Wall clock time and date at job start Sat Apr 11 2020 06:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.35083 * 119.95145 * 2 1 4 4 N 1.35434 * 122.50820 * 180.24743 * 3 2 1 5 5 H 0.96999 * 119.20154 * 179.77586 * 4 3 2 6 6 C 1.37649 * 121.59750 * 359.80700 * 4 3 2 7 7 C 1.39200 * 121.15961 * 179.97438 * 6 4 3 8 8 C 1.37760 * 119.70147 * 180.02562 * 7 6 4 9 9 C 1.38844 * 120.71286 * 0.02562 * 8 7 6 10 10 C 1.36679 * 120.55266 * 359.97438 * 9 8 7 11 11 C 1.39533 * 119.66763 * 359.97438 * 10 9 8 12 12 C 1.41298 * 119.94870 * 179.79139 * 2 1 3 13 13 N 1.33616 * 121.10009 * 359.97438 * 12 2 1 14 14 C 1.33572 * 119.99704 * 343.73818 * 13 12 2 15 15 O 1.21874 * 120.00582 * 306.75196 * 14 13 12 16 16 N 1.34784 * 119.99413 * 126.75260 * 14 13 12 17 17 C 1.47016 * 125.65061 * 0.02562 * 16 14 13 18 18 C 1.54318 * 107.26991 * 178.89780 * 17 16 14 19 19 C 1.55159 * 102.94284 * 337.80436 * 18 17 16 20 20 O 1.42897 * 111.00572 * 277.42630 * 19 18 17 21 21 C 1.50700 * 111.00413 * 153.61782 * 19 18 17 22 22 H 1.08005 * 120.00113 * 268.61913 * 21 19 18 23 23 C 1.37882 * 120.00255 * 88.61089 * 21 19 18 24 24 N 1.31514 * 120.00014 * 177.43789 * 23 21 19 25 25 Si 1.86796 * 119.99721 * 357.44384 * 23 21 19 26 26 H 1.48501 * 109.47412 * 93.78803 * 25 23 21 27 27 H 1.48506 * 109.46931 * 213.78732 * 25 23 21 28 28 H 1.48499 * 109.47221 * 333.78586 * 25 23 21 29 29 C 1.47426 * 125.64303 * 179.97438 * 16 14 13 30 30 H 1.09005 * 109.46864 * 264.81344 * 1 2 3 31 31 H 1.08996 * 109.47275 * 24.80833 * 1 2 3 32 32 H 1.09001 * 109.47608 * 144.81564 * 1 2 3 33 33 H 1.07998 * 118.74540 * 0.02562 * 3 2 1 34 34 H 1.08003 * 120.15573 * 0.07154 * 7 6 4 35 35 H 1.07994 * 119.64629 * 180.02562 * 8 7 6 36 36 H 1.07996 * 119.72152 * 179.97438 * 9 8 7 37 37 H 1.07993 * 120.16620 * 179.97438 * 10 9 8 38 38 H 1.08998 * 109.88274 * 59.47845 * 17 16 14 39 39 H 1.09004 * 110.01084 * 298.38167 * 17 16 14 40 40 H 1.09008 * 110.71945 * 219.44562 * 18 17 16 41 41 H 1.08999 * 110.87970 * 96.24096 * 18 17 16 42 42 H 0.96695 * 114.00316 * 174.45409 * 20 19 18 43 43 H 0.96995 * 119.99891 * 179.97438 * 24 23 21 44 44 H 1.08997 * 110.36822 * 85.33465 * 29 16 14 45 45 H 1.08998 * 110.37034 * 323.01274 * 29 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1814 1.1704 0.0000 4 7 3.5344 1.2308 -0.0049 5 1 3.9693 2.0978 -0.0080 6 6 4.3072 0.0918 -0.0063 7 6 5.6972 0.1645 -0.0119 8 6 6.4414 -0.9948 -0.0137 9 6 5.8199 -2.2364 -0.0105 10 6 4.4564 -2.3308 -0.0050 11 6 3.6837 -1.1690 -0.0020 12 6 2.2123 -1.2243 0.0045 13 7 1.5656 -2.3935 0.0092 14 6 0.2707 -2.4390 0.3338 15 8 -0.1131 -1.9457 1.3801 16 7 -0.6115 -3.0306 -0.4958 17 6 -0.2865 -3.6629 -1.7826 18 6 -1.6015 -4.2261 -2.3615 19 6 -2.4981 -4.3770 -1.1042 20 8 -2.2154 -5.5975 -0.4170 21 6 -3.9580 -4.2913 -1.4684 22 1 -4.4641 -3.3374 -1.4500 23 6 -4.6475 -5.4308 -1.8253 24 7 -5.9331 -5.3642 -2.0942 25 14 -3.7556 -7.0689 -1.9267 26 1 -3.8920 -7.7876 -0.6344 27 1 -4.3482 -7.8887 -3.0139 28 1 -2.3176 -6.8328 -2.2124 29 6 -2.0622 -3.1518 -0.2625 30 1 -0.3633 -0.0929 1.0235 31 1 -0.3633 0.9328 -0.4312 32 1 -0.3634 -0.8399 -0.5921 33 1 1.6203 2.0932 0.0004 34 1 6.1903 1.1254 -0.0141 35 1 7.5198 -0.9374 -0.0177 36 1 6.4189 -3.1350 -0.0124 37 1 3.9795 -3.2998 -0.0030 38 1 0.4272 -4.4721 -1.6283 39 1 0.1328 -2.9242 -2.4658 40 1 -1.4320 -5.1943 -2.8327 41 1 -2.0452 -3.5265 -3.0698 42 1 -2.6896 -5.6967 0.4199 43 1 -6.4181 -6.1657 -2.3457 44 1 -2.5776 -2.2542 -0.6039 45 1 -2.2632 -3.3268 0.7944 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001466742379.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:16 Heat of formation + Delta-G solvation = -7.652510 kcal Electronic energy + Delta-G solvation = -29884.458340 eV Core-core repulsion = 25867.214158 eV Total energy + Delta-G solvation = -4017.244182 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.26948 -41.19966 -39.55489 -38.28615 -36.54450 -36.12405 -34.47737 -33.41455 -32.35111 -31.66456 -30.93312 -29.96219 -28.09447 -27.13521 -25.23561 -24.33169 -23.67070 -22.96906 -21.58380 -20.77305 -19.54449 -19.14929 -18.93842 -18.82913 -17.68650 -17.34011 -17.06443 -16.78751 -16.56589 -15.87148 -15.65357 -15.37539 -15.30797 -14.98991 -14.93598 -14.60156 -14.45487 -14.21441 -14.07996 -13.79016 -13.58441 -13.33472 -13.19247 -13.00658 -12.77128 -12.68779 -12.46203 -12.38752 -12.29710 -12.13855 -12.09906 -11.89152 -11.51936 -11.18156 -10.69955 -10.38546 -10.24684 -10.10957 -9.80175 -9.44333 -8.44211 -8.35871 -6.50006 -0.50943 -0.01202 0.68514 1.46270 1.50695 1.67886 1.75820 1.90521 1.95870 2.33949 2.44514 2.92702 2.95444 3.26785 3.44163 3.54813 3.72991 3.84045 3.93286 3.99183 4.10710 4.19950 4.25203 4.35575 4.40546 4.43754 4.51693 4.58150 4.61750 4.75817 4.77929 4.87132 4.95571 4.99123 5.09715 5.16418 5.18520 5.25118 5.31793 5.43201 5.48206 5.55714 5.62427 5.67739 5.96509 6.02374 6.28461 6.49384 6.56359 6.85649 6.91160 7.27835 7.63871 8.77068 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022089 B = 0.002878 C = 0.002666 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.319183 B = 9727.253498 C =10501.441043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.291 4.291 3 C 0.218 3.782 4 N -0.578 5.578 5 H 0.446 0.554 6 C 0.175 3.825 7 C -0.154 4.154 8 C -0.052 4.052 9 C -0.153 4.153 10 C -0.056 4.056 11 C -0.139 4.139 12 C 0.325 3.675 13 N -0.653 5.653 14 C 0.692 3.308 15 O -0.634 6.634 16 N -0.617 5.617 17 C 0.129 3.871 18 C -0.115 4.115 19 C 0.217 3.783 20 O -0.561 6.561 21 C -0.544 4.544 22 H 0.047 0.953 23 C 0.029 3.971 24 N -0.934 5.934 25 Si 0.997 3.003 26 H -0.288 1.288 27 H -0.329 1.329 28 H -0.248 1.248 29 C 0.113 3.887 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.038 0.962 33 H 0.215 0.785 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.147 0.853 37 H 0.115 0.885 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.087 0.913 42 H 0.376 0.624 43 H 0.268 0.732 44 H 0.062 0.938 45 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 30.798 18.332 1.515 35.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.302 4.302 3 C 0.083 3.917 4 N -0.186 5.186 5 H 0.288 0.712 6 C 0.070 3.930 7 C -0.174 4.174 8 C -0.072 4.072 9 C -0.172 4.172 10 C -0.075 4.075 11 C -0.143 4.143 12 C 0.165 3.835 13 N -0.390 5.390 14 C 0.398 3.602 15 O -0.518 6.518 16 N -0.351 5.351 17 C 0.006 3.994 18 C -0.153 4.153 19 C 0.176 3.824 20 O -0.370 6.370 21 C -0.582 4.582 22 H 0.066 0.934 23 C -0.171 4.171 24 N -0.572 5.572 25 Si 0.829 3.171 26 H -0.215 1.215 27 H -0.261 1.261 28 H -0.173 1.173 29 C -0.011 4.011 30 H 0.080 0.920 31 H 0.102 0.898 32 H 0.057 0.943 33 H 0.232 0.768 34 H 0.197 0.803 35 H 0.188 0.812 36 H 0.165 0.835 37 H 0.133 0.867 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.097 0.903 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.077 0.923 44 H 0.080 0.920 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 30.898 17.523 1.436 35.550 hybrid contribution -1.616 -0.506 0.624 1.804 sum 29.283 17.017 2.060 33.931 Atomic orbital electron populations 1.20964 0.90858 1.01895 1.01865 1.19984 0.97056 0.93192 1.20001 1.21938 0.83097 0.99767 0.86878 1.41270 1.04438 1.09218 1.63680 0.71188 1.18070 0.92441 0.84900 0.97570 1.21126 0.88711 1.01905 1.05678 1.21619 1.02096 0.90680 0.92768 1.21207 0.93292 1.00134 1.02568 1.20937 0.94779 0.97214 0.94613 1.18582 0.89659 0.94307 1.11788 1.20305 0.92666 0.88174 0.82384 1.68094 1.08495 1.26977 1.35448 1.16667 0.83236 0.77049 0.83294 1.90842 1.80871 1.51986 1.28106 1.48005 1.07304 1.59137 1.20702 1.21753 0.97283 0.96301 0.84043 1.22885 0.93406 1.01621 0.97402 1.20136 0.92618 0.80443 0.89186 1.86250 1.71628 1.40660 1.38449 1.21298 0.93789 0.95335 1.47732 0.93432 1.25795 0.95080 1.03469 0.92745 1.70061 1.09552 1.30895 1.46720 0.84940 0.79153 0.77099 0.75895 1.21483 1.26073 1.17335 1.22630 0.79392 0.99426 0.99673 0.91996 0.89810 0.94337 0.76847 0.80347 0.81203 0.83503 0.86655 0.92539 0.91597 0.90275 0.89454 0.77537 0.92301 0.92025 0.92837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.12 8.00 71.23 0.57 -2.55 16 2 C -0.29 -7.67 5.73 -19.84 -0.11 -7.78 16 3 C 0.22 2.70 10.68 83.41 0.89 3.59 16 4 N -0.58 -4.06 5.31 -188.02 -1.00 -5.05 16 5 H 0.45 -1.42 8.79 -92.71 -0.81 -2.24 16 6 C 0.17 2.30 6.66 39.05 0.26 2.56 16 7 C -0.15 -0.93 9.92 22.39 0.22 -0.71 16 8 C -0.05 -0.37 10.01 22.30 0.22 -0.14 16 9 C -0.15 -2.05 9.97 22.05 0.22 -1.83 16 10 C -0.06 -1.24 9.60 22.22 0.21 -1.03 16 11 C -0.14 -3.28 5.89 -20.01 -0.12 -3.40 16 12 C 0.33 10.42 6.63 41.99 0.28 10.70 16 13 N -0.65 -26.35 9.36 -314.07 -2.94 -29.29 16 14 C 0.69 31.43 4.97 179.43 0.89 32.32 16 15 O -0.63 -31.77 13.82 -4.91 -0.07 -31.84 16 16 N -0.62 -27.40 2.62 -830.61 -2.18 -29.57 16 17 C 0.13 5.20 6.82 86.73 0.59 5.80 16 18 C -0.12 -4.96 5.83 31.78 0.19 -4.77 16 19 C 0.22 10.47 0.69 -10.15 -0.01 10.46 16 20 O -0.56 -26.59 8.49 -148.98 -1.26 -27.85 16 21 C -0.54 -30.67 8.88 25.60 0.23 -30.44 16 22 H 0.05 2.94 7.98 -2.91 -0.02 2.92 16 23 C 0.03 1.69 5.47 84.66 0.46 2.16 16 24 N -0.93 -57.99 13.96 21.45 0.30 -57.69 16 25 Si 1.00 49.52 25.15 68.60 1.72 51.25 16 26 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 27 H -0.33 -16.55 7.11 99.48 0.71 -15.85 16 28 H -0.25 -11.93 4.91 99.48 0.49 -11.45 16 29 C 0.11 5.29 6.10 86.85 0.53 5.82 16 30 H 0.06 2.37 6.11 -2.38 -0.01 2.35 16 31 H 0.08 1.94 8.00 -2.39 -0.02 1.92 16 32 H 0.04 1.49 5.00 -2.39 -0.01 1.48 16 33 H 0.22 0.55 8.00 -2.91 -0.02 0.52 16 34 H 0.18 -0.50 8.06 -2.91 -0.02 -0.52 16 35 H 0.17 -0.06 8.06 -2.91 -0.02 -0.08 16 36 H 0.15 1.38 8.06 -2.91 -0.02 1.35 16 37 H 0.12 3.13 7.71 -2.91 -0.02 3.11 16 38 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 39 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 40 H 0.08 3.39 6.54 -2.38 -0.02 3.37 16 41 H 0.09 3.65 8.03 -2.39 -0.02 3.64 16 42 H 0.38 16.26 8.92 -74.06 -0.66 15.60 16 43 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 44 H 0.06 2.91 7.97 -2.39 -0.02 2.89 16 45 H 0.05 2.60 8.04 -2.39 -0.02 2.58 16 Total: -1.00 -90.89 359.50 -0.53 -91.42 By element: Atomic # 1 Polarization: 18.52 SS G_CDS: -0.64 Total: 17.88 kcal Atomic # 6 Polarization: 15.22 SS G_CDS: 5.53 Total: 20.75 kcal Atomic # 7 Polarization: -115.80 SS G_CDS: -5.81 Total: -121.61 kcal Atomic # 8 Polarization: -58.36 SS G_CDS: -1.33 Total: -59.69 kcal Atomic # 14 Polarization: 49.52 SS G_CDS: 1.72 Total: 51.25 kcal Total: -90.89 -0.53 -91.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466742379.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.770 kcal (2) G-P(sol) polarization free energy of solvation -90.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds