Wall clock time and date at job start Sat Apr 11 2020 06:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47500 * 239.99765 * 2 1 3 5 5 C 1.53009 * 109.47252 * 119.99934 * 2 1 3 6 6 N 1.46503 * 109.46868 * 63.45153 * 5 2 1 7 7 C 1.46503 * 120.00043 * 85.53532 * 6 5 2 8 8 C 1.52992 * 109.47057 * 65.84065 * 7 6 5 9 9 O 1.42900 * 109.47273 * 65.00520 * 8 7 6 10 10 S 1.65599 * 119.99830 * 265.80587 * 6 5 2 11 11 O 1.42100 * 106.40400 * 23.26824 * 10 6 5 12 12 O 1.42110 * 106.39737 * 156.18649 * 10 6 5 13 13 C 1.76193 * 107.22036 * 269.72510 * 10 6 5 14 14 C 1.38641 * 119.75259 * 269.73100 * 13 10 6 15 15 C 1.37613 * 120.24848 * 179.71697 * 14 13 10 16 16 C 1.40717 * 119.74776 * 0.57359 * 15 14 13 17 17 C 1.41392 * 120.24888 * 179.67448 * 16 15 14 18 18 H 1.07997 * 120.00008 * 326.66809 * 17 16 15 19 19 C 1.39946 * 119.99712 * 146.65454 * 17 16 15 20 20 N 1.30820 * 120.00441 * 348.66522 * 19 17 16 21 21 Si 1.86803 * 119.99630 * 168.66338 * 19 17 16 22 22 H 1.48505 * 109.47274 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47305 * 120.00369 * 21 19 17 24 24 H 1.48504 * 109.46941 * 240.00480 * 21 19 17 25 25 C 1.40720 * 119.50794 * 359.70326 * 16 15 14 26 26 C 1.37617 * 119.74407 * 359.97438 * 25 16 15 27 27 H 1.09000 * 109.47173 * 299.99766 * 1 2 3 28 28 H 1.08995 * 109.47109 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47073 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47026 * 300.00025 * 3 2 1 32 32 H 1.09000 * 109.46824 * 60.00021 * 3 2 1 33 33 H 1.09000 * 109.46817 * 310.63431 * 4 2 1 34 34 H 1.09002 * 109.47141 * 70.62812 * 4 2 1 35 35 H 1.08998 * 109.47541 * 190.63368 * 4 2 1 36 36 H 1.08996 * 109.46626 * 303.45781 * 5 2 1 37 37 H 1.08994 * 109.47454 * 183.45156 * 5 2 1 38 38 H 1.08996 * 109.47449 * 185.84647 * 7 6 5 39 39 H 1.09005 * 109.46611 * 305.84631 * 7 6 5 40 40 H 1.09003 * 109.47202 * 185.00106 * 8 7 6 41 41 H 1.09002 * 109.47667 * 305.00152 * 8 7 6 42 42 H 0.96703 * 114.00303 * 180.02562 * 9 8 7 43 43 H 1.08003 * 119.86879 * 359.97438 * 14 13 10 44 44 H 1.07998 * 120.12570 * 180.27536 * 15 14 13 45 45 H 0.96998 * 119.99724 * 179.97438 * 20 19 17 46 46 H 1.07997 * 120.12650 * 179.97438 * 25 16 15 47 47 H 1.08000 * 119.87166 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.6207 -2.1244 1.2084 7 6 2.4330 -3.1111 0.4921 8 6 3.7828 -3.2674 1.1951 9 8 3.5805 -3.8185 2.4979 10 16 0.2252 -2.5940 1.9662 11 8 -0.5859 -1.4318 2.0696 12 8 -0.2019 -3.7847 1.3187 13 6 0.6539 -3.0497 3.6133 14 6 1.0007 -4.3619 3.8959 15 6 1.3430 -4.7278 5.1776 16 6 1.3283 -3.7669 6.2055 17 6 1.6714 -4.1327 7.5275 18 1 1.4301 -5.1193 7.8946 19 6 2.3238 -3.2164 8.3601 20 7 2.8134 -2.1113 7.8598 21 14 2.4953 -3.5713 10.1861 22 1 1.8619 -4.8778 10.4981 23 1 3.9348 -3.6207 10.5476 24 1 1.8261 -2.4979 10.9640 25 6 0.9690 -2.4392 5.9081 26 6 0.6368 -2.0945 4.6179 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.5302 -1.6795 -1.3490 34 1 1.8398 -0.1098 -2.1290 35 1 3.1134 -0.8885 -1.1595 36 1 1.6269 -0.2444 2.1381 37 1 3.1282 -0.6680 1.2808 38 1 1.9151 -4.0701 0.4826 39 1 2.5935 -2.7747 -0.5322 40 1 4.4203 -3.9336 0.6137 41 1 4.2616 -2.2921 1.2835 42 1 4.3957 -3.9451 3.0024 43 1 1.0064 -5.0988 3.1064 44 1 1.6172 -5.7496 5.3947 45 1 3.2653 -1.4760 8.4370 46 1 0.9539 -1.6937 6.6894 47 1 0.3612 -1.0760 4.3873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645627291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:33 Heat of formation + Delta-G solvation = -114.625683 kcal Electronic energy + Delta-G solvation = -29770.612497 eV Core-core repulsion = 25851.880810 eV Total energy + Delta-G solvation = -3918.731687 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -38.61425 -37.44781 -36.81436 -36.13099 -35.05591 -33.87097 -33.82336 -30.10757 -29.36385 -29.14477 -27.26855 -27.03377 -25.66674 -25.59462 -21.93232 -21.25580 -21.01916 -19.18762 -18.09316 -17.48411 -17.28287 -17.18350 -16.48827 -15.88373 -15.36787 -14.94769 -14.46576 -14.26077 -14.02245 -13.98621 -13.62164 -13.26965 -13.09449 -13.05646 -12.68558 -12.33566 -12.15440 -12.13803 -12.02541 -11.78052 -11.70923 -11.62439 -11.50359 -11.33464 -11.25820 -11.16655 -11.07737 -10.92332 -10.76865 -10.68473 -10.43391 -10.38719 -10.19898 -9.70054 -9.61803 -9.45971 -9.42911 -8.54428 -7.72111 -7.53119 -6.96264 -4.67175 1.31126 2.38621 2.95729 2.97230 3.02048 3.05521 3.66231 3.78047 4.40109 4.47361 4.66297 4.84340 4.86577 4.94436 5.12539 5.27904 5.34681 5.36486 5.49740 5.53703 5.58202 5.60208 5.71258 5.79638 5.81002 5.84445 5.99006 6.03319 6.08191 6.14794 6.20248 6.23554 6.29790 6.34611 6.49662 6.69025 6.78246 6.84712 6.94630 7.11317 7.18038 7.50346 7.54800 7.72635 7.89861 7.98700 8.12660 8.45540 8.65755 8.77264 9.98147 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.003660 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.231026 B = 7647.429889 C = 7802.816797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.091 4.091 3 C -0.137 4.137 4 C -0.141 4.141 5 C 0.139 3.861 6 N -0.990 5.990 7 C 0.111 3.889 8 C 0.058 3.942 9 O -0.549 6.549 10 S 2.689 3.311 11 O -0.977 6.977 12 O -0.989 6.989 13 C -0.762 4.762 14 C 0.025 3.975 15 C -0.233 4.233 16 C 0.149 3.851 17 C -0.453 4.453 18 H 0.084 0.916 19 C 0.074 3.926 20 N -0.784 5.784 21 Si 0.914 3.086 22 H -0.259 1.259 23 H -0.273 1.273 24 H -0.270 1.270 25 C -0.173 4.173 26 C -0.018 4.018 27 H 0.074 0.926 28 H 0.044 0.956 29 H 0.045 0.955 30 H 0.053 0.947 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.044 0.956 42 H 0.376 0.624 43 H 0.099 0.901 44 H 0.097 0.903 45 H 0.284 0.716 46 H 0.114 0.886 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.683 3.873 -12.000 13.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.092 4.092 3 C -0.195 4.195 4 C -0.198 4.198 5 C 0.013 3.987 6 N -0.823 5.823 7 C -0.015 4.015 8 C -0.022 4.022 9 O -0.354 6.354 10 S 2.789 3.211 11 O -0.968 6.968 12 O -0.979 6.979 13 C -0.858 4.858 14 C 0.005 3.995 15 C -0.254 4.254 16 C 0.146 3.854 17 C -0.482 4.482 18 H 0.102 0.898 19 C -0.145 4.145 20 N -0.408 5.408 21 Si 0.738 3.262 22 H -0.182 1.182 23 H -0.198 1.198 24 H -0.195 1.195 25 C -0.194 4.194 26 C -0.039 4.039 27 H 0.093 0.907 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.072 0.928 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.079 0.921 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.114 0.886 39 H 0.107 0.893 40 H 0.063 0.937 41 H 0.062 0.938 42 H 0.222 0.778 43 H 0.117 0.883 44 H 0.115 0.885 45 H 0.095 0.905 46 H 0.132 0.868 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.365 4.101 -12.579 13.652 hybrid contribution 1.499 -0.176 1.606 2.204 sum 4.864 3.926 -10.973 12.628 Atomic orbital electron populations 1.21981 0.93407 1.01871 1.01891 1.21045 0.96938 0.95372 0.95894 1.21799 1.00611 0.95141 1.01989 1.22015 1.00529 1.00486 0.96793 1.21242 1.00056 0.79945 0.97439 1.57525 1.43381 1.13592 1.67822 1.21577 0.91480 0.93111 0.95310 1.22538 0.97146 0.96889 0.85607 1.86717 1.35802 1.85627 1.27209 1.01447 0.72665 0.72557 0.74382 1.93517 1.65615 1.49785 1.87884 1.93458 1.80021 1.48475 1.75975 1.29197 1.34645 1.02457 1.19497 1.20018 0.90721 0.92672 0.96072 1.21071 1.12270 0.99156 0.92900 1.17820 0.83871 0.91465 0.92268 1.19834 1.32058 1.00057 0.96234 0.89787 1.25991 0.93346 0.93900 1.01275 1.69801 1.25162 1.08159 1.37718 0.86164 0.78817 0.79974 0.81273 1.18230 1.19777 1.19511 1.21207 1.05214 0.97676 0.95279 1.20224 0.94576 0.95811 0.93263 0.90680 0.93664 0.93557 0.92800 0.92639 0.92294 0.92105 0.93060 0.92790 0.89982 0.90905 0.88576 0.89313 0.93738 0.93790 0.77788 0.88254 0.88514 0.90535 0.86778 0.88256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.89 6.84 37.15 0.25 -1.64 16 2 C -0.09 -1.08 0.85 -154.51 -0.13 -1.21 16 3 C -0.14 -1.37 8.45 37.16 0.31 -1.06 16 4 C -0.14 -1.45 6.90 37.16 0.26 -1.19 16 5 C 0.14 1.89 4.48 -4.04 -0.02 1.87 16 6 N -0.99 -15.27 2.32 -114.38 -0.26 -15.53 16 7 C 0.11 1.46 5.64 -4.04 -0.02 1.44 16 8 C 0.06 0.70 7.20 37.15 0.27 0.96 16 9 O -0.55 -8.41 12.41 -35.23 -0.44 -8.84 16 10 S 2.69 53.12 4.79 -107.50 -0.52 52.60 16 11 O -0.98 -20.20 12.56 -57.17 -0.72 -20.92 16 12 O -0.99 -21.46 15.77 -57.17 -0.90 -22.36 16 13 C -0.76 -17.13 6.00 -39.29 -0.24 -17.36 16 14 C 0.03 0.58 8.31 -39.66 -0.33 0.25 16 15 C -0.23 -5.63 9.80 -38.87 -0.38 -6.01 16 16 C 0.15 3.84 5.48 -106.82 -0.59 3.25 16 17 C -0.45 -11.42 9.04 -37.74 -0.34 -11.76 16 18 H 0.08 2.03 7.87 -52.49 -0.41 1.62 16 19 C 0.07 1.76 5.21 -17.34 -0.09 1.67 16 20 N -0.78 -19.15 11.20 55.55 0.62 -18.53 16 21 Si 0.91 17.67 29.57 -169.99 -5.03 12.64 16 22 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 23 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 24 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 25 C -0.17 -4.40 8.63 -38.87 -0.34 -4.74 16 26 C -0.02 -0.43 9.49 -39.66 -0.38 -0.81 16 27 H 0.07 1.16 7.31 -51.93 -0.38 0.78 16 28 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 29 H 0.05 0.73 5.76 -51.93 -0.30 0.44 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.67 6.29 -51.93 -0.33 0.34 16 34 H 0.05 0.47 8.11 -51.93 -0.42 0.05 16 35 H 0.05 0.48 7.73 -51.93 -0.40 0.08 16 36 H 0.08 1.22 7.63 -51.93 -0.40 0.83 16 37 H 0.07 0.86 6.67 -51.93 -0.35 0.51 16 38 H 0.10 1.42 6.84 -51.93 -0.36 1.07 16 39 H 0.09 0.92 4.84 -51.93 -0.25 0.67 16 40 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.04 0.48 6.74 -51.93 -0.35 0.13 16 42 H 0.38 4.61 9.12 45.56 0.42 5.03 16 43 H 0.10 2.15 7.59 -52.48 -0.40 1.75 16 44 H 0.10 2.18 8.06 -52.49 -0.42 1.76 16 45 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 46 H 0.11 2.95 6.61 -52.49 -0.35 2.61 16 47 H 0.10 2.16 7.60 -52.49 -0.40 1.76 16 LS Contribution 376.05 15.07 5.67 5.67 Total: -1.00 -30.25 376.05 -9.67 -39.92 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -6.34 Total: 11.68 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: -1.75 Total: -36.32 kcal Atomic # 7 Polarization: -34.42 SS G_CDS: 0.36 Total: -34.06 kcal Atomic # 8 Polarization: -50.06 SS G_CDS: -2.06 Total: -52.12 kcal Atomic # 14 Polarization: 17.67 SS G_CDS: -5.03 Total: 12.64 kcal Atomic # 16 Polarization: 53.12 SS G_CDS: -0.52 Total: 52.60 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.25 -9.67 -39.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645627291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.708 kcal (2) G-P(sol) polarization free energy of solvation -30.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds