Wall clock time and date at job start Sat Apr 11 2020 06:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52991 * 109.47616 * 2 1 4 4 N 1.46503 * 109.47210 * 120.00569 * 2 1 3 5 5 C 1.34783 * 119.99585 * 299.99559 * 4 2 1 6 6 O 1.21284 * 119.99976 * 0.02562 * 5 4 2 7 7 C 1.50699 * 120.00059 * 179.97438 * 5 4 2 8 8 C 1.50699 * 109.47151 * 180.02562 * 7 5 4 9 9 C 1.38328 * 119.96224 * 270.02423 * 8 7 5 10 10 C 1.38281 * 120.13505 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.06679 * 359.68445 * 10 9 8 12 12 C 1.38852 * 119.93490 * 0.58817 * 11 10 9 13 13 O 1.35752 * 120.07221 * 179.70368 * 12 11 10 14 14 C 1.34829 * 116.99954 * 354.17311 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38656 * 119.99670 * 185.03445 * 14 13 12 17 17 N 1.31550 * 120.00275 * 0.02562 * 16 14 13 18 18 Si 1.86802 * 119.99668 * 179.97438 * 16 14 13 19 19 H 1.48497 * 109.47063 * 60.00398 * 18 16 14 20 20 H 1.48498 * 109.47240 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47319 * 300.00306 * 18 16 14 22 22 C 1.38073 * 119.96539 * 89.99818 * 8 7 5 23 23 C 1.50708 * 109.46970 * 240.00031 * 2 1 3 24 24 N 1.31802 * 119.12192 * 239.72907 * 23 2 1 25 25 C 1.32332 * 120.81803 * 179.76142 * 24 23 2 26 26 C 1.38602 * 119.10148 * 0.50510 * 25 24 23 27 27 C 1.38599 * 118.39878 * 359.75377 * 26 25 24 28 28 N 1.31794 * 119.12262 * 60.00626 * 23 2 1 29 29 H 1.08995 * 109.47243 * 299.99960 * 1 2 3 30 30 H 1.09008 * 109.46638 * 59.99930 * 1 2 3 31 31 H 1.08998 * 109.47174 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47661 * 179.97438 * 3 2 1 33 33 H 1.09002 * 109.47340 * 300.00448 * 3 2 1 34 34 H 1.09004 * 109.46985 * 59.99944 * 3 2 1 35 35 H 0.97001 * 120.00603 * 119.99990 * 4 2 1 36 36 H 1.09004 * 109.46756 * 60.00007 * 7 5 4 37 37 H 1.08998 * 109.46908 * 300.00650 * 7 5 4 38 38 H 1.08001 * 119.93314 * 359.97438 * 9 8 7 39 39 H 1.07993 * 119.96315 * 179.97438 * 10 9 8 40 40 H 1.08001 * 120.03256 * 180.31909 * 11 10 9 41 41 H 0.96999 * 119.99936 * 179.97438 * 17 16 14 42 42 H 1.07996 * 120.03547 * 0.04988 * 22 8 7 43 43 H 1.07994 * 120.44958 * 180.24035 * 25 24 23 44 44 H 1.07997 * 120.79707 * 179.76981 * 26 25 24 45 45 H 1.07999 * 120.44380 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6928 -0.2303 2.4203 6 8 0.9952 0.7556 2.5316 7 6 2.1946 -0.9410 3.6507 8 6 1.6919 -0.2309 4.8812 9 6 2.4397 0.7868 5.4455 10 6 1.9816 1.4411 6.5743 11 6 0.7721 1.0845 7.1379 12 6 0.0218 0.0596 6.5771 13 8 -1.1645 -0.2973 7.1323 14 6 -1.5003 0.2985 8.2943 15 1 -0.8768 1.0817 8.6995 16 6 -2.6462 -0.0945 8.9689 17 7 -3.4054 -1.0488 8.4756 18 14 -3.1111 0.7304 10.5792 19 1 -3.3097 2.1843 10.3513 20 1 -4.3688 0.1336 11.0961 21 1 -2.0240 0.5287 11.5706 22 6 0.4851 -0.5964 5.4437 23 6 2.0323 -0.7104 -1.2305 24 7 2.7933 -1.7773 -1.0895 25 6 3.2490 -2.4296 -2.1469 26 6 2.9243 -1.9704 -3.4137 27 6 2.1262 -0.8424 -3.5215 28 7 1.7034 -0.2452 -2.4190 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8899 34 1 1.6768 1.9562 0.8900 35 1 2.5760 -1.4794 1.1071 36 1 3.2846 -0.9415 3.6508 37 1 1.8309 -1.9685 3.6505 38 1 3.3834 1.0709 5.0036 39 1 2.5679 2.2350 7.0128 40 1 0.4124 1.5994 8.0164 41 1 -4.2068 -1.3239 8.9477 42 1 -0.0981 -1.3913 5.0029 43 1 3.8689 -3.3053 -2.0245 44 1 3.2844 -2.4795 -4.2955 45 1 1.8527 -0.4563 -4.4924 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647391982.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:47 Heat of formation + Delta-G solvation = -5.459468 kcal Electronic energy + Delta-G solvation = -28458.704691 eV Core-core repulsion = 24441.555606 eV Total energy + Delta-G solvation = -4017.149085 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.31551 -41.13253 -40.45755 -38.34210 -37.10904 -34.84116 -34.33311 -33.78452 -32.93692 -31.76248 -30.80613 -28.37957 -28.36319 -27.22128 -25.88994 -25.34115 -23.38777 -23.06046 -22.00269 -20.69990 -19.58855 -19.06656 -18.58475 -18.42353 -17.37951 -16.79635 -16.63208 -16.52552 -16.13977 -16.09727 -15.94902 -15.78267 -15.49760 -15.00720 -14.94713 -14.71027 -14.42012 -14.33699 -14.22844 -13.95835 -13.59919 -13.29101 -13.16079 -12.97861 -12.83407 -12.70934 -12.42158 -12.37425 -12.36030 -12.18818 -12.10992 -11.88104 -11.77678 -11.18450 -10.79822 -10.67185 -10.59976 -10.26227 -10.05603 -9.60607 -8.95073 -8.45405 -6.13859 -0.13020 0.14776 0.54761 0.78820 1.34288 1.45881 1.51084 1.71027 2.05902 2.19041 2.63619 2.73403 2.86055 3.18811 3.36794 3.47292 3.73986 3.78016 3.86764 4.00185 4.07476 4.13018 4.15915 4.21656 4.34625 4.42948 4.46357 4.59829 4.66368 4.66668 4.67165 4.75904 4.76527 4.77391 4.89604 5.09719 5.14780 5.16227 5.20534 5.33707 5.41977 5.51239 5.67945 5.75542 5.78750 6.02994 6.04559 6.26336 6.65099 6.98967 7.03141 7.35755 7.81364 8.78050 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.022530 B = 0.002094 C = 0.002029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1242.462504 B =13370.736053 C =13796.385651 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.246 3.754 3 C -0.146 4.146 4 N -0.709 5.709 5 C 0.519 3.481 6 O -0.561 6.561 7 C -0.091 4.091 8 C -0.022 4.022 9 C -0.178 4.178 10 C -0.073 4.073 11 C -0.246 4.246 12 C 0.111 3.889 13 O -0.235 6.235 14 C -0.414 4.414 15 H 0.100 0.900 16 C -0.026 4.026 17 N -0.923 5.923 18 Si 1.020 2.980 19 H -0.259 1.259 20 H -0.271 1.271 21 H -0.256 1.256 22 C -0.191 4.191 23 C 0.305 3.695 24 N -0.537 5.537 25 C 0.142 3.858 26 C -0.214 4.214 27 C 0.139 3.861 28 N -0.532 5.532 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.420 0.580 36 H 0.141 0.859 37 H 0.118 0.882 38 H 0.147 0.853 39 H 0.145 0.855 40 H 0.117 0.883 41 H 0.272 0.728 42 H 0.104 0.896 43 H 0.204 0.796 44 H 0.189 0.811 45 H 0.200 0.800 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.781 -2.607 -25.169 31.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.157 3.843 3 C -0.205 4.205 4 N -0.365 5.365 5 C 0.306 3.694 6 O -0.439 6.439 7 C -0.130 4.130 8 C -0.023 4.023 9 C -0.197 4.197 10 C -0.091 4.091 11 C -0.266 4.266 12 C 0.062 3.938 13 O -0.142 6.142 14 C -0.490 4.490 15 H 0.117 0.883 16 C -0.223 4.223 17 N -0.561 5.561 18 Si 0.839 3.161 19 H -0.183 1.183 20 H -0.195 1.195 21 H -0.180 1.180 22 C -0.210 4.210 23 C 0.037 3.963 24 N -0.252 5.252 25 C -0.023 4.023 26 C -0.235 4.235 27 C -0.026 4.026 28 N -0.246 5.246 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.259 0.741 36 H 0.159 0.841 37 H 0.136 0.864 38 H 0.164 0.836 39 H 0.163 0.837 40 H 0.135 0.865 41 H 0.081 0.919 42 H 0.123 0.877 43 H 0.221 0.779 44 H 0.206 0.794 45 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 17.621 -1.729 -24.341 30.100 hybrid contribution -0.351 -0.561 0.009 0.662 sum 17.270 -2.290 -24.332 29.926 Atomic orbital electron populations 1.22101 0.93208 1.01969 1.03666 1.18658 0.93980 0.91650 0.80003 1.22071 1.00846 0.93828 1.03765 1.45927 1.54209 1.32799 1.03613 1.20819 0.79540 0.84207 0.84795 1.90700 1.38393 1.27782 1.87021 1.20678 1.04522 1.00149 0.87637 1.19131 0.92489 0.95845 0.94805 1.20956 1.02015 0.98573 0.98140 1.21120 0.93984 0.98634 0.95396 1.21284 0.98753 1.01908 1.04605 1.19872 0.86196 0.93976 0.93797 1.83937 1.31567 1.61674 1.37008 1.21784 1.10179 1.19367 0.97643 0.88251 1.26623 0.94947 0.97224 1.03466 1.70187 1.15153 1.29701 1.41083 0.84637 0.78327 0.78185 0.74970 1.18321 1.19515 1.17974 1.20198 0.98757 1.04204 0.97887 1.22623 0.91118 0.89882 0.92707 1.67891 1.11867 1.08474 1.36919 1.23925 0.93208 0.97479 0.87680 1.23372 1.00094 0.98738 1.01325 1.23924 0.89988 0.91042 0.97656 1.68042 1.23926 1.33393 0.99214 0.91675 0.90167 0.93212 0.92371 0.90353 0.91317 0.74096 0.84083 0.86411 0.83578 0.83727 0.86480 0.91890 0.87743 0.77942 0.79399 0.78282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.06 8.30 71.98 0.60 -3.46 16 2 C 0.25 5.87 0.95 2.86 0.00 5.88 16 3 C -0.15 -3.54 8.29 71.98 0.60 -2.94 16 4 N -0.71 -16.40 5.07 -426.32 -2.16 -18.56 16 5 C 0.52 14.95 7.24 87.66 0.63 15.59 16 6 O -0.56 -21.31 12.24 -3.04 -0.04 -21.34 16 7 C -0.09 -2.28 5.83 29.10 0.17 -2.12 16 8 C -0.02 -0.80 4.37 -19.88 -0.09 -0.88 16 9 C -0.18 -6.02 9.70 22.30 0.22 -5.81 16 10 C -0.07 -2.74 10.04 22.25 0.22 -2.51 16 11 C -0.25 -11.59 9.17 22.39 0.21 -11.39 16 12 C 0.11 5.99 6.65 22.58 0.15 6.14 16 13 O -0.23 -15.01 9.76 -22.74 -0.22 -15.23 16 14 C -0.41 -25.34 9.49 67.92 0.64 -24.70 16 15 H 0.10 5.60 5.21 -2.91 -0.02 5.59 16 16 C -0.03 -1.52 5.49 84.83 0.47 -1.06 16 17 N -0.92 -58.86 13.67 21.61 0.30 -58.56 16 18 Si 1.02 44.67 29.55 68.60 2.03 46.70 16 19 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 20 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 21 H -0.26 -10.44 7.11 99.48 0.71 -9.73 16 22 C -0.19 -8.86 9.65 22.39 0.22 -8.64 16 23 C 0.31 6.21 6.31 138.75 0.88 7.08 16 24 N -0.54 -8.99 8.71 -187.83 -1.64 -10.63 16 25 C 0.14 1.30 11.31 84.70 0.96 2.25 16 26 C -0.21 -1.25 10.17 22.44 0.23 -1.03 16 27 C 0.14 1.40 11.30 84.70 0.96 2.36 16 28 N -0.53 -9.74 9.81 -187.84 -1.84 -11.58 16 29 H 0.06 2.15 6.17 -2.39 -0.01 2.13 16 30 H 0.08 1.97 8.01 -2.38 -0.02 1.95 16 31 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 32 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 33 H 0.08 1.76 8.01 -2.39 -0.02 1.74 16 34 H 0.07 2.02 6.17 -2.38 -0.01 2.00 16 35 H 0.42 7.86 7.22 -92.71 -0.67 7.19 16 36 H 0.14 2.39 8.09 -2.38 -0.02 2.37 16 37 H 0.12 2.59 8.08 -2.39 -0.02 2.57 16 38 H 0.15 3.74 8.06 -2.91 -0.02 3.72 16 39 H 0.14 4.25 8.06 -2.91 -0.02 4.23 16 40 H 0.12 5.56 5.64 -2.91 -0.02 5.54 16 41 H 0.27 15.89 8.31 -92.71 -0.77 15.11 16 42 H 0.10 4.87 8.06 -2.91 -0.02 4.84 16 43 H 0.20 0.34 8.06 -2.91 -0.02 0.32 16 44 H 0.19 -0.42 8.06 -2.91 -0.02 -0.44 16 45 H 0.20 0.61 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -86.61 379.93 3.84 -82.77 By element: Atomic # 1 Polarization: 31.30 SS G_CDS: 0.36 Total: 31.66 kcal Atomic # 6 Polarization: -32.28 SS G_CDS: 7.05 Total: -25.23 kcal Atomic # 7 Polarization: -93.99 SS G_CDS: -5.34 Total: -99.33 kcal Atomic # 8 Polarization: -36.32 SS G_CDS: -0.26 Total: -36.58 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 2.03 Total: 46.70 kcal Total: -86.61 3.84 -82.77 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647391982.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.313 kcal (2) G-P(sol) polarization free energy of solvation -86.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds