.6424 2.8154 12 6 9.4507 2.0145 1.0431 13 1 9.3604 2.9000 0.4141 14 6 9.9618 0.8620 0.2176 15 1 9.7438 -0.1534 0.5143 16 6 10.7078 1.1036 -0.9165 17 7 11.0602 2.3332 -1.2222 18 14 11.2180 -0.3155 -2.0188 19 1 10.6998 -1.5891 -1.4579 20 1 10.6605 -0.1104 -3.3799 21 1 12.7000 -0.3752 -2.0948 22 6 10.4146 2.2927 2.1676 23 6 10.7874 1.2754 3.0261 24 6 11.6758 1.5294 4.0543 25 6 12.1828 2.8032 4.2307 26 6 11.8056 3.8218 3.3757 27 6 10.9218 3.5665 2.3440 28 6 5.7078 1.0173 1.2110 29 7 3.4645 -0.7242 -0.0067 30 8 2.3028 -1.0736 -0.0072 31 1 -0.3634 -1.0276 -0.0052 32 1 -0.3633 0.5093 0.8926 33 1 -0.3634 0.5184 -0.8873 34 1 5.6490 -0.0615 -1.4063 35 1 5.4710 1.5945 -2.0736 36 1 7.8511 0.6146 -1.0167 37 1 7.4222 2.3479 -1.0469 38 1 11.5846 2.5034 -2.0201 39 1 10.3875 0.2813 2.8912 40 1 11.9707 0.7336 4.7221 41 1 12.8739 3.0025 5.0364 42 1 12.2015 4.8172 3.5138 43 1 10.6273 4.3622 1.6757 44 1 5.4186 1.5938 2.0897 45 1 5.6416 -0.0508 1.4184 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001462767220.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = 58.297988 kcal Electronic energy + Delta-G solvation = -29363.376322 eV Core-core repulsion = 25348.991968 eV Total energy + Delta-G solvation = -4014.384354 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.72550 -39.57877 -38.23673 -36.96651 -35.76625 -33.87251 -33.58835 -31.22758 -30.91015 -29.91408 -29.15166 -28.79688 -27.33596 -24.79460 -23.86979 -23.21812 -22.26837 -21.56622 -20.64460 -20.08948 -18.59712 -18.16287 -17.73745 -16.82083 -16.25943 -15.86771 -15.69537 -15.07749 -14.76139 -14.39022 -14.08370 -13.82377 -13.80274 -13.75505 -13.40112 -13.26400 -13.17272 -12.57295 -12.41100 -12.36284 -12.30458 -12.15196 -11.96156 -11.63670 -11.50676 -11.26020 -11.20661 -11.10230 -11.03139 -10.97219 -10.59757 -10.38911 -10.24428 -9.98998 -9.90348 -9.41846 -8.79494 -8.63401 -7.95402 -7.91261 -7.59000 -6.28612 -4.33012 1.01021 2.06772 2.40066 2.42479 2.66256 3.15947 3.26311 3.29457 3.31964 3.65088 3.81408 3.98479 4.26312 4.61087 4.69635 4.80072 4.85639 4.89276 4.90454 5.07683 5.15073 5.34959 5.49943 5.57510 5.60833 5.74229 5.78887 5.83223 5.84658 5.88174 5.93777 6.13916 6.18181 6.27214 6.39644 6.51072 6.56670 6.61512 6.87406 6.95384 7.04457 7.18321 7.39221 7.46984 7.62175 7.76246 7.97072 8.06479 8.06979 8.30368 8.68641 9.16680 9.30334 10.79659 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012917 B = 0.003181 C = 0.002743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2167.187741 B = 8801.353828 C =10204.517927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.170 3.830 3 N -0.481 5.481 4 C 0.190 3.810 5 C -0.018 4.018 6 H 0.114 0.886 7 C -0.124 4.124 8 C 0.114 3.886 9 N -0.613 5.613 10 C 0.543 3.457 11 O -0.565 6.565 12 C 0.057 3.943 13 H 0.089 0.911 14 C -0.510 4.510 15 H 0.062 0.938 16 C 0.076 3.924 17 N -0.875 5.875 18 Si 0.891 3.109 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.281 1.281 22 C -0.010 4.010 23 C -0.085 4.085 24 C -0.134 4.134 25 C -0.149 4.149 26 C -0.132 4.132 27 C -0.117 4.117 28 C 0.120 3.880 29 N -0.375 5.375 30 O 0.077 5.923 31 H 0.095 0.905 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.084 0.916 36 H 0.094 0.906 37 H 0.071 0.929 38 H 0.266 0.734 39 H 0.110 0.890 40 H 0.106 0.894 41 H 0.105 0.895 42 H 0.106 0.894 43 H 0.112 0.888 44 H 0.077 0.923 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.205 -1.720 -0.714 16.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.050 4.050 3 N -0.215 5.215 4 C -0.083 4.083 5 C -0.038 4.038 6 H 0.132 0.868 7 C -0.163 4.163 8 C -0.009 4.009 9 N -0.348 5.348 10 C 0.336 3.664 11 O -0.444 6.444 12 C 0.036 3.964 13 H 0.107 0.893 14 C -0.547 4.547 15 H 0.081 0.919 16 C -0.129 4.129 17 N -0.511 5.511 18 Si 0.718 3.282 19 H -0.194 1.194 20 H -0.205 1.205 21 H -0.207 1.207 22 C -0.011 4.011 23 C -0.103 4.103 24 C -0.153 4.153 25 C -0.167 4.167 26 C -0.150 4.150 27 C -0.135 4.135 28 C -0.004 4.004 29 N -0.081 5.081 30 O 0.018 5.982 31 H 0.114 0.886 32 H 0.121 0.879 33 H 0.120 0.880 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.076 0.924 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.124 0.876 43 H 0.130 0.870 44 H 0.095 0.905 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -15.303 -1.688 -0.173 15.397 hybrid contribution 0.237 -0.787 -0.758 1.118 sum -15.066 -2.474 -0.932 15.297 Atomic orbital electron populations 1.20361 0.80331 1.05494 1.05592 1.28833 0.98924 0.80962 0.96327 1.71876 1.00296 1.28958 1.20386 1.25472 0.94576 0.88053 1.00169 1.20760 0.86264 0.98646 0.98170 0.86767 1.22850 0.94316 1.02587 0.96547 1.22024 0.95337 1.03512 0.80023 1.48287 1.08853 1.70450 1.07168 1.21531 0.85649 0.73912 0.85355 1.90595 1.84171 1.54196 1.15390 1.18079 0.85284 1.00678 0.92380 0.89306 1.20665 1.34615 0.91472 1.07967 0.91941 1.24926 0.94881 0.95767 0.97333 1.69920 1.36131 1.19089 1.25941 0.86535 0.78746 0.82565 0.80380 1.19421 1.20536 1.20729 1.20006 0.95935 0.91850 0.93301 1.20823 0.96359 0.99055 0.94105 1.20946 0.99056 0.96381 0.98878 1.20790 1.01958 0.93722 1.00207 1.20893 0.99386 0.98205 0.96521 1.20973 0.98379 0.96718 0.97437 1.22001 0.82486 1.00438 0.95496 1.74653 0.96947 1.15697 1.20849 1.85324 1.11526 1.35755 1.65637 0.88575 0.87939 0.87954 0.90298 0.89765 0.88762 0.91028 0.92385 0.87179 0.87619 0.87732 0.87567 0.87032 0.90492 0.91718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.23 10.51 36.01 0.38 0.14 16 2 C 0.17 1.66 8.51 -13.06 -0.11 1.54 16 3 N -0.48 -6.13 11.55 -9.86 -0.11 -6.25 16 4 C 0.19 2.68 6.88 -156.38 -1.08 1.60 16 5 C -0.02 -0.25 3.57 -89.62 -0.32 -0.57 16 6 H 0.11 1.52 8.14 -51.93 -0.42 1.10 16 7 C -0.12 -1.74 6.41 -24.90 -0.16 -1.90 16 8 C 0.11 1.99 6.02 -3.07 -0.02 1.97 16 9 N -0.61 -12.02 3.32 -170.48 -0.57 -12.59 16 10 C 0.54 12.53 7.10 -10.98 -0.08 12.46 16 11 O -0.56 -14.29 15.67 5.56 0.09 -14.21 16 12 C 0.06 1.36 1.91 -94.08 -0.18 1.18 16 13 H 0.09 2.23 7.14 -51.93 -0.37 1.86 16 14 C -0.51 -12.62 5.47 -34.44 -0.19 -12.80 16 15 H 0.06 1.60 7.82 -52.48 -0.41 1.19 16 16 C 0.08 1.88 5.45 -17.82 -0.10 1.79 16 17 N -0.88 -22.59 12.84 55.43 0.71 -21.88 16 18 Si 0.89 19.62 29.54 -169.99 -5.02 14.60 16 19 H -0.27 -5.96 7.11 56.52 0.40 -5.55 16 20 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C -0.01 -0.24 4.30 -104.63 -0.45 -0.69 16 23 C -0.09 -1.97 8.31 -39.58 -0.33 -2.29 16 24 C -0.13 -2.72 10.05 -39.58 -0.40 -3.12 16 25 C -0.15 -2.83 10.05 -39.59 -0.40 -3.22 16 26 C -0.13 -2.60 10.05 -39.59 -0.40 -3.00 16 27 C -0.12 -2.60 9.67 -39.58 -0.38 -2.98 16 28 C 0.12 2.05 6.37 -2.50 -0.02 2.03 16 29 N -0.37 -5.40 11.87 30.90 0.37 -5.03 16 30 O 0.08 0.91 11.31 18.10 0.20 1.12 16 31 H 0.10 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 1.13 7.90 -51.92 -0.41 0.72 16 35 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.09 1.81 6.71 -51.93 -0.35 1.47 16 37 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 38 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.11 2.58 7.89 -52.49 -0.41 2.16 16 40 H 0.11 1.84 8.06 -52.49 -0.42 1.41 16 41 H 0.10 1.65 8.06 -52.48 -0.42 1.23 16 42 H 0.11 1.77 8.06 -52.48 -0.42 1.34 16 43 H 0.11 2.38 7.96 -52.49 -0.42 1.96 16 44 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 45 H 0.06 1.15 7.92 -51.93 -0.41 0.74 16 LS Contribution 380.76 15.07 5.74 5.74 Total: -1.00 -31.26 380.76 -8.95 -40.21 By element: Atomic # 1 Polarization: 12.28 SS G_CDS: -6.14 Total: 6.14 kcal Atomic # 6 Polarization: -3.63 SS G_CDS: -4.22 Total: -7.86 kcal Atomic # 7 Polarization: -46.15 SS G_CDS: 0.40 Total: -45.75 kcal Atomic # 8 Polarization: -13.38 SS G_CDS: 0.29 Total: -13.09 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -31.26 -8.95 -40.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001462767220.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.513 kcal (2) G-P(sol) polarization free energy of solvation -31.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.215 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds