Wall clock time and date at job start Sat Apr 11 2020 06:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47284 * 2 1 4 4 C 1.53001 * 109.47500 * 239.99765 * 2 1 3 5 5 C 1.53009 * 109.47252 * 119.99934 * 2 1 3 6 6 N 1.46503 * 109.46868 * 63.45153 * 5 2 1 7 7 C 1.46503 * 120.00043 * 85.53532 * 6 5 2 8 8 C 1.52992 * 109.47057 * 65.84065 * 7 6 5 9 9 O 1.42900 * 109.47273 * 65.00520 * 8 7 6 10 10 S 1.65599 * 119.99830 * 265.80587 * 6 5 2 11 11 O 1.42100 * 106.40400 * 23.26824 * 10 6 5 12 12 O 1.42110 * 106.39737 * 156.18649 * 10 6 5 13 13 C 1.76193 * 107.22036 * 269.72510 * 10 6 5 14 14 C 1.38641 * 119.75259 * 269.73100 * 13 10 6 15 15 C 1.37613 * 120.24848 * 179.71697 * 14 13 10 16 16 C 1.40717 * 119.74776 * 0.57359 * 15 14 13 17 17 C 1.41392 * 120.24888 * 179.67448 * 16 15 14 18 18 H 1.07997 * 120.00008 * 326.66809 * 17 16 15 19 19 C 1.39946 * 119.99712 * 146.65454 * 17 16 15 20 20 N 1.30820 * 120.00441 * 348.66522 * 19 17 16 21 21 Si 1.86803 * 119.99630 * 168.66338 * 19 17 16 22 22 H 1.48505 * 109.47274 * 0.02562 * 21 19 17 23 23 H 1.48496 * 109.47305 * 120.00369 * 21 19 17 24 24 H 1.48504 * 109.46941 * 240.00480 * 21 19 17 25 25 C 1.40720 * 119.50794 * 359.70326 * 16 15 14 26 26 C 1.37617 * 119.74407 * 359.97438 * 25 16 15 27 27 H 1.09000 * 109.47173 * 299.99766 * 1 2 3 28 28 H 1.08995 * 109.47109 * 60.00026 * 1 2 3 29 29 H 1.09001 * 109.47146 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47073 * 179.97438 * 3 2 1 31 31 H 1.08995 * 109.47026 * 300.00025 * 3 2 1 32 32 H 1.09000 * 109.46824 * 60.00021 * 3 2 1 33 33 H 1.09000 * 109.46817 * 310.63431 * 4 2 1 34 34 H 1.09002 * 109.47141 * 70.62812 * 4 2 1 35 35 H 1.08998 * 109.47541 * 190.63368 * 4 2 1 36 36 H 1.08996 * 109.46626 * 303.45781 * 5 2 1 37 37 H 1.08994 * 109.47454 * 183.45156 * 5 2 1 38 38 H 1.08996 * 109.47449 * 185.84647 * 7 6 5 39 39 H 1.09005 * 109.46611 * 305.84631 * 7 6 5 40 40 H 1.09003 * 109.47202 * 185.00106 * 8 7 6 41 41 H 1.09002 * 109.47667 * 305.00152 * 8 7 6 42 42 H 0.96703 * 114.00303 * 180.02562 * 9 8 7 43 43 H 1.08003 * 119.86879 * 359.97438 * 14 13 10 44 44 H 1.07998 * 120.12570 * 180.27536 * 15 14 13 45 45 H 0.96998 * 119.99724 * 179.97438 * 20 19 17 46 46 H 1.07997 * 120.12650 * 179.97438 * 25 16 15 47 47 H 1.08000 * 119.87166 * 180.02562 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 1.6207 -2.1244 1.2084 7 6 2.4330 -3.1111 0.4921 8 6 3.7828 -3.2674 1.1951 9 8 3.5805 -3.8185 2.4979 10 16 0.2252 -2.5940 1.9662 11 8 -0.5859 -1.4318 2.0696 12 8 -0.2019 -3.7847 1.3187 13 6 0.6539 -3.0497 3.6133 14 6 1.0007 -4.3619 3.8959 15 6 1.3430 -4.7278 5.1776 16 6 1.3283 -3.7669 6.2055 17 6 1.6714 -4.1327 7.5275 18 1 1.4301 -5.1193 7.8946 19 6 2.3238 -3.2164 8.3601 20 7 2.8134 -2.1113 7.8598 21 14 2.4953 -3.5713 10.1861 22 1 1.8619 -4.8778 10.4981 23 1 3.9348 -3.6207 10.5476 24 1 1.8261 -2.4979 10.9640 25 6 0.9690 -2.4392 5.9081 26 6 0.6368 -2.0945 4.6179 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.5302 -1.6795 -1.3490 34 1 1.8398 -0.1098 -2.1290 35 1 3.1134 -0.8885 -1.1595 36 1 1.6269 -0.2444 2.1381 37 1 3.1282 -0.6680 1.2808 38 1 1.9151 -4.0701 0.4826 39 1 2.5935 -2.7747 -0.5322 40 1 4.4203 -3.9336 0.6137 41 1 4.2616 -2.2921 1.2835 42 1 4.3957 -3.9451 3.0024 43 1 1.0064 -5.0988 3.1064 44 1 1.6172 -5.7496 5.3947 45 1 3.2653 -1.4760 8.4370 46 1 0.9539 -1.6937 6.6894 47 1 0.3612 -1.0760 4.3873 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645627291.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:32 Heat of formation + Delta-G solvation = -134.598806 kcal Electronic energy + Delta-G solvation = -29771.478596 eV Core-core repulsion = 25851.880810 eV Total energy + Delta-G solvation = -3919.597786 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.66642 -39.31309 -38.27695 -37.37307 -36.71134 -35.65456 -34.98213 -31.97134 -31.25058 -30.19881 -28.13003 -28.01183 -27.48744 -26.68474 -23.32142 -22.90763 -22.77098 -20.35512 -19.39379 -19.32676 -18.71362 -18.43948 -17.99129 -17.23922 -17.01819 -16.16674 -15.78490 -15.72776 -15.26191 -15.22080 -14.97944 -14.83856 -14.59667 -14.12910 -14.01598 -13.92578 -13.72512 -13.58295 -13.30362 -13.20490 -12.99308 -12.88211 -12.82114 -12.74968 -12.73098 -12.57598 -12.45412 -12.35709 -12.12740 -11.86000 -11.71750 -11.51418 -11.41722 -11.40984 -11.20943 -11.15917 -10.69198 -9.79289 -9.57539 -9.43210 -8.75148 -6.58060 -0.25724 0.56923 1.13137 1.37668 1.42376 1.52753 2.15886 2.22359 2.62297 2.99470 3.48530 3.56677 3.62610 3.86615 3.91942 4.05659 4.27466 4.32112 4.35342 4.38266 4.39012 4.59883 4.68014 4.69459 4.81667 4.85356 4.90060 4.90623 4.97887 5.00395 5.02592 5.13178 5.14154 5.16298 5.24173 5.30988 5.32639 5.42110 5.53305 5.61379 5.62356 5.65743 5.77340 5.89359 6.00196 6.25202 6.56407 6.77654 6.87452 7.05082 8.22439 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.016680 B = 0.003660 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.231026 B = 7647.429889 C = 7802.816797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.087 4.087 3 C -0.134 4.134 4 C -0.141 4.141 5 C 0.132 3.868 6 N -0.980 5.980 7 C 0.102 3.898 8 C 0.056 3.944 9 O -0.583 6.583 10 S 2.711 3.289 11 O -0.989 6.989 12 O -1.008 7.008 13 C -0.771 4.771 14 C 0.026 3.974 15 C -0.247 4.247 16 C 0.124 3.876 17 C -0.486 4.486 18 H 0.084 0.916 19 C 0.037 3.963 20 N -0.813 5.813 21 Si 0.988 3.012 22 H -0.257 1.257 23 H -0.262 1.262 24 H -0.264 1.264 25 C -0.194 4.194 26 C -0.022 4.022 27 H 0.053 0.947 28 H 0.063 0.937 29 H 0.023 0.977 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.049 0.951 33 H 0.051 0.949 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.098 0.902 38 H 0.078 0.922 39 H 0.125 0.875 40 H 0.075 0.925 41 H 0.059 0.941 42 H 0.385 0.615 43 H 0.110 0.890 44 H 0.105 0.895 45 H 0.293 0.707 46 H 0.101 0.899 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.390 4.534 -13.404 15.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.089 4.089 3 C -0.192 4.192 4 C -0.198 4.198 5 C 0.007 3.993 6 N -0.817 5.817 7 C -0.023 4.023 8 C -0.023 4.023 9 O -0.390 6.390 10 S 2.807 3.193 11 O -0.980 6.980 12 O -0.998 6.998 13 C -0.863 4.863 14 C 0.006 3.994 15 C -0.267 4.267 16 C 0.121 3.879 17 C -0.514 4.514 18 H 0.103 0.897 19 C -0.180 4.180 20 N -0.438 5.438 21 Si 0.808 3.192 22 H -0.181 1.181 23 H -0.187 1.187 24 H -0.189 1.189 25 C -0.215 4.215 26 C -0.041 4.041 27 H 0.072 0.928 28 H 0.082 0.918 29 H 0.042 0.958 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.070 0.930 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.117 0.883 38 H 0.097 0.903 39 H 0.142 0.858 40 H 0.093 0.907 41 H 0.077 0.923 42 H 0.233 0.767 43 H 0.128 0.872 44 H 0.123 0.877 45 H 0.104 0.896 46 H 0.119 0.881 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.079 4.748 -13.958 15.594 hybrid contribution 0.963 -0.324 1.852 2.113 sum 6.042 4.425 -12.106 14.235 Atomic orbital electron populations 1.21996 0.95430 1.00293 1.01792 1.21033 0.95227 0.96770 0.95893 1.21779 1.01694 0.93500 1.02248 1.22015 1.01615 0.99986 0.96174 1.21498 1.01507 0.78537 0.97799 1.57168 1.42714 1.14956 1.66820 1.21928 0.91493 0.91820 0.97022 1.22700 0.96730 0.98299 0.84546 1.86673 1.37211 1.86118 1.28963 1.00808 0.73344 0.71869 0.73233 1.93506 1.66817 1.49844 1.87798 1.93427 1.80999 1.49692 1.75716 1.29739 1.32897 1.02117 1.21550 1.20153 0.90199 0.93174 0.95853 1.21237 1.12849 0.99432 0.93229 1.18111 0.84645 0.91950 0.93219 1.20074 1.33603 1.00866 0.96901 0.89747 1.26824 0.92262 0.93318 1.05562 1.69841 1.25377 1.08977 1.39597 0.85071 0.79164 0.79762 0.75241 1.18085 1.18677 1.18881 1.21185 1.06902 0.97627 0.95765 1.20387 0.94119 0.96678 0.92966 0.92762 0.91817 0.95808 0.91040 0.91364 0.93156 0.93044 0.91611 0.90710 0.91899 0.88349 0.90339 0.85792 0.90686 0.92307 0.76682 0.87185 0.87713 0.89627 0.88141 0.87157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.74 6.84 71.98 0.49 -3.25 16 2 C -0.09 -1.87 0.85 -52.18 -0.04 -1.92 16 3 C -0.13 -2.28 8.45 71.98 0.61 -1.67 16 4 C -0.14 -2.36 6.90 71.98 0.50 -1.86 16 5 C 0.13 3.33 4.48 86.38 0.39 3.72 16 6 N -0.98 -28.95 2.32 -515.78 -1.19 -30.15 16 7 C 0.10 2.46 5.64 86.38 0.49 2.95 16 8 C 0.06 1.19 7.20 71.98 0.52 1.71 16 9 O -0.58 -17.29 12.41 -148.98 -1.85 -19.14 16 10 S 2.71 107.25 4.79 -56.49 -0.27 106.98 16 11 O -0.99 -41.39 12.56 -128.00 -1.61 -43.00 16 12 O -1.01 -43.75 15.77 -128.00 -2.02 -45.77 16 13 C -0.77 -35.24 6.00 22.46 0.13 -35.10 16 14 C 0.03 1.22 8.31 22.22 0.18 1.40 16 15 C -0.25 -12.28 9.80 22.73 0.22 -12.06 16 16 C 0.12 6.62 5.48 -21.29 -0.12 6.50 16 17 C -0.49 -25.26 9.04 23.46 0.21 -25.05 16 18 H 0.08 4.21 7.87 -2.91 -0.02 4.19 16 19 C 0.04 1.78 5.21 85.26 0.44 2.23 16 20 N -0.81 -40.48 11.20 21.83 0.24 -40.23 16 21 Si 0.99 36.21 29.57 68.60 2.03 38.24 16 22 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 23 H -0.26 -9.12 7.11 99.48 0.71 -8.42 16 24 H -0.26 -9.37 7.11 99.48 0.71 -8.66 16 25 C -0.19 -10.28 8.63 22.73 0.20 -10.08 16 26 C -0.02 -1.04 9.49 22.22 0.21 -0.83 16 27 H 0.05 1.67 7.31 -2.39 -0.02 1.65 16 28 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.02 0.73 5.76 -2.39 -0.01 0.72 16 30 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.05 0.97 6.29 -2.39 -0.02 0.95 16 34 H 0.06 0.94 8.11 -2.39 -0.02 0.92 16 35 H 0.07 0.96 7.73 -2.39 -0.02 0.94 16 36 H 0.06 1.84 7.63 -2.39 -0.02 1.83 16 37 H 0.10 2.00 6.67 -2.39 -0.02 1.98 16 38 H 0.08 2.21 6.84 -2.39 -0.02 2.20 16 39 H 0.12 2.13 4.84 -2.38 -0.01 2.12 16 40 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.06 1.08 6.74 -2.39 -0.02 1.06 16 42 H 0.39 9.23 9.12 -74.06 -0.68 8.55 16 43 H 0.11 4.82 7.59 -2.91 -0.02 4.80 16 44 H 0.10 4.87 8.06 -2.91 -0.02 4.85 16 45 H 0.29 13.02 8.30 -92.71 -0.77 12.26 16 46 H 0.10 5.46 6.61 -2.91 -0.02 5.45 16 47 H 0.11 4.96 7.60 -2.91 -0.02 4.93 16 Total: -1.00 -67.27 376.05 0.07 -67.20 By element: Atomic # 1 Polarization: 38.86 SS G_CDS: 0.31 Total: 39.17 kcal Atomic # 6 Polarization: -77.75 SS G_CDS: 4.44 Total: -73.31 kcal Atomic # 7 Polarization: -69.43 SS G_CDS: -0.95 Total: -70.38 kcal Atomic # 8 Polarization: -102.43 SS G_CDS: -5.48 Total: -107.90 kcal Atomic # 14 Polarization: 36.21 SS G_CDS: 2.03 Total: 38.24 kcal Atomic # 16 Polarization: 107.25 SS G_CDS: -0.27 Total: 106.98 kcal Total: -67.27 0.07 -67.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645627291.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.399 kcal (2) G-P(sol) polarization free energy of solvation -67.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.599 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds