Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46767 * 2 1 4 4 C 1.38544 * 120.01576 * 124.99843 * 3 2 1 5 5 C 1.40073 * 117.82242 * 180.02562 * 4 3 2 6 6 C 1.48130 * 121.15012 * 179.97438 * 5 4 3 7 7 O 1.21520 * 120.00057 * 183.62178 * 6 5 4 8 8 N 1.34776 * 120.00155 * 3.62539 * 6 5 4 9 9 C 1.46504 * 120.00387 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47060 * 179.97438 * 9 8 6 11 11 C 1.38320 * 119.96243 * 269.72186 * 10 9 8 12 12 C 1.38288 * 120.13524 * 179.76895 * 11 10 9 13 13 C 1.38129 * 120.06733 * 0.50851 * 12 11 10 14 14 C 1.38862 * 119.92896 * 359.74840 * 13 12 11 15 15 O 1.35747 * 120.06425 * 179.97438 * 14 13 12 16 16 C 1.34830 * 117.00439 * 5.92743 * 15 14 13 17 17 H 1.08002 * 119.99516 * 354.89816 * 16 15 14 18 18 C 1.38655 * 120.00041 * 174.89060 * 16 15 14 19 19 N 1.31556 * 119.99828 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47381 * 89.99581 * 20 18 16 22 22 H 1.48505 * 109.46752 * 209.99416 * 20 18 16 23 23 H 1.48497 * 109.47280 * 329.99391 * 20 18 16 24 24 C 1.38081 * 119.96614 * 90.00086 * 10 9 8 25 25 C 1.39766 * 117.70501 * 0.02562 * 5 4 3 26 26 C 1.50702 * 120.17340 * 180.02562 * 25 5 4 27 27 N 1.31898 * 119.65527 * 0.26935 * 25 5 4 28 28 N 1.28279 * 122.32843 * 359.42820 * 27 25 5 29 29 H 1.08993 * 109.47499 * 299.99494 * 1 2 3 30 30 H 1.08997 * 109.47246 * 60.00282 * 1 2 3 31 31 H 1.09007 * 109.46587 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47138 * 240.00793 * 2 1 3 33 33 H 1.08997 * 109.47246 * 119.99718 * 2 1 3 34 34 H 1.08005 * 121.08968 * 0.02562 * 4 3 2 35 35 H 0.96998 * 119.99783 * 0.02562 * 8 6 5 36 36 H 1.09004 * 109.46863 * 300.00169 * 9 8 6 37 37 H 1.09005 * 109.46858 * 59.99781 * 9 8 6 38 38 H 1.07992 * 119.93682 * 0.02562 * 11 10 9 39 39 H 1.07998 * 119.96614 * 180.25970 * 12 11 10 40 40 H 1.07991 * 120.03552 * 179.76446 * 13 12 11 41 41 H 0.96999 * 119.99758 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.03188 * 359.95654 * 24 10 9 43 43 H 1.09001 * 109.47326 * 83.18899 * 26 25 5 44 44 H 1.09005 * 109.46778 * 203.18395 * 26 25 5 45 45 H 1.08997 * 109.47178 * 323.18396 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9120 1.8450 0.9827 5 6 3.3490 3.1750 0.9391 6 6 4.2891 3.7063 1.9531 7 8 4.6034 4.8800 1.9344 8 7 4.7959 2.8880 2.8965 9 6 5.7261 3.4133 3.8991 10 6 6.1406 2.3032 4.8301 11 6 5.4116 2.0573 5.9797 12 6 5.7860 1.0365 6.8341 13 6 6.8958 0.2658 6.5472 14 6 7.6326 0.5136 5.3966 15 8 8.7241 -0.2418 5.1121 16 6 8.9682 -1.2934 5.9199 17 1 8.3577 -1.4543 6.7962 18 6 10.0030 -2.1681 5.6257 19 7 10.2410 -3.1943 6.4137 20 14 11.0593 -1.8893 4.1104 21 1 12.2176 -1.0306 4.4655 22 1 11.5491 -3.1955 3.6013 23 1 10.2509 -1.2202 3.0597 24 6 7.2509 1.5362 4.5377 25 6 2.8667 3.9840 -0.0936 26 6 3.3010 5.4236 -0.1939 27 7 2.0257 3.4822 -0.9771 28 7 1.6335 2.2616 -0.9346 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2497 1.1721 1.7571 35 1 4.5453 1.9510 2.9112 36 1 6.6070 3.8180 3.4007 37 1 5.2370 4.2025 4.4702 38 1 4.5460 2.6611 6.2084 39 1 5.2124 0.8443 7.7288 40 1 7.1898 -0.5288 7.2167 41 1 10.9651 -3.8060 6.2080 42 1 7.8219 1.7312 3.6419 43 1 4.2624 5.4784 -0.7046 44 1 2.5580 5.9889 -0.7566 45 1 3.3966 5.8448 0.8069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645676204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = 13.660839 kcal Electronic energy + Delta-G solvation = -28071.138972 eV Core-core repulsion = 24054.819006 eV Total energy + Delta-G solvation = -4016.319966 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.71600 -39.88912 -39.25456 -37.15449 -35.68715 -34.85812 -33.90346 -32.53363 -32.01935 -30.88176 -29.54621 -28.18216 -26.75245 -25.65883 -25.09029 -23.80586 -22.72610 -21.95336 -20.91277 -20.83950 -18.39616 -17.94609 -17.79750 -17.06856 -16.11712 -16.04233 -15.91364 -15.51617 -15.26306 -15.21207 -14.79068 -14.41764 -14.27647 -14.13880 -13.91816 -13.67934 -13.48518 -13.22658 -12.88266 -12.70057 -12.65953 -12.44038 -12.31000 -12.19496 -12.15957 -11.62016 -11.55748 -11.15388 -11.06135 -10.97626 -10.86536 -10.61116 -10.59073 -10.28706 -9.85163 -9.71446 -9.56020 -9.31980 -9.01533 -8.47059 -7.59898 -6.54596 -4.22448 -0.03143 0.49173 1.64399 2.02787 2.44470 2.87384 3.13779 3.16888 3.23330 3.29886 3.55002 3.84989 4.00577 4.11990 4.20348 4.30411 4.38439 4.53355 4.65210 4.73070 4.87296 4.93193 4.97968 5.10441 5.16129 5.26354 5.30240 5.45368 5.48859 5.51268 5.59743 5.60984 5.65430 5.65534 5.78719 5.89359 5.93075 5.99374 6.02938 6.20494 6.29304 6.55000 6.86642 6.97744 7.08956 7.14348 7.38728 7.63370 7.79978 7.88377 8.34011 8.79881 9.39779 10.52630 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.002496 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.728918 B =11216.198412 C =11950.856091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.070 4.070 3 C 0.060 3.940 4 C -0.078 4.078 5 C -0.130 4.130 6 C 0.561 3.439 7 O -0.521 6.521 8 N -0.710 5.710 9 C 0.168 3.832 10 C -0.079 4.079 11 C -0.186 4.186 12 C -0.077 4.077 13 C -0.211 4.211 14 C 0.156 3.844 15 O -0.214 6.214 16 C -0.393 4.393 17 H 0.107 0.893 18 C 0.065 3.935 19 N -0.876 5.876 20 Si 0.905 3.095 21 H -0.272 1.272 22 H -0.281 1.281 23 H -0.260 1.260 24 C -0.171 4.171 25 C 0.118 3.882 26 C -0.111 4.111 27 N -0.243 5.243 28 N -0.220 5.220 29 H 0.053 0.947 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.155 0.845 35 H 0.403 0.597 36 H 0.079 0.921 37 H 0.079 0.921 38 H 0.110 0.890 39 H 0.113 0.887 40 H 0.135 0.865 41 H 0.281 0.719 42 H 0.118 0.882 43 H 0.086 0.914 44 H 0.075 0.925 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.867 9.183 -9.042 20.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.109 4.109 3 C -0.084 4.084 4 C -0.108 4.108 5 C -0.144 4.144 6 C 0.347 3.653 7 O -0.398 6.398 8 N -0.361 5.361 9 C 0.046 3.954 10 C -0.080 4.080 11 C -0.206 4.206 12 C -0.095 4.095 13 C -0.230 4.230 14 C 0.104 3.896 15 O -0.119 6.119 16 C -0.468 4.468 17 H 0.125 0.875 18 C -0.139 4.139 19 N -0.513 5.513 20 Si 0.731 3.269 21 H -0.198 1.198 22 H -0.207 1.207 23 H -0.184 1.184 24 C -0.191 4.191 25 C -0.026 4.026 26 C -0.169 4.169 27 N -0.085 5.085 28 N -0.062 5.062 29 H 0.072 0.928 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.105 0.895 34 H 0.173 0.827 35 H 0.239 0.761 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.152 0.848 41 H 0.091 0.909 42 H 0.136 0.864 43 H 0.104 0.896 44 H 0.094 0.906 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -16.213 10.105 -10.523 21.810 hybrid contribution 1.358 -1.006 0.993 1.961 sum -14.855 9.099 -9.530 19.856 Atomic orbital electron populations 1.21712 0.93550 1.02360 1.02819 1.20497 0.97445 0.88750 1.04190 1.22876 0.94599 0.98839 0.92077 1.22623 0.94566 0.95028 0.98585 1.21105 1.00258 0.94913 0.98143 1.17869 0.80586 0.86048 0.80846 1.90728 1.59708 1.15751 1.73635 1.46076 1.46684 1.13240 1.30080 1.20251 0.92683 0.94402 0.88067 1.19218 0.96116 0.96800 0.95868 1.20551 1.01960 1.01478 0.96601 1.20819 0.95874 0.94531 0.98261 1.21389 0.98237 1.03910 0.99470 1.19054 0.86667 0.91165 0.92723 1.83574 1.37803 1.38007 1.52502 1.20763 1.17795 1.01468 1.06756 0.87549 1.24474 0.96849 0.93978 0.98564 1.69639 1.30771 1.13417 1.37453 0.86183 0.80436 0.77841 0.82472 1.19769 1.20690 1.18380 1.20085 0.99550 0.98524 1.00916 1.23155 0.91387 0.98763 0.89337 1.21070 1.01777 0.87964 1.06080 1.73096 1.09170 1.05419 1.20807 1.72755 1.17120 0.97450 1.18925 0.92750 0.91405 0.91685 0.89134 0.89517 0.82697 0.76121 0.90300 0.90291 0.87238 0.86889 0.84761 0.90877 0.86352 0.89580 0.90593 0.87050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.77 37.16 0.36 -0.61 16 2 C -0.07 -0.48 6.35 -27.88 -0.18 -0.66 16 3 C 0.06 0.58 6.25 -82.45 -0.52 0.07 16 4 C -0.08 -0.70 9.30 -38.78 -0.36 -1.06 16 5 C -0.13 -1.40 5.92 -104.58 -0.62 -2.02 16 6 C 0.56 6.52 7.77 -12.20 -0.09 6.43 16 7 O -0.52 -7.14 13.41 5.35 0.07 -7.06 16 8 N -0.71 -7.57 5.51 -62.33 -0.34 -7.91 16 9 C 0.17 2.00 5.80 -5.19 -0.03 1.97 16 10 C -0.08 -1.13 5.25 -104.65 -0.55 -1.68 16 11 C -0.19 -2.62 9.70 -39.53 -0.38 -3.01 16 12 C -0.08 -1.20 10.04 -39.60 -0.40 -1.60 16 13 C -0.21 -4.07 9.17 -39.39 -0.36 -4.43 16 14 C 0.16 3.26 6.65 -39.11 -0.26 3.00 16 15 O -0.21 -5.26 8.59 0.06 0.00 -5.26 16 16 C -0.39 -10.43 9.95 30.89 0.31 -10.12 16 17 H 0.11 2.88 5.44 -52.49 -0.29 2.59 16 18 C 0.07 1.75 5.49 -17.52 -0.10 1.65 16 19 N -0.88 -24.26 13.96 55.48 0.77 -23.49 16 20 Si 0.91 20.72 28.62 -169.99 -4.86 15.85 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.75 16 22 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 23 H -0.26 -5.94 7.11 56.52 0.40 -5.54 16 24 C -0.17 -2.96 9.65 -39.40 -0.38 -3.34 16 25 C 0.12 1.37 6.91 -81.99 -0.57 0.81 16 26 C -0.11 -1.12 9.12 36.01 0.33 -0.79 16 27 N -0.24 -3.10 11.42 33.81 0.39 -2.71 16 28 N -0.22 -2.65 11.03 33.58 0.37 -2.28 16 29 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.07 0.52 7.96 -51.93 -0.41 0.11 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.09 0.44 7.92 -51.93 -0.41 0.03 16 34 H 0.16 0.96 6.57 -52.48 -0.34 0.61 16 35 H 0.40 3.69 6.66 -40.82 -0.27 3.42 16 36 H 0.08 0.97 8.09 -51.93 -0.42 0.55 16 37 H 0.08 0.90 8.08 -51.93 -0.42 0.48 16 38 H 0.11 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 40 H 0.13 2.77 5.64 -52.49 -0.30 2.47 16 41 H 0.28 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.12 1.96 8.06 -52.49 -0.42 1.54 16 43 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 44 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.11 1.20 5.69 -51.93 -0.30 0.91 16 LS Contribution 382.18 15.07 5.76 5.76 Total: -1.00 -30.14 382.18 -7.31 -37.45 By element: Atomic # 1 Polarization: 10.73 SS G_CDS: -5.68 Total: 5.05 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: -3.79 Total: -15.40 kcal Atomic # 7 Polarization: -37.59 SS G_CDS: 1.19 Total: -36.40 kcal Atomic # 8 Polarization: -12.40 SS G_CDS: 0.07 Total: -12.32 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.86 Total: 15.85 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.14 -7.31 -37.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645676204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.112 kcal (2) G-P(sol) polarization free energy of solvation -30.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds