Wall clock time and date at job start Sat Apr 11 2020 06:19:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.43195 * 179.97438 * 2 1 4 4 C 1.39721 * 119.99214 * 172.82484 * 3 2 1 5 5 C 1.37599 * 120.00202 * 180.02562 * 4 3 2 6 6 C 1.39748 * 119.99718 * 359.97438 * 5 4 3 7 7 C 1.47683 * 120.00149 * 180.02562 * 6 5 4 8 8 O 1.21569 * 120.00379 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99870 * 180.02562 * 7 6 5 10 10 C 1.46500 * 120.00009 * 180.02562 * 9 7 6 11 11 H 1.08993 * 112.84791 * 336.18762 * 10 9 7 12 12 C 1.53783 * 113.61731 * 107.50040 * 10 9 7 13 13 C 1.53784 * 87.08153 * 139.97673 * 12 10 9 14 14 H 1.09004 * 113.68528 * 89.12480 * 13 12 10 15 15 N 1.46896 * 113.61477 * 220.01383 * 13 12 10 16 16 C 1.46899 * 111.00338 * 252.49734 * 15 13 12 17 17 C 1.50698 * 109.46987 * 179.97438 * 16 15 13 18 18 O 1.21293 * 120.00006 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99538 * 179.97438 * 17 16 15 20 20 C 1.37104 * 119.99773 * 179.72591 * 19 17 16 21 21 H 1.08002 * 119.99671 * 0.27660 * 20 19 17 22 22 C 1.38950 * 120.00030 * 180.27703 * 20 19 17 23 23 N 1.31413 * 119.99930 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 119.99918 * 0.02562 * 22 20 19 25 25 H 1.48498 * 109.47112 * 89.99702 * 24 22 20 26 26 H 1.48498 * 109.47011 * 209.99970 * 24 22 20 27 27 H 1.48494 * 109.47201 * 329.99943 * 24 22 20 28 28 C 1.53779 * 87.08245 * 334.56774 * 13 12 10 29 29 C 1.39739 * 119.99217 * 0.27440 * 6 5 4 30 30 C 1.37599 * 119.99678 * 359.46686 * 29 6 5 31 31 H 4.51949 * 14.06494 * 0.02562 * 4 2 1 32 32 H 1.07994 * 119.99872 * 359.97438 * 4 3 2 33 33 H 1.07997 * 120.00396 * 179.97438 * 5 4 3 34 34 H 0.97006 * 119.99715 * 359.97438 * 9 7 6 35 35 H 1.08998 * 113.60942 * 25.43104 * 12 10 9 36 36 H 1.08998 * 113.60915 * 254.52392 * 12 10 9 37 37 H 1.00900 * 110.99693 * 128.54260 * 15 13 12 38 38 H 1.09003 * 109.46477 * 60.00383 * 16 15 13 39 39 H 1.08993 * 109.47002 * 300.00709 * 16 15 13 40 40 H 0.97001 * 120.00485 * 0.02562 * 19 17 16 41 41 H 0.96999 * 119.99993 * 179.97438 * 23 22 20 42 42 H 1.08997 * 113.61520 * 139.97942 * 28 13 12 43 43 H 1.09001 * 113.61248 * 270.88526 * 28 13 12 44 44 H 1.08006 * 120.00309 * 179.72708 * 29 6 5 45 45 H 1.08007 * 120.00278 * 180.23183 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3039 1.2016 -0.1511 5 6 4.6799 1.2024 -0.1517 6 6 5.3793 0.0020 -0.0006 7 6 6.8561 0.0028 -0.0006 8 8 7.4635 1.0476 -0.1325 9 7 7.5306 -1.1550 0.1447 10 6 8.9956 -1.1542 0.1452 11 1 9.4186 -0.2925 -0.3711 12 6 9.6114 -1.4073 1.5315 13 6 10.6584 -2.2806 0.8202 14 1 11.5376 -1.7279 0.4890 15 7 10.9985 -3.5068 1.5540 16 6 12.3413 -3.4131 2.1423 17 6 12.6539 -4.6860 2.8859 18 8 11.8385 -5.5833 2.9218 19 7 13.8400 -4.8278 3.5101 20 6 14.1222 -5.9836 4.1913 21 1 13.3959 -6.7822 4.2239 22 6 15.3427 -6.1275 4.8397 23 7 15.6130 -7.2352 5.4931 24 14 16.5986 -4.7459 4.7839 25 1 16.3784 -3.8300 5.9319 26 1 17.9670 -5.3174 4.8619 27 1 16.4488 -3.9918 3.5134 28 6 9.6126 -2.4950 -0.2867 29 6 4.6811 -1.1997 0.1454 30 6 3.3052 -1.1995 0.1512 31 1 -1.0500 -0.0011 0.0006 32 1 2.7634 2.1291 -0.2684 33 1 5.2194 2.1306 -0.2689 34 1 7.0460 -1.9887 0.2496 35 1 8.9599 -1.9665 2.2030 36 1 10.0297 -0.5130 1.9932 37 1 10.9203 -4.3178 0.9588 38 1 12.3770 -2.5709 2.8334 39 1 13.0753 -3.2647 1.3504 40 1 14.4922 -4.1103 3.4811 41 1 16.4652 -7.3358 5.9454 42 1 10.0319 -2.4788 -1.2926 43 1 8.9614 -3.3516 -0.1121 44 1 5.2215 -2.1280 0.2578 45 1 2.7655 -2.1277 0.2678 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661631875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:54 Heat of formation + Delta-G solvation = 12.868219 kcal Electronic energy + Delta-G solvation = -26816.301252 eV Core-core repulsion = 22799.946916 eV Total energy + Delta-G solvation = -4016.354337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.50016 -40.46705 -39.95650 -39.02556 -36.16848 -35.54683 -34.87096 -33.83491 -33.60594 -32.03620 -31.29633 -28.62345 -26.67166 -26.33348 -25.46228 -23.89423 -23.27794 -21.75521 -21.32504 -20.83291 -20.19574 -19.96567 -18.78902 -17.98481 -17.40790 -16.99240 -16.61272 -16.56675 -16.39892 -16.09353 -15.98038 -15.80611 -15.45355 -15.08800 -14.93924 -14.68493 -14.47098 -14.27295 -14.16720 -14.01874 -13.37143 -13.30365 -13.28861 -13.14308 -12.90719 -12.44277 -12.40801 -12.22738 -12.15579 -12.00781 -11.90534 -11.53707 -11.49807 -11.45966 -11.06058 -10.41479 -10.24158 -10.12183 -10.10475 -9.60614 -9.30300 -8.40959 -6.01759 -0.55323 0.30468 1.30712 1.36224 1.44805 1.45243 1.73677 1.96548 2.08637 2.23378 2.25239 2.78403 2.95575 3.15732 3.26088 3.44195 3.54832 3.64498 3.70345 3.81569 3.88820 3.95954 4.05913 4.17726 4.24185 4.41647 4.43975 4.53295 4.55083 4.60331 4.82634 4.87005 4.89724 4.93947 5.02575 5.09301 5.16301 5.21762 5.31126 5.34194 5.51801 5.56749 5.74725 5.92989 6.12303 6.43454 6.48912 6.53216 6.60507 6.88633 7.13364 7.40609 7.96974 8.76654 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024265 B = 0.001520 C = 0.001468 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.668290 B =18414.773993 C =19062.901025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.208 4.208 3 C 0.027 3.973 4 C -0.109 4.109 5 C -0.067 4.067 6 C -0.144 4.144 7 C 0.557 3.443 8 O -0.578 6.578 9 N -0.700 5.700 10 C 0.126 3.874 11 H 0.110 0.890 12 C -0.139 4.139 13 C 0.061 3.939 14 H 0.093 0.907 15 N -0.670 5.670 16 C 0.061 3.939 17 C 0.449 3.551 18 O -0.614 6.614 19 N -0.592 5.592 20 C -0.330 4.330 21 H 0.056 0.944 22 C -0.014 4.014 23 N -0.934 5.934 24 Si 0.964 3.036 25 H -0.259 1.259 26 H -0.275 1.275 27 H -0.231 1.231 28 C -0.134 4.134 29 C -0.076 4.076 30 C -0.108 4.108 31 H 0.260 0.740 32 H 0.147 0.853 33 H 0.137 0.863 34 H 0.414 0.586 35 H 0.083 0.917 36 H 0.065 0.935 37 H 0.348 0.652 38 H 0.109 0.891 39 H 0.079 0.921 40 H 0.390 0.610 41 H 0.279 0.721 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.157 0.843 45 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.975 19.622 -16.006 34.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.208 4.208 3 C 0.027 3.973 4 C -0.127 4.127 5 C -0.086 4.086 6 C -0.147 4.147 7 C 0.346 3.654 8 O -0.459 6.459 9 N -0.351 5.351 10 C 0.021 3.979 11 H 0.128 0.872 12 C -0.179 4.179 13 C -0.049 4.049 14 H 0.110 0.890 15 N -0.303 5.303 16 C -0.072 4.072 17 C 0.237 3.763 18 O -0.498 6.498 19 N -0.233 5.233 20 C -0.459 4.459 21 H 0.074 0.926 22 C -0.212 4.212 23 N -0.575 5.575 24 Si 0.784 3.216 25 H -0.183 1.183 26 H -0.200 1.200 27 H -0.154 1.154 28 C -0.172 4.172 29 C -0.094 4.094 30 C -0.125 4.125 31 H 0.276 0.724 32 H 0.164 0.836 33 H 0.154 0.846 34 H 0.252 0.748 35 H 0.102 0.898 36 H 0.084 0.916 37 H 0.168 0.832 38 H 0.127 0.873 39 H 0.097 0.903 40 H 0.225 0.775 41 H 0.088 0.912 42 H 0.110 0.890 43 H 0.118 0.882 44 H 0.175 0.825 45 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -24.237 19.792 -15.388 34.870 hybrid contribution 1.165 -0.330 -0.121 1.217 sum -23.072 19.462 -15.508 33.935 Atomic orbital electron populations 1.25867 0.96593 0.96708 0.95919 1.20343 0.92627 1.03821 1.04023 1.16429 0.87441 0.94314 0.99145 1.21333 0.93409 0.98108 0.99872 1.21258 0.93884 0.97943 0.95495 1.20074 0.92179 0.95569 1.06844 1.18523 0.87706 0.83708 0.75458 1.90755 1.70715 1.32770 1.51613 1.45822 1.07156 1.09539 1.72567 1.22312 0.78855 0.99228 0.97539 0.87234 1.23568 0.98063 0.99319 0.96904 1.22909 0.96865 0.91269 0.93856 0.88954 1.60167 1.25967 1.05129 1.39035 1.21700 0.91727 0.94589 0.99163 1.21013 0.81766 0.90545 0.83016 1.90538 1.48919 1.45097 1.65275 1.42052 1.16279 1.16471 1.48545 1.19023 1.02478 0.94953 1.29443 0.92615 1.26095 0.99524 1.00322 0.95289 1.69804 1.25276 1.28207 1.34207 0.85377 0.77443 0.78056 0.80728 1.18323 1.20016 1.15394 1.23552 0.97482 0.96982 0.99189 1.21469 0.94264 0.97469 0.96200 1.21404 0.93872 0.97962 0.99309 0.72378 0.83559 0.84550 0.74806 0.89830 0.91584 0.83163 0.87309 0.90300 0.77492 0.91164 0.88997 0.88171 0.82524 0.83049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.18 19.25 74.32 1.43 0.26 16 2 C -0.21 -2.86 13.23 30.01 0.40 -2.46 16 3 C 0.03 0.40 5.73 -21.32 -0.12 0.27 16 4 C -0.11 -1.58 9.73 22.48 0.22 -1.36 16 5 C -0.07 -1.12 9.58 22.48 0.22 -0.91 16 6 C -0.14 -2.43 5.88 -20.05 -0.12 -2.55 16 7 C 0.56 11.48 7.77 86.74 0.67 12.16 16 8 O -0.58 -16.22 15.93 -3.93 -0.06 -16.28 16 9 N -0.70 -11.03 5.30 -443.05 -2.35 -13.38 16 10 C 0.13 2.12 4.24 45.52 0.19 2.31 16 11 H 0.11 2.07 7.46 -2.39 -0.02 2.05 16 12 C -0.14 -2.72 7.68 31.12 0.24 -2.48 16 13 C 0.06 1.15 4.14 45.44 0.19 1.34 16 14 H 0.09 1.50 7.87 -2.39 -0.02 1.48 16 15 N -0.67 -18.07 6.18 -492.86 -3.05 -21.12 16 16 C 0.06 1.78 6.01 85.56 0.51 2.29 16 17 C 0.45 19.90 7.82 87.66 0.69 20.58 16 18 O -0.61 -33.46 15.78 -3.07 -0.05 -33.51 16 19 N -0.59 -27.68 5.09 -306.98 -1.56 -29.24 16 20 C -0.33 -19.27 10.16 84.04 0.85 -18.42 16 21 H 0.06 3.88 7.39 -2.91 -0.02 3.86 16 22 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 23 N -0.93 -56.25 13.96 21.66 0.30 -55.95 16 24 Si 0.96 38.66 27.74 68.60 1.90 40.56 16 25 H -0.26 -9.91 7.11 99.48 0.71 -9.20 16 26 H -0.28 -10.95 7.11 99.48 0.71 -10.25 16 27 H -0.23 -7.74 6.52 99.48 0.65 -7.09 16 28 C -0.13 -1.93 7.40 31.12 0.23 -1.70 16 29 C -0.08 -0.91 9.52 22.48 0.21 -0.70 16 30 C -0.11 -1.32 9.73 22.48 0.22 -1.10 16 31 H 0.26 -0.04 7.80 -4.42 -0.03 -0.08 16 32 H 0.15 1.58 8.06 -2.91 -0.02 1.56 16 33 H 0.14 2.35 7.64 -2.91 -0.02 2.33 16 34 H 0.41 4.38 6.74 -92.70 -0.63 3.76 16 35 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 36 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.35 9.83 8.25 -89.69 -0.74 9.09 16 38 H 0.11 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.08 1.85 8.13 -2.39 -0.02 1.83 16 40 H 0.39 15.06 5.76 -92.71 -0.53 14.52 16 41 H 0.28 15.34 8.31 -92.71 -0.77 14.57 16 42 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.10 1.40 8.12 -2.39 -0.02 1.38 16 44 H 0.16 1.01 6.38 -2.91 -0.02 0.99 16 45 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 Total: -1.00 -83.36 392.61 0.73 -82.63 By element: Atomic # 1 Polarization: 39.97 SS G_CDS: -0.90 Total: 39.06 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: 6.50 Total: 7.23 kcal Atomic # 7 Polarization: -113.03 SS G_CDS: -6.66 Total: -119.69 kcal Atomic # 8 Polarization: -49.68 SS G_CDS: -0.11 Total: -49.79 kcal Atomic # 14 Polarization: 38.66 SS G_CDS: 1.90 Total: 40.56 kcal Total: -83.36 0.73 -82.63 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661631875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.495 kcal (2) G-P(sol) polarization free energy of solvation -83.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.627 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds