Wall clock time and date at job start Sat Apr 11 2020 06:19:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50701 * 109.46767 * 2 1 4 4 C 1.38544 * 120.01576 * 124.99843 * 3 2 1 5 5 C 1.40073 * 117.82242 * 180.02562 * 4 3 2 6 6 C 1.48130 * 121.15012 * 179.97438 * 5 4 3 7 7 O 1.21520 * 120.00057 * 183.62178 * 6 5 4 8 8 N 1.34776 * 120.00155 * 3.62539 * 6 5 4 9 9 C 1.46504 * 120.00387 * 179.97438 * 8 6 5 10 10 C 1.50698 * 109.47060 * 179.97438 * 9 8 6 11 11 C 1.38320 * 119.96243 * 269.72186 * 10 9 8 12 12 C 1.38288 * 120.13524 * 179.76895 * 11 10 9 13 13 C 1.38129 * 120.06733 * 0.50851 * 12 11 10 14 14 C 1.38862 * 119.92896 * 359.74840 * 13 12 11 15 15 O 1.35747 * 120.06425 * 179.97438 * 14 13 12 16 16 C 1.34830 * 117.00439 * 5.92743 * 15 14 13 17 17 H 1.08002 * 119.99516 * 354.89816 * 16 15 14 18 18 C 1.38655 * 120.00041 * 174.89060 * 16 15 14 19 19 N 1.31556 * 119.99828 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99907 * 0.02562 * 18 16 15 21 21 H 1.48497 * 109.47381 * 89.99581 * 20 18 16 22 22 H 1.48505 * 109.46752 * 209.99416 * 20 18 16 23 23 H 1.48497 * 109.47280 * 329.99391 * 20 18 16 24 24 C 1.38081 * 119.96614 * 90.00086 * 10 9 8 25 25 C 1.39766 * 117.70501 * 0.02562 * 5 4 3 26 26 C 1.50702 * 120.17340 * 180.02562 * 25 5 4 27 27 N 1.31898 * 119.65527 * 0.26935 * 25 5 4 28 28 N 1.28279 * 122.32843 * 359.42820 * 27 25 5 29 29 H 1.08993 * 109.47499 * 299.99494 * 1 2 3 30 30 H 1.08997 * 109.47246 * 60.00282 * 1 2 3 31 31 H 1.09007 * 109.46587 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47138 * 240.00793 * 2 1 3 33 33 H 1.08997 * 109.47246 * 119.99718 * 2 1 3 34 34 H 1.08005 * 121.08968 * 0.02562 * 4 3 2 35 35 H 0.96998 * 119.99783 * 0.02562 * 8 6 5 36 36 H 1.09004 * 109.46863 * 300.00169 * 9 8 6 37 37 H 1.09005 * 109.46858 * 59.99781 * 9 8 6 38 38 H 1.07992 * 119.93682 * 0.02562 * 11 10 9 39 39 H 1.07998 * 119.96614 * 180.25970 * 12 11 10 40 40 H 1.07991 * 120.03552 * 179.76446 * 13 12 11 41 41 H 0.96999 * 119.99758 * 180.02562 * 19 18 16 42 42 H 1.08000 * 120.03188 * 359.95654 * 24 10 9 43 43 H 1.09001 * 109.47326 * 83.18899 * 26 25 5 44 44 H 1.09005 * 109.46778 * 203.18395 * 26 25 5 45 45 H 1.08997 * 109.47178 * 323.18396 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.9120 1.8450 0.9827 5 6 3.3490 3.1750 0.9391 6 6 4.2891 3.7063 1.9531 7 8 4.6034 4.8800 1.9344 8 7 4.7959 2.8880 2.8965 9 6 5.7261 3.4133 3.8991 10 6 6.1406 2.3032 4.8301 11 6 5.4116 2.0573 5.9797 12 6 5.7860 1.0365 6.8341 13 6 6.8958 0.2658 6.5472 14 6 7.6326 0.5136 5.3966 15 8 8.7241 -0.2418 5.1121 16 6 8.9682 -1.2934 5.9199 17 1 8.3577 -1.4543 6.7962 18 6 10.0030 -2.1681 5.6257 19 7 10.2410 -3.1943 6.4137 20 14 11.0593 -1.8893 4.1104 21 1 12.2176 -1.0306 4.4655 22 1 11.5491 -3.1955 3.6013 23 1 10.2509 -1.2202 3.0597 24 6 7.2509 1.5362 4.5377 25 6 2.8667 3.9840 -0.0936 26 6 3.3010 5.4236 -0.1939 27 7 2.0257 3.4822 -0.9771 28 7 1.6335 2.2616 -0.9346 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0278 -0.0005 32 1 1.8933 -0.5137 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.2497 1.1721 1.7571 35 1 4.5453 1.9510 2.9112 36 1 6.6070 3.8180 3.4007 37 1 5.2370 4.2025 4.4702 38 1 4.5460 2.6611 6.2084 39 1 5.2124 0.8443 7.7288 40 1 7.1898 -0.5288 7.2167 41 1 10.9651 -3.8060 6.2080 42 1 7.8219 1.7312 3.6419 43 1 4.2624 5.4784 -0.7046 44 1 2.5580 5.9889 -0.7566 45 1 3.3966 5.8448 0.8069 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001645676204.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:36 Heat of formation + Delta-G solvation = -4.882494 kcal Electronic energy + Delta-G solvation = -28071.943071 eV Core-core repulsion = 24054.819006 eV Total energy + Delta-G solvation = -4017.124065 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -42.53071 -41.07884 -40.50445 -38.60759 -36.47346 -35.81298 -34.75058 -34.45061 -32.83218 -31.98207 -30.97928 -28.97467 -27.78784 -27.19823 -26.28506 -24.48857 -23.57708 -23.25845 -22.28125 -21.74687 -19.78604 -19.31968 -18.75657 -18.41590 -17.01622 -16.90768 -16.81448 -16.80344 -16.58145 -16.11275 -15.90083 -15.71074 -15.59962 -15.16938 -15.00318 -14.79874 -14.47185 -14.37766 -14.19853 -13.92223 -13.84672 -13.47622 -13.35771 -13.17936 -13.06833 -12.74685 -12.61743 -12.44768 -12.37690 -12.17449 -11.94513 -11.84647 -11.47200 -11.39941 -11.32012 -10.92716 -10.65707 -10.55282 -10.22416 -9.79876 -9.12603 -8.50379 -6.23116 -0.83688 -0.27472 0.32336 0.64811 1.32334 1.35195 1.50663 1.57229 1.91947 2.26760 2.41670 2.76097 2.81141 3.00220 3.08915 3.13723 3.26143 3.52489 3.60233 3.77366 3.97957 4.06440 4.08636 4.27123 4.35486 4.40480 4.41607 4.49060 4.54978 4.62094 4.65290 4.68383 4.71672 4.91222 4.92544 5.02299 5.05687 5.13141 5.17444 5.18813 5.35874 5.38301 5.40820 5.62157 5.68992 5.75117 5.89157 6.18667 6.28901 6.84362 6.92979 7.53028 7.58295 8.61003 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011194 B = 0.002496 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.728918 B =11216.198412 C =11950.856091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.070 4.070 3 C 0.059 3.941 4 C -0.066 4.066 5 C -0.139 4.139 6 C 0.567 3.433 7 O -0.543 6.543 8 N -0.702 5.702 9 C 0.174 3.826 10 C -0.063 4.063 11 C -0.156 4.156 12 C -0.074 4.074 13 C -0.227 4.227 14 C 0.119 3.881 15 O -0.245 6.245 16 C -0.397 4.397 17 H 0.084 0.916 18 C 0.012 3.988 19 N -0.923 5.923 20 Si 0.967 3.033 21 H -0.269 1.269 22 H -0.270 1.270 23 H -0.261 1.261 24 C -0.168 4.168 25 C 0.107 3.893 26 C -0.106 4.106 27 N -0.269 5.269 28 N -0.245 5.245 29 H 0.051 0.949 30 H 0.051 0.949 31 H 0.081 0.919 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.187 0.813 35 H 0.412 0.588 36 H 0.077 0.923 37 H 0.096 0.904 38 H 0.151 0.849 39 H 0.143 0.857 40 H 0.109 0.891 41 H 0.284 0.716 42 H 0.124 0.876 43 H 0.087 0.913 44 H 0.083 0.917 45 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.620 10.479 -9.427 22.564 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 C -0.086 4.086 4 C -0.095 4.095 5 C -0.153 4.153 6 C 0.353 3.647 7 O -0.422 6.422 8 N -0.353 5.353 9 C 0.052 3.948 10 C -0.064 4.064 11 C -0.175 4.175 12 C -0.092 4.092 13 C -0.247 4.247 14 C 0.070 3.930 15 O -0.153 6.153 16 C -0.473 4.473 17 H 0.102 0.898 18 C -0.187 4.187 19 N -0.563 5.563 20 Si 0.790 3.210 21 H -0.194 1.194 22 H -0.195 1.195 23 H -0.185 1.185 24 C -0.188 4.188 25 C -0.038 4.038 26 C -0.164 4.164 27 N -0.111 5.111 28 N -0.087 5.087 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.114 0.886 33 H 0.129 0.871 34 H 0.204 0.796 35 H 0.250 0.750 36 H 0.096 0.904 37 H 0.114 0.886 38 H 0.169 0.831 39 H 0.161 0.839 40 H 0.126 0.874 41 H 0.094 0.906 42 H 0.142 0.858 43 H 0.106 0.894 44 H 0.102 0.898 45 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.016 11.427 -10.916 23.965 hybrid contribution 1.580 -1.192 1.170 2.299 sum -16.436 10.235 -9.746 21.677 Atomic orbital electron populations 1.21695 0.93513 1.03146 1.01912 1.20655 0.97426 0.87151 1.05655 1.23350 0.94179 0.99655 0.91401 1.22973 0.93282 0.94597 0.98669 1.21063 1.00587 0.95703 0.97973 1.17875 0.80350 0.85696 0.80782 1.90730 1.60511 1.16763 1.74149 1.45900 1.46202 1.13641 1.29589 1.20182 0.93185 0.93508 0.87971 1.19428 0.94491 0.96184 0.96251 1.21052 1.01839 0.99762 0.94866 1.21146 0.94509 0.93967 0.99575 1.21414 0.99862 1.04364 0.99017 1.19585 0.86911 0.92166 0.94335 1.83518 1.40368 1.38532 1.52867 1.20693 1.17625 1.02436 1.06527 0.89846 1.25230 0.98190 0.93885 1.01378 1.69722 1.32237 1.14868 1.39520 0.85265 0.78681 0.78062 0.79036 1.19373 1.19477 1.18518 1.20296 1.00383 0.97618 1.00472 1.23361 0.91432 0.99431 0.89611 1.21028 1.02061 0.87510 1.05780 1.73048 1.10146 1.06103 1.21767 1.72684 1.18033 0.97655 1.20281 0.93001 0.92984 0.90048 0.88594 0.87059 0.79551 0.75037 0.90430 0.88611 0.83129 0.83940 0.87352 0.90610 0.85834 0.89441 0.89817 0.87665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 9.77 71.98 0.70 -0.93 16 2 C -0.07 -0.77 6.35 29.85 0.19 -0.58 16 3 C 0.06 1.01 6.25 42.62 0.27 1.28 16 4 C -0.07 -0.98 9.30 22.79 0.21 -0.76 16 5 C -0.14 -2.68 5.92 -19.84 -0.12 -2.80 16 6 C 0.57 11.49 7.77 86.87 0.68 12.17 16 7 O -0.54 -13.57 13.41 -3.78 -0.05 -13.62 16 8 N -0.70 -12.09 5.51 -469.41 -2.59 -14.68 16 9 C 0.17 3.38 5.80 85.63 0.50 3.87 16 10 C -0.06 -1.53 5.25 -19.88 -0.10 -1.64 16 11 C -0.16 -3.59 9.70 22.30 0.22 -3.37 16 12 C -0.07 -2.09 10.04 22.26 0.22 -1.86 16 13 C -0.23 -8.77 9.17 22.39 0.21 -8.56 16 14 C 0.12 4.97 6.65 22.58 0.15 5.12 16 15 O -0.25 -12.40 8.59 -22.71 -0.19 -12.60 16 16 C -0.40 -22.09 9.95 67.92 0.68 -21.42 16 17 H 0.08 4.85 5.44 -2.91 -0.02 4.84 16 18 C 0.01 0.65 5.49 84.83 0.47 1.12 16 19 N -0.92 -53.30 13.96 21.61 0.30 -53.00 16 20 Si 0.97 43.67 28.62 68.60 1.96 45.63 16 21 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 22 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 23 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 24 C -0.17 -5.49 9.65 22.39 0.22 -5.27 16 25 C 0.11 2.37 6.91 42.92 0.30 2.67 16 26 C -0.11 -2.04 9.12 71.24 0.65 -1.39 16 27 N -0.27 -6.73 11.42 -46.94 -0.54 -7.26 16 28 N -0.24 -5.68 11.03 -47.69 -0.53 -6.20 16 29 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.05 0.75 7.96 -2.39 -0.02 0.73 16 31 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 32 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.11 0.68 7.92 -2.39 -0.02 0.66 16 34 H 0.19 1.44 6.57 -2.91 -0.02 1.42 16 35 H 0.41 5.64 6.66 -92.71 -0.62 5.02 16 36 H 0.08 1.61 8.09 -2.38 -0.02 1.59 16 37 H 0.10 1.65 8.08 -2.38 -0.02 1.63 16 38 H 0.15 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.11 4.73 5.64 -2.92 -0.02 4.71 16 41 H 0.28 15.11 8.31 -92.71 -0.77 14.34 16 42 H 0.12 3.88 8.06 -2.91 -0.02 3.86 16 43 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.08 1.42 8.14 -2.38 -0.02 1.40 16 45 H 0.11 2.17 5.69 -2.39 -0.01 2.16 16 Total: -1.00 -69.41 382.18 4.21 -65.20 By element: Atomic # 1 Polarization: 18.48 SS G_CDS: 0.42 Total: 18.91 kcal Atomic # 6 Polarization: -27.79 SS G_CDS: 5.42 Total: -22.37 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -3.35 Total: -81.14 kcal Atomic # 8 Polarization: -25.97 SS G_CDS: -0.25 Total: -26.22 kcal Atomic # 14 Polarization: 43.67 SS G_CDS: 1.96 Total: 45.63 kcal Total: -69.41 4.21 -65.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645676204.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.313 kcal (2) G-P(sol) polarization free energy of solvation -69.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds