Wall clock time and date at job start Sat Apr 11 2020 06:19:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39721 * 119.99214 * 172.82484 * 3 2 1 5 5 C 1.37599 * 120.00202 * 180.02562 * 4 3 2 6 6 C 1.39748 * 119.99718 * 359.97438 * 5 4 3 7 7 C 1.47683 * 120.00149 * 180.02562 * 6 5 4 8 8 O 1.21569 * 120.00379 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99870 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00009 * 180.02562 * 9 7 6 11 11 H 1.08993 * 112.84791 * 336.18762 * 10 9 7 12 12 C 1.53783 * 113.61731 * 107.50040 * 10 9 7 13 13 C 1.53784 * 87.08153 * 139.97673 * 12 10 9 14 14 H 1.09004 * 113.68528 * 89.12480 * 13 12 10 15 15 N 1.46896 * 113.61477 * 220.01383 * 13 12 10 16 16 C 1.46899 * 111.00338 * 252.49734 * 15 13 12 17 17 C 1.50698 * 109.46987 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31413 * 119.99930 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 89.99702 * 24 22 20 26 26 H 1.48498 * 109.47011 * 209.99970 * 24 22 20 27 27 H 1.48494 * 109.47201 * 329.99943 * 24 22 20 28 28 C 1.53779 * 87.08245 * 334.56774 * 13 12 10 29 29 C 1.39739 * 119.99217 * 0.27440 * 6 5 4 30 30 C 1.37599 * 119.99678 * 359.46686 * 29 6 5 31 31 H 4.51949 * 14.06494 * 0.02562 * 4 2 1 32 32 H 1.07994 * 119.99872 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.00396 * 179.97438 * 5 4 3 34 34 H 0.97006 * 119.99715 * 359.97438 * 9 7 6 35 35 H 1.08998 * 113.60942 * 25.43104 * 12 10 9 36 36 H 1.08998 * 113.60915 * 254.52392 * 12 10 9 37 37 H 1.00900 * 110.99693 * 128.54260 * 15 13 12 38 38 H 1.09003 * 109.46477 * 60.00383 * 16 15 13 39 39 H 1.08993 * 109.47002 * 300.00709 * 16 15 13 40 40 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 41 41 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 42 42 H 1.08997 * 113.61520 * 139.97942 * 28 13 12 43 43 H 1.09001 * 113.61248 * 270.88526 * 28 13 12 44 44 H 1.08006 * 120.00309 * 179.72708 * 29 6 5 45 45 H 1.08007 * 120.00278 * 180.23183 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3039 1.2016 -0.1511 5 6 4.6799 1.2024 -0.1517 6 6 5.3793 0.0020 -0.0006 7 6 6.8561 0.0028 -0.0006 8 8 7.4635 1.0476 -0.1325 9 7 7.5306 -1.1550 0.1447 10 6 8.9956 -1.1542 0.1452 11 1 9.4186 -0.2925 -0.3711 12 6 9.6114 -1.4073 1.5315 13 6 10.6584 -2.2806 0.8202 14 1 11.5376 -1.7279 0.4890 15 7 10.9985 -3.5068 1.5540 16 6 12.3413 -3.4131 2.1423 17 6 12.6539 -4.6860 2.8859 18 8 11.8385 -5.5833 2.9218 19 7 13.8400 -4.8278 3.5101 20 6 14.1222 -5.9836 4.1913 21 1 13.3959 -6.7822 4.2239 22 6 15.3427 -6.1275 4.8397 23 7 15.6130 -7.2352 5.4931 24 14 16.5986 -4.7459 4.7839 25 1 16.3784 -3.8300 5.9319 26 1 17.9670 -5.3174 4.8619 27 1 16.4488 -3.9918 3.5134 28 6 9.6126 -2.4950 -0.2867 29 6 4.6811 -1.1997 0.1454 30 6 3.3052 -1.1995 0.1512 31 1 -1.0500 -0.0011 0.0006 32 1 2.7634 2.1291 -0.2684 33 1 5.2194 2.1306 -0.2689 34 1 7.0460 -1.9887 0.2496 35 1 8.9599 -1.9665 2.2030 36 1 10.0297 -0.5130 1.9932 37 1 10.9203 -4.3178 0.9588 38 1 12.3770 -2.5709 2.8334 39 1 13.0753 -3.2647 1.3504 40 1 14.4922 -4.1103 3.4811 41 1 16.4652 -7.3358 5.9454 42 1 10.0319 -2.4788 -1.2926 43 1 8.9614 -3.3516 -0.1121 44 1 5.2215 -2.1280 0.2578 45 1 2.7655 -2.1277 0.2678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661631875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:55 Heat of formation + Delta-G solvation = 39.229586 kcal Electronic energy + Delta-G solvation = -26815.158138 eV Core-core repulsion = 22799.946916 eV Total energy + Delta-G solvation = -4015.211222 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.76807 -39.55818 -38.56748 -38.03212 -34.79980 -34.35283 -33.91463 -32.77331 -31.65525 -31.47615 -30.72484 -27.14870 -25.88991 -25.35168 -24.07046 -23.20592 -22.50801 -21.00578 -20.06610 -19.49571 -19.35220 -18.37829 -18.05778 -16.99239 -16.20735 -15.98596 -15.71534 -15.46803 -15.33296 -15.16198 -15.07732 -14.74517 -14.30631 -14.08110 -13.90495 -13.66307 -13.41509 -13.18541 -12.74770 -12.69104 -12.58175 -12.25623 -12.15652 -11.91842 -11.89530 -11.62053 -11.37457 -11.14589 -11.07121 -10.98826 -10.71311 -10.59740 -10.23001 -9.98135 -9.58079 -9.58035 -9.34746 -9.04271 -8.59061 -8.21695 -8.16403 -6.31867 -3.83354 0.02493 0.83606 2.07106 2.19467 2.80272 2.87460 3.02105 3.06889 3.14897 3.51518 3.67510 3.73263 4.09033 4.14104 4.24465 4.28313 4.35993 4.38888 4.45206 4.72502 4.75056 4.78180 4.94977 4.97507 5.00111 5.21066 5.29321 5.39305 5.44737 5.49808 5.59078 5.64398 5.73101 5.75301 5.80247 5.84672 5.86742 5.89640 5.94207 6.02832 6.25813 6.34733 6.96939 7.10860 7.19094 7.54316 7.57773 7.87012 8.13699 8.58977 8.94144 9.41760 9.81823 10.81246 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.001520 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.668290 B =18414.773993 C =19062.901025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.158 4.158 3 C 0.033 3.967 4 C -0.104 4.104 5 C -0.058 4.058 6 C -0.126 4.126 7 C 0.558 3.442 8 O -0.536 6.536 9 N -0.711 5.711 10 C 0.121 3.879 11 H 0.116 0.884 12 C -0.137 4.137 13 C 0.062 3.938 14 H 0.076 0.924 15 N -0.654 5.654 16 C 0.047 3.953 17 C 0.450 3.550 18 O -0.566 6.566 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.119 0.881 22 C 0.042 3.958 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.270 1.270 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.148 4.148 29 C -0.083 4.083 30 C -0.103 4.103 31 H 0.226 0.774 32 H 0.134 0.866 33 H 0.143 0.857 34 H 0.402 0.598 35 H 0.095 0.905 36 H 0.069 0.931 37 H 0.352 0.648 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.371 0.629 41 H 0.273 0.727 42 H 0.075 0.925 43 H 0.096 0.904 44 H 0.134 0.866 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.696 17.481 -14.633 32.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.158 4.158 3 C 0.033 3.967 4 C -0.122 4.122 5 C -0.077 4.077 6 C -0.129 4.129 7 C 0.346 3.654 8 O -0.414 6.414 9 N -0.361 5.361 10 C 0.016 3.984 11 H 0.134 0.866 12 C -0.177 4.177 13 C -0.049 4.049 14 H 0.094 0.906 15 N -0.286 5.286 16 C -0.086 4.086 17 C 0.235 3.765 18 O -0.448 6.448 19 N -0.230 5.230 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.195 1.195 28 C -0.187 4.187 29 C -0.102 4.102 30 C -0.121 4.121 31 H 0.243 0.757 32 H 0.152 0.848 33 H 0.160 0.840 34 H 0.238 0.762 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.173 0.827 38 H 0.106 0.894 39 H 0.063 0.937 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.094 0.906 43 H 0.114 0.886 44 H 0.152 0.848 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -23.933 17.653 -13.996 32.868 hybrid contribution 1.313 0.426 -0.558 1.489 sum -22.620 18.079 -14.554 32.409 Atomic orbital electron populations 1.24978 0.95826 0.98827 0.98317 1.20004 0.92024 1.01776 1.01996 1.16184 0.86764 0.93956 0.99781 1.21201 0.93780 0.97380 0.99881 1.21213 0.93386 0.98040 0.95032 1.20110 0.93136 0.94592 1.05045 1.18241 0.86983 0.83963 0.76254 1.90783 1.69832 1.31355 1.49453 1.45903 1.07297 1.09412 1.73517 1.22435 0.78557 0.98937 0.98444 0.86608 1.23590 0.97980 0.99638 0.96459 1.22802 0.95921 0.92775 0.93418 0.90611 1.60193 1.26806 1.03738 1.37911 1.21779 0.89932 0.98374 0.98539 1.19721 0.83173 0.89098 0.84468 1.90560 1.47571 1.42644 1.64009 1.42215 1.15066 1.17329 1.48377 1.19436 1.02771 0.94261 1.26989 0.86291 1.25036 0.97350 0.96943 0.96774 1.69622 1.24152 1.25195 1.33153 0.86669 0.81909 0.82149 0.78642 1.19581 1.20181 1.19533 1.23633 0.98462 0.97540 0.99074 1.21255 0.94136 0.97336 0.97457 1.21152 0.93782 0.97451 0.99673 0.75711 0.84807 0.83964 0.76227 0.88622 0.91218 0.82736 0.89439 0.93655 0.79672 0.91610 0.90648 0.88597 0.84841 0.84767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 19.25 29.55 0.57 -0.33 16 2 C -0.16 -1.18 13.23 -38.84 -0.51 -1.69 16 3 C 0.03 0.26 5.73 -106.87 -0.61 -0.36 16 4 C -0.10 -0.75 9.73 -39.26 -0.38 -1.14 16 5 C -0.06 -0.47 9.58 -39.25 -0.38 -0.85 16 6 C -0.13 -1.08 5.88 -104.92 -0.62 -1.69 16 7 C 0.56 5.81 7.77 -12.40 -0.10 5.71 16 8 O -0.54 -7.40 15.93 5.31 0.08 -7.32 16 9 N -0.71 -6.01 5.30 -54.01 -0.29 -6.30 16 10 C 0.12 1.12 4.24 -67.11 -0.28 0.83 16 11 H 0.12 1.17 7.46 -51.93 -0.39 0.78 16 12 C -0.14 -1.45 7.68 -25.92 -0.20 -1.65 16 13 C 0.06 0.67 4.14 -66.90 -0.28 0.39 16 14 H 0.08 0.76 7.87 -51.93 -0.41 0.35 16 15 N -0.65 -9.47 6.18 -107.13 -0.66 -10.13 16 16 C 0.05 0.75 6.01 -4.98 -0.03 0.72 16 17 C 0.45 10.07 7.82 -10.99 -0.09 9.99 16 18 O -0.57 -14.99 15.78 5.55 0.09 -14.91 16 19 N -0.59 -13.99 5.09 -10.96 -0.06 -14.04 16 20 C -0.31 -8.64 10.16 -14.93 -0.15 -8.79 16 21 H 0.12 3.84 7.39 -52.49 -0.39 3.45 16 22 C 0.04 1.15 5.50 -17.47 -0.10 1.05 16 23 N -0.88 -25.69 13.96 55.50 0.77 -24.92 16 24 Si 0.88 19.32 27.74 -169.99 -4.71 14.61 16 25 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 26 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 27 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 28 C -0.15 -1.26 7.40 -25.92 -0.19 -1.45 16 29 C -0.08 -0.55 9.52 -39.25 -0.37 -0.92 16 30 C -0.10 -0.69 9.73 -39.26 -0.38 -1.07 16 31 H 0.23 0.37 7.80 -54.09 -0.42 -0.05 16 32 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 33 H 0.14 1.14 7.64 -52.49 -0.40 0.73 16 34 H 0.40 2.47 6.74 -40.82 -0.28 2.19 16 35 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.35 5.23 8.25 -39.29 -0.32 4.90 16 38 H 0.09 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.05 0.64 8.13 -51.93 -0.42 0.21 16 40 H 0.37 7.70 5.76 -40.82 -0.24 7.47 16 41 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.10 0.79 8.12 -51.93 -0.42 0.37 16 44 H 0.13 0.57 6.38 -52.48 -0.34 0.23 16 45 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 LS Contribution 392.61 15.07 5.92 5.92 Total: -1.00 -35.55 392.61 -8.68 -44.23 By element: Atomic # 1 Polarization: 19.83 SS G_CDS: -5.72 Total: 14.11 kcal Atomic # 6 Polarization: 2.85 SS G_CDS: -4.10 Total: -1.25 kcal Atomic # 7 Polarization: -55.16 SS G_CDS: -0.23 Total: -55.39 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: 0.17 Total: -22.22 kcal Atomic # 14 Polarization: 19.32 SS G_CDS: -4.71 Total: 14.61 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.55 -8.68 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661631875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.458 kcal (2) G-P(sol) polarization free energy of solvation -35.548 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.229 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds