Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17401 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39620 * 120.06191 * 173.32433 * 3 2 1 5 5 C 1.37789 * 119.93422 * 179.71558 * 4 3 2 6 6 C 1.39074 * 120.06258 * 0.56337 * 5 4 3 7 7 N 1.39581 * 119.93316 * 179.69135 * 6 5 4 8 8 C 1.34777 * 120.00148 * 324.04332 * 7 6 5 9 9 O 1.21376 * 119.99969 * 3.45333 * 8 7 6 10 10 C 1.49335 * 119.99812 * 183.44542 * 8 7 6 11 11 O 1.21358 * 120.00300 * 353.46793 * 10 8 7 12 12 N 1.34780 * 119.99751 * 173.46121 * 10 8 7 13 13 C 1.47079 * 120.87880 * 171.57057 * 12 10 8 14 14 C 1.53695 * 108.27506 * 128.75294 * 13 12 10 15 15 N 1.46899 * 109.25484 * 54.08255 * 14 13 12 16 16 C 1.46906 * 110.99701 * 172.60410 * 15 14 13 17 17 C 1.50698 * 109.47301 * 294.30043 * 16 15 14 18 18 H 1.07996 * 119.99846 * 0.02562 * 17 16 15 19 19 C 1.37879 * 119.99643 * 180.02562 * 17 16 15 20 20 N 1.31514 * 119.99468 * 179.97438 * 19 17 16 21 21 Si 1.86794 * 120.00306 * 0.02562 * 19 17 16 22 22 H 1.48499 * 109.47241 * 90.00136 * 21 19 17 23 23 H 1.48498 * 109.47030 * 209.99859 * 21 19 17 24 24 H 1.48494 * 109.47228 * 329.99998 * 21 19 17 25 25 C 1.46892 * 111.27124 * 296.75355 * 15 14 13 26 26 C 1.47075 * 120.88082 * 351.84755 * 12 10 8 27 27 C 1.39065 * 120.13073 * 359.71612 * 6 5 4 28 28 C 1.37785 * 120.06709 * 359.97438 * 27 6 5 29 29 H 4.51992 * 14.04256 * 359.97438 * 4 2 1 30 30 H 1.08004 * 120.03810 * 359.97438 * 4 3 2 31 31 H 1.08002 * 119.97054 * 180.27264 * 5 4 3 32 32 H 0.96997 * 119.99308 * 144.03836 * 7 6 5 33 33 H 1.09000 * 109.62868 * 248.52165 * 13 12 10 34 34 H 1.09002 * 109.62914 * 9.10336 * 13 12 10 35 35 H 1.08996 * 109.65297 * 294.07663 * 14 13 12 36 36 H 1.09000 * 109.42057 * 173.94367 * 14 13 12 37 37 H 1.09001 * 109.46938 * 54.30709 * 16 15 14 38 38 H 1.09001 * 109.46730 * 174.30285 * 16 15 14 39 39 H 0.96999 * 119.99972 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.49293 * 303.14813 * 25 15 14 41 41 H 1.09001 * 109.49858 * 183.06726 * 25 15 14 42 42 H 1.08998 * 109.63024 * 350.89818 * 26 12 10 43 43 H 1.09000 * 109.62957 * 111.48058 * 26 12 10 44 44 H 1.08001 * 119.96918 * 179.97438 * 27 6 5 45 45 H 1.08005 * 120.03268 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3049 1.2011 -0.1405 5 6 4.6828 1.1994 -0.1342 6 6 5.3773 0.0020 0.0001 7 7 6.7732 0.0027 -0.0004 8 6 7.4464 0.8654 -0.7872 9 8 6.8406 1.6837 -1.4479 10 6 8.9377 0.8145 -0.8459 11 8 9.5497 0.0794 -0.0990 12 7 9.6040 1.5850 -1.7284 13 6 11.0703 1.6909 -1.6818 14 6 11.6189 1.4083 -3.0894 15 7 10.9626 2.3015 -4.0535 16 6 11.5807 2.1881 -5.3813 17 6 12.9987 2.6944 -5.3203 18 1 13.4008 3.0631 -4.3882 19 6 13.7828 2.6869 -6.4544 20 7 15.0202 3.1292 -6.4012 21 14 13.0871 2.0499 -8.0667 22 1 12.4568 3.1699 -8.8108 23 1 14.1826 1.4678 -8.8829 24 1 12.0688 1.0056 -7.7882 25 6 9.5181 2.0432 -4.1213 26 6 8.8838 2.3470 -2.7598 27 6 4.6840 -1.1959 0.1343 28 6 3.3061 -1.1997 0.1352 29 1 -1.0499 -0.0012 -0.0004 30 1 2.7661 2.1308 -0.2497 31 1 5.2240 2.1282 -0.2384 32 1 7.2585 -0.6177 0.5655 33 1 11.3551 2.6956 -1.3693 34 1 11.4680 0.9592 -0.9786 35 1 11.4188 0.3715 -3.3595 36 1 12.6941 1.5868 -3.1018 37 1 11.5807 1.1440 -5.6941 38 1 11.0134 2.7820 -6.0980 39 1 15.5719 3.1236 -7.1990 40 1 9.3472 0.9975 -4.3770 41 1 9.0697 2.6821 -4.8822 42 1 7.8353 2.0492 -2.7698 43 1 8.9624 3.4135 -2.5491 44 1 5.2260 -2.1243 0.2380 45 1 2.7682 -2.1305 0.2390 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001516454130.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = 51.889696 kcal Electronic energy + Delta-G solvation = -28330.520849 eV Core-core repulsion = 24315.858610 eV Total energy + Delta-G solvation = -4014.662238 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.49473 -39.93719 -38.64601 -37.79063 -35.89011 -34.49735 -33.40721 -32.40422 -31.47828 -30.91887 -29.83377 -28.95497 -26.39646 -25.02691 -23.71400 -23.26349 -22.71044 -21.52432 -20.72789 -19.62649 -19.39214 -18.23047 -17.67462 -16.89559 -16.74054 -16.40420 -16.07612 -15.71940 -15.20741 -14.77814 -14.65576 -14.52763 -14.37160 -14.20262 -14.01149 -13.83866 -13.57328 -13.51920 -13.10466 -12.83438 -12.45353 -12.36050 -12.07995 -11.72702 -11.62811 -11.51598 -11.24211 -11.00720 -10.86555 -10.85540 -10.59310 -10.45998 -10.42562 -9.97144 -9.51460 -9.39878 -9.24289 -8.74417 -8.61998 -8.42922 -7.50699 -6.10598 -4.08708 0.34693 0.96415 1.19007 2.00574 2.35157 2.56738 2.96118 3.22113 3.24865 3.32745 3.34118 3.58969 3.86941 4.00092 4.37220 4.46231 4.51103 4.62577 4.87955 4.99054 5.09737 5.17858 5.20900 5.24446 5.30628 5.48682 5.53067 5.57462 5.68981 5.72881 5.79815 5.83952 5.90695 6.04972 6.09593 6.11926 6.25861 6.35180 6.46153 6.51426 6.66461 6.77493 6.88830 7.13309 7.15086 7.39237 7.50280 7.72923 7.78166 7.91704 8.57630 8.96520 9.50719 11.02197 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021130 B = 0.002052 C = 0.001943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1324.827881 B =13644.565821 C =14406.927226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.146 4.146 3 C -0.008 4.008 4 C -0.074 4.074 5 C -0.117 4.117 6 C 0.152 3.848 7 N -0.647 5.647 8 C 0.512 3.488 9 O -0.488 6.488 10 C 0.506 3.494 11 O -0.528 6.528 12 N -0.570 5.570 13 C 0.111 3.889 14 C 0.051 3.949 15 N -0.528 5.528 16 C 0.162 3.838 17 C -0.513 4.513 18 H 0.082 0.918 19 C 0.070 3.930 20 N -0.898 5.898 21 Si 0.875 3.125 22 H -0.275 1.275 23 H -0.286 1.286 24 H -0.269 1.269 25 C 0.037 3.963 26 C 0.080 3.920 27 C -0.138 4.138 28 C -0.076 4.076 29 H 0.224 0.776 30 H 0.132 0.868 31 H 0.146 0.854 32 H 0.425 0.575 33 H 0.084 0.916 34 H 0.093 0.907 35 H 0.027 0.973 36 H 0.106 0.894 37 H -0.011 1.011 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.026 0.974 41 H 0.084 0.916 42 H 0.130 0.870 43 H 0.080 0.920 44 H 0.135 0.865 45 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.031 -7.679 15.042 30.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.146 4.146 3 C -0.009 4.009 4 C -0.093 4.093 5 C -0.137 4.137 6 C 0.058 3.942 7 N -0.293 5.293 8 C 0.296 3.704 9 O -0.362 6.362 10 C 0.287 3.713 11 O -0.406 6.406 12 N -0.302 5.302 13 C -0.010 4.010 14 C -0.078 4.078 15 N -0.252 5.252 16 C 0.036 3.964 17 C -0.551 4.551 18 H 0.100 0.900 19 C -0.132 4.132 20 N -0.537 5.537 21 Si 0.702 3.298 22 H -0.201 1.201 23 H -0.212 1.212 24 H -0.194 1.194 25 C -0.093 4.093 26 C -0.042 4.042 27 C -0.158 4.158 28 C -0.094 4.094 29 H 0.240 0.760 30 H 0.150 0.850 31 H 0.163 0.837 32 H 0.263 0.737 33 H 0.102 0.898 34 H 0.112 0.888 35 H 0.045 0.955 36 H 0.124 0.876 37 H 0.007 0.993 38 H 0.044 0.956 39 H 0.074 0.926 40 H 0.044 0.956 41 H 0.103 0.897 42 H 0.147 0.853 43 H 0.098 0.902 44 H 0.153 0.847 45 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -24.787 -6.952 14.968 29.779 hybrid contribution -0.236 -1.377 -1.127 1.795 sum -25.023 -8.329 13.842 29.784 Atomic orbital electron populations 1.24892 0.95783 0.99252 0.99796 1.20015 0.91979 1.01385 1.01212 1.15986 0.86695 0.93978 1.04198 1.21117 0.93385 0.97304 0.97499 1.21228 0.93838 0.97878 1.00761 1.17865 0.81935 0.94152 1.00229 1.43191 1.04854 1.38370 1.42907 1.20546 0.89268 0.81217 0.79413 1.90578 1.69636 1.35327 1.40698 1.19642 0.87262 0.81877 0.82490 1.90761 1.68880 1.38521 1.42429 1.48169 1.08559 1.43634 1.29838 1.22196 0.76760 1.03177 0.98898 1.22454 1.01309 0.93963 0.90057 1.61935 1.00509 1.52075 1.10708 1.20185 0.96098 0.94857 0.85244 1.21003 0.94270 1.41790 0.98015 0.90031 1.24894 0.94745 0.94924 0.98678 1.69887 1.07532 1.46854 1.29389 0.86866 0.78984 0.79682 0.84246 1.20089 1.21171 1.19360 1.22504 0.91066 0.99176 0.96520 1.22936 0.98581 0.96901 0.85752 1.20870 0.94144 0.96585 1.04214 1.20973 0.93096 0.97270 0.98076 0.75951 0.84998 0.83664 0.73696 0.89798 0.88826 0.95479 0.87598 0.99329 0.95551 0.92593 0.95586 0.89741 0.85340 0.90179 0.84741 0.85006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.21 19.25 29.55 0.57 -0.64 16 2 C -0.15 -1.27 13.23 -38.84 -0.51 -1.78 16 3 C -0.01 -0.07 5.73 -106.94 -0.61 -0.68 16 4 C -0.07 -0.66 9.74 -39.23 -0.38 -1.04 16 5 C -0.12 -1.12 8.66 -39.44 -0.34 -1.47 16 6 C 0.15 1.40 6.28 -83.71 -0.53 0.87 16 7 N -0.65 -6.04 5.31 -10.27 -0.05 -6.10 16 8 C 0.51 6.03 7.56 -11.64 -0.09 5.94 16 9 O -0.49 -6.24 10.71 5.47 0.06 -6.18 16 10 C 0.51 6.92 7.74 -11.64 -0.09 6.83 16 11 O -0.53 -7.94 15.96 5.49 0.09 -7.85 16 12 N -0.57 -8.28 3.00 -172.74 -0.52 -8.79 16 13 C 0.11 1.70 6.65 -3.36 -0.02 1.67 16 14 C 0.05 0.93 5.47 -3.46 -0.02 0.92 16 15 N -0.53 -10.52 4.62 -235.47 -1.09 -11.61 16 16 C 0.16 3.81 3.79 -4.97 -0.02 3.79 16 17 C -0.51 -14.09 8.96 -34.44 -0.31 -14.40 16 18 H 0.08 2.42 7.37 -52.49 -0.39 2.03 16 19 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 20 N -0.90 -26.94 13.96 55.43 0.77 -26.17 16 21 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 H -0.27 -6.29 6.54 56.52 0.37 -5.92 16 25 C 0.04 0.60 5.62 -3.70 -0.02 0.58 16 26 C 0.08 1.13 6.10 -3.60 -0.02 1.11 16 27 C -0.14 -1.04 9.95 -39.44 -0.39 -1.43 16 28 C -0.08 -0.58 9.74 -39.23 -0.38 -0.96 16 29 H 0.22 0.64 7.80 -54.09 -0.42 0.22 16 30 H 0.13 0.97 8.06 -52.48 -0.42 0.54 16 31 H 0.15 1.48 6.31 -52.49 -0.33 1.15 16 32 H 0.42 3.25 8.30 -40.82 -0.34 2.92 16 33 H 0.08 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.09 1.36 7.05 -51.93 -0.37 1.00 16 35 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.11 2.13 6.67 -51.93 -0.35 1.78 16 37 H -0.01 -0.26 7.19 -51.93 -0.37 -0.64 16 38 H 0.03 0.62 7.40 -51.93 -0.38 0.24 16 39 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 40 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.08 1.31 7.99 -51.93 -0.41 0.90 16 42 H 0.13 1.72 4.45 -54.17 -0.24 1.48 16 43 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 44 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 45 H 0.13 0.76 8.06 -52.48 -0.42 0.33 16 LS Contribution 377.29 15.07 5.69 5.69 Total: -1.00 -32.21 377.29 -8.72 -40.93 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -5.73 Total: 2.44 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -3.27 Total: 1.18 kcal Atomic # 7 Polarization: -51.78 SS G_CDS: -0.89 Total: -52.67 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: 0.15 Total: -14.03 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.21 -8.72 -40.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001516454130.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.823 kcal (2) G-P(sol) polarization free energy of solvation -32.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.613 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds