Wall clock time and date at job start Sat Apr 11 2020 06:19:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17393 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39719 * 119.99535 * 272.63957 * 3 2 1 5 5 C 1.37599 * 120.00284 * 179.72071 * 4 3 2 6 6 C 1.39742 * 119.99594 * 0.55900 * 5 4 3 7 7 C 1.47686 * 120.00527 * 179.74554 * 6 5 4 8 8 O 1.21574 * 119.99887 * 179.97438 * 7 6 5 9 9 N 1.34777 * 119.99785 * 359.96724 * 7 6 5 10 10 C 1.46496 * 119.99632 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47140 * 180.02562 * 10 9 7 12 12 C 1.30999 * 120.00323 * 125.00204 * 11 10 9 13 13 C 1.50696 * 120.00119 * 180.02562 * 12 11 10 14 14 N 1.46904 * 109.47249 * 124.99921 * 13 12 11 15 15 C 1.46901 * 111.00140 * 179.97438 * 14 13 12 16 16 C 1.50705 * 109.47097 * 180.02562 * 15 14 13 17 17 O 1.21288 * 119.99840 * 359.97438 * 16 15 14 18 18 N 1.34772 * 120.00055 * 180.02562 * 16 15 14 19 19 C 1.37094 * 119.99919 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00342 * 359.97438 * 19 18 16 21 21 C 1.38954 * 119.99664 * 179.97438 * 19 18 16 22 22 N 1.31409 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99874 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46878 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46797 * 119.99889 * 23 21 19 26 26 H 1.48490 * 109.47223 * 239.99989 * 23 21 19 27 27 C 1.39748 * 119.99041 * 359.71553 * 6 5 4 28 28 C 1.37594 * 119.99851 * 0.02562 * 27 6 5 29 29 H 4.51949 * 14.06506 * 359.97438 * 4 2 1 30 30 H 1.08000 * 119.99463 * 0.02562 * 4 3 2 31 31 H 1.07994 * 120.00280 * 180.27307 * 5 4 3 32 32 H 0.96996 * 119.99870 * 0.02562 * 9 7 6 33 33 H 1.08995 * 109.47466 * 300.00792 * 10 9 7 34 34 H 1.09003 * 109.47189 * 60.00636 * 10 9 7 35 35 H 1.08000 * 119.99807 * 305.00754 * 11 10 9 36 36 H 1.07997 * 119.99579 * 0.02562 * 12 11 10 37 37 H 1.08999 * 109.47290 * 244.99764 * 13 12 11 38 38 H 1.09004 * 109.47488 * 4.99954 * 13 12 11 39 39 H 1.00904 * 110.99859 * 56.04201 * 14 13 12 40 40 H 1.08999 * 109.47112 * 300.00004 * 15 14 13 41 41 H 1.09003 * 109.47069 * 59.99971 * 15 14 13 42 42 H 0.97002 * 119.99603 * 359.97438 * 18 16 15 43 43 H 0.97007 * 119.99787 * 180.02562 * 22 21 19 44 44 H 1.08008 * 120.00193 * 180.02562 * 27 6 5 45 45 H 1.08005 * 119.99755 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3045 -0.0548 1.2088 5 6 4.6805 -0.0600 1.2087 6 6 5.3793 0.0020 0.0001 7 6 6.8561 0.0021 0.0001 8 8 7.4640 0.0555 -1.0514 9 7 7.5300 -0.0569 1.1658 10 6 8.9950 -0.0562 1.1658 11 6 9.4974 -0.1288 2.5847 12 6 10.3297 -1.0770 2.9372 13 6 10.8316 -1.1499 4.3563 14 7 10.5489 -2.4817 4.9079 15 6 11.0259 -2.5899 6.2931 16 6 10.7195 -3.9668 6.8238 17 8 10.1586 -4.7779 6.1177 18 7 11.0680 -4.2965 8.0832 19 6 10.7897 -5.5492 8.5658 20 1 10.2910 -6.2717 7.9368 21 6 11.1495 -5.8892 9.8641 22 7 11.7559 -5.0099 10.6296 23 14 10.7698 -7.5959 10.5219 24 1 10.0868 -8.3911 9.4700 25 1 12.0352 -8.2702 10.9084 26 1 9.8861 -7.4832 11.7100 27 6 4.6804 0.0632 -1.2085 28 6 3.3045 0.0630 -1.2083 29 1 -1.0500 0.0005 0.0001 30 1 2.7644 -0.0985 2.1430 31 1 5.2204 -0.1073 2.1428 32 1 7.0450 -0.0998 2.0047 33 1 9.3587 -0.9187 0.6073 34 1 9.3579 0.8589 0.6979 35 1 9.1712 0.6009 3.3110 36 1 10.6561 -1.8064 2.2108 37 1 11.9068 -0.9713 4.3710 38 1 10.3293 -0.3930 4.9587 39 1 10.9501 -3.2051 4.3300 40 1 12.1024 -2.4215 6.3208 41 1 10.5253 -1.8430 6.9092 42 1 11.5163 -3.6477 8.6480 43 1 12.0074 -5.2475 11.5359 44 1 5.2203 0.1107 -2.1427 45 1 2.7644 0.1107 -2.1424 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001497659299.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:23 Heat of formation + Delta-G solvation = 25.976446 kcal Electronic energy + Delta-G solvation = -26034.376273 eV Core-core repulsion = 22018.590351 eV Total energy + Delta-G solvation = -4015.785921 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.57881 -38.88541 -38.35169 -36.77567 -35.31854 -34.33227 -33.92974 -32.95164 -31.50035 -31.23814 -30.88016 -28.50715 -26.32043 -24.85626 -24.01187 -23.05779 -22.48479 -21.13737 -20.14734 -19.45887 -19.18987 -18.24476 -17.89324 -16.64984 -16.29673 -16.10118 -15.66991 -15.49027 -15.34357 -15.16355 -14.71417 -14.44929 -14.26837 -14.08391 -14.01735 -13.70413 -13.61685 -13.55088 -13.20988 -12.69725 -12.53446 -12.33273 -11.89151 -11.79288 -11.60385 -11.57903 -11.52934 -11.22564 -11.07619 -10.95100 -10.39408 -10.35752 -10.24494 -9.66314 -9.54110 -9.53939 -9.30581 -9.00664 -8.49537 -8.08762 -7.98085 -6.43811 -3.84643 0.06025 0.87681 1.79275 2.10438 2.23792 2.90760 3.00276 3.15014 3.25804 3.33154 3.55439 3.71734 3.88421 4.09866 4.29289 4.31839 4.36762 4.45753 4.64503 4.79001 4.82205 4.99273 5.03899 5.09548 5.20706 5.24632 5.32343 5.35133 5.44891 5.47246 5.49149 5.65165 5.76518 5.78691 5.85845 5.90586 5.93248 6.02723 6.22912 6.31239 6.39468 6.55078 7.01158 7.13235 7.16545 7.53616 7.59012 7.86069 8.04442 8.59024 9.15977 9.52051 10.03370 10.73933 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011241 B = 0.001530 C = 0.001380 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2490.282059 B =18301.876601 C =20283.009420 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.158 4.158 3 C 0.034 3.966 4 C -0.102 4.102 5 C -0.082 4.082 6 C -0.126 4.126 7 C 0.557 3.443 8 O -0.538 6.538 9 N -0.719 5.719 10 C 0.153 3.847 11 C -0.186 4.186 12 C -0.108 4.108 13 C 0.081 3.919 14 N -0.665 5.665 15 C 0.050 3.950 16 C 0.440 3.560 17 O -0.583 6.583 18 N -0.563 5.563 19 C -0.300 4.300 20 H 0.104 0.896 21 C 0.022 3.978 22 N -0.901 5.901 23 Si 0.929 3.071 24 H -0.268 1.268 25 H -0.282 1.282 26 H -0.281 1.281 27 C -0.058 4.058 28 C -0.105 4.105 29 H 0.226 0.774 30 H 0.135 0.865 31 H 0.135 0.865 32 H 0.403 0.597 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.117 0.883 36 H 0.113 0.887 37 H 0.040 0.960 38 H 0.077 0.923 39 H 0.350 0.650 40 H 0.044 0.956 41 H 0.086 0.914 42 H 0.392 0.608 43 H 0.271 0.729 44 H 0.142 0.858 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.682 16.187 -19.027 28.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.034 3.966 4 C -0.120 4.120 5 C -0.101 4.101 6 C -0.129 4.129 7 C 0.344 3.656 8 O -0.416 6.416 9 N -0.371 5.371 10 C 0.031 3.969 11 C -0.205 4.205 12 C -0.128 4.128 13 C -0.047 4.047 14 N -0.298 5.298 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.122 0.878 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.192 1.192 25 H -0.208 1.208 26 H -0.207 1.207 27 C -0.077 4.077 28 C -0.123 4.123 29 H 0.243 0.757 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.239 0.761 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.135 0.865 36 H 0.131 0.869 37 H 0.058 0.942 38 H 0.095 0.905 39 H 0.170 0.830 40 H 0.062 0.938 41 H 0.105 0.895 42 H 0.225 0.775 43 H 0.081 0.919 44 H 0.160 0.840 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -14.148 15.804 -19.857 29.056 hybrid contribution 0.692 -0.480 1.223 1.485 sum -13.456 15.323 -18.634 27.624 Atomic orbital electron populations 1.24971 0.95825 0.98298 0.98835 1.19999 0.92020 1.02001 1.01770 1.16189 0.86775 0.99800 0.93870 1.21165 0.93791 0.99604 0.97447 1.21271 0.94167 0.97300 0.97364 1.20073 0.92973 1.05351 0.94501 1.18218 0.87064 0.76447 0.83822 1.90788 1.69844 1.49775 1.31164 1.45934 1.07563 1.74823 1.08800 1.20339 0.79000 1.02704 0.94897 1.22724 1.00569 1.00725 0.96501 1.22893 0.96618 0.96451 0.96797 1.21094 0.98354 0.92871 0.92429 1.60136 1.64039 1.03155 1.02432 1.21694 0.98078 0.97962 0.90531 1.19795 0.85236 0.88909 0.83507 1.90527 1.46332 1.51754 1.58088 1.41866 1.52445 1.14443 1.11260 1.19765 1.36022 0.90118 0.97006 0.87841 1.25265 0.96884 0.99712 0.96071 1.69622 1.40634 1.34918 1.09114 0.85799 0.78087 0.81663 0.78795 1.19207 1.20761 1.20732 1.21201 0.93395 0.95068 0.98016 1.21192 0.93758 0.99972 0.97353 0.75715 0.84707 0.84775 0.76060 0.90838 0.90620 0.86490 0.86880 0.94248 0.90468 0.83017 0.93772 0.89540 0.77454 0.91916 0.83976 0.84801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.98 19.25 29.55 0.57 -0.41 16 2 C -0.16 -1.26 13.23 -38.84 -0.51 -1.78 16 3 C 0.03 0.28 5.73 -106.87 -0.61 -0.33 16 4 C -0.10 -0.75 9.73 -39.26 -0.38 -1.14 16 5 C -0.08 -0.60 9.52 -39.25 -0.37 -0.98 16 6 C -0.13 -1.14 5.88 -104.91 -0.62 -1.76 16 7 C 0.56 6.00 7.77 -12.40 -0.10 5.90 16 8 O -0.54 -7.55 16.33 5.30 0.09 -7.47 16 9 N -0.72 -6.33 5.50 -62.48 -0.34 -6.68 16 10 C 0.15 1.37 6.11 -5.20 -0.03 1.34 16 11 C -0.19 -1.58 9.24 -36.03 -0.33 -1.91 16 12 C -0.11 -1.07 9.38 -36.03 -0.34 -1.40 16 13 C 0.08 0.92 6.12 -4.98 -0.03 0.89 16 14 N -0.67 -10.33 6.12 -116.33 -0.71 -11.04 16 15 C 0.05 0.85 6.17 -4.97 -0.03 0.82 16 16 C 0.44 10.28 7.82 -10.98 -0.09 10.19 16 17 O -0.58 -15.76 15.78 5.55 0.09 -15.68 16 18 N -0.56 -14.15 5.29 -10.96 -0.06 -14.21 16 19 C -0.30 -8.32 9.68 -14.93 -0.14 -8.47 16 20 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 21 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.33 13.05 55.50 0.72 -23.61 16 23 Si 0.93 20.92 29.55 -169.99 -5.02 15.90 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 26 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 27 C -0.06 -0.50 9.57 -39.25 -0.38 -0.87 16 28 C -0.10 -0.80 9.73 -39.27 -0.38 -1.18 16 29 H 0.23 0.49 7.80 -54.09 -0.42 0.07 16 30 H 0.14 0.78 8.06 -52.49 -0.42 0.36 16 31 H 0.13 0.68 6.38 -52.49 -0.34 0.35 16 32 H 0.40 2.73 6.48 -40.82 -0.26 2.47 16 33 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 34 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.12 0.88 7.84 -52.49 -0.41 0.46 16 36 H 0.11 1.09 7.84 -52.49 -0.41 0.68 16 37 H 0.04 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.81 7.79 -51.93 -0.40 0.41 16 39 H 0.35 5.64 8.42 -39.29 -0.33 5.31 16 40 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 41 H 0.09 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.39 9.37 7.90 -40.82 -0.32 9.05 16 43 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 44 H 0.14 1.17 7.64 -52.48 -0.40 0.77 16 45 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -34.58 403.41 -8.79 -43.37 By element: Atomic # 1 Polarization: 19.67 SS G_CDS: -5.76 Total: 13.92 kcal Atomic # 6 Polarization: 3.29 SS G_CDS: -3.87 Total: -0.59 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.39 Total: -55.54 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.17 Total: -23.14 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.58 -8.79 -43.37 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001497659299.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.348 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.788 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds