Wall clock time and date at job start Sat Apr 11 2020 06:20:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39720 * 119.99206 * 280.33782 * 3 2 1 5 5 C 1.37605 * 119.99867 * 180.02562 * 4 3 2 6 6 C 1.39750 * 119.99654 * 0.02562 * 5 4 3 7 7 C 1.47686 * 119.99956 * 180.02562 * 6 5 4 8 8 O 1.21565 * 120.00120 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99721 * 179.97438 * 7 6 5 10 10 C 1.46496 * 120.00258 * 179.97438 * 9 7 6 11 11 H 1.09004 * 112.85009 * 334.67148 * 10 9 7 12 12 C 1.53786 * 113.61381 * 105.86479 * 10 9 7 13 13 C 1.54050 * 86.98144 * 89.16531 * 12 10 9 14 14 H 1.08998 * 113.61325 * 270.88045 * 13 12 10 15 15 N 1.46902 * 113.69377 * 139.99107 * 13 12 10 16 16 C 1.46898 * 111.00055 * 107.46144 * 15 13 12 17 17 C 1.50700 * 109.47521 * 180.02562 * 16 15 13 18 18 O 1.21295 * 119.99355 * 0.02562 * 17 16 15 19 19 N 1.34778 * 120.00446 * 180.02562 * 17 16 15 20 20 C 1.37091 * 119.99820 * 180.02562 * 19 17 16 21 21 H 1.08000 * 120.00148 * 0.02562 * 20 19 17 22 22 C 1.38959 * 119.99997 * 180.02562 * 20 19 17 23 23 N 1.31407 * 120.00243 * 179.97438 * 22 20 19 24 24 Si 1.86801 * 119.99559 * 359.97438 * 22 20 19 25 25 H 1.48503 * 109.46903 * 90.00092 * 24 22 20 26 26 H 1.48500 * 109.46961 * 210.00001 * 24 22 20 27 27 H 1.48496 * 109.47339 * 330.00441 * 24 22 20 28 28 C 1.53773 * 113.61768 * 203.47515 * 10 9 7 29 29 C 1.39743 * 119.99220 * 0.27538 * 6 5 4 30 30 C 1.37599 * 119.99498 * 359.41676 * 29 6 5 31 31 H 4.51943 * 14.06596 * 359.97438 * 4 2 1 32 32 H 1.07997 * 120.00461 * 359.97438 * 4 3 2 33 33 H 1.07994 * 120.00076 * 180.02562 * 5 4 3 34 34 H 0.96999 * 120.00047 * 0.02562 * 9 7 6 35 35 H 1.09004 * 113.61439 * 203.67013 * 12 10 9 36 36 H 1.09002 * 113.61266 * 334.57214 * 12 10 9 37 37 H 1.00906 * 110.99678 * 343.51087 * 15 13 12 38 38 H 1.08999 * 109.47325 * 300.00457 * 16 15 13 39 39 H 1.09005 * 109.47133 * 60.00256 * 16 15 13 40 40 H 0.96997 * 120.00013 * 0.02562 * 19 17 16 41 41 H 0.97000 * 120.00104 * 179.97438 * 23 22 20 42 42 H 1.09000 * 113.61571 * 25.42974 * 28 10 9 43 43 H 1.09005 * 113.61978 * 156.33665 * 28 10 9 44 44 H 1.07998 * 119.99773 * 179.72594 * 29 6 5 45 45 H 1.08004 * 119.99558 * 180.27306 * 30 29 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6061 0.0006 0.0000 4 6 3.3046 -0.2162 1.1905 5 6 4.6807 -0.2151 1.1907 6 6 5.3794 0.0035 0.0003 7 6 6.8562 0.0041 0.0004 8 8 7.4641 -0.1850 1.0360 9 7 7.5300 0.2144 -1.1477 10 6 8.9950 0.2156 -1.1477 11 1 9.4180 0.4756 -0.1773 12 6 9.6121 -1.0480 -1.7701 13 6 9.5585 -0.3100 -3.1212 14 1 8.6226 -0.4545 -3.6609 15 7 10.7422 -0.5319 -3.9625 16 6 10.4239 -1.4069 -5.0987 17 6 11.6596 -1.6117 -5.9366 18 8 12.7029 -1.0813 -5.6182 19 7 11.6055 -2.3842 -7.0397 20 6 12.7298 -2.5709 -7.8016 21 1 13.6590 -2.0993 -7.5177 22 6 12.6739 -3.3669 -8.9392 23 7 13.7515 -3.5455 -9.6698 24 14 11.0669 -4.1832 -9.4299 25 1 10.3060 -3.2780 -10.3282 26 1 11.3545 -5.4564 -10.1380 27 1 10.2627 -4.4640 -8.2135 28 6 9.6104 1.0004 -2.3181 29 6 4.6805 0.2266 -1.1890 30 6 3.3045 0.2191 -1.1901 31 1 -1.0499 0.0004 0.0003 32 1 2.7646 -0.3839 2.1106 33 1 5.2206 -0.3831 2.1108 34 1 7.0450 0.3656 -1.9740 35 1 10.6253 -1.2545 -1.4252 36 1 8.9612 -1.9211 -1.7217 37 1 11.5060 -0.9069 -3.4202 38 1 10.0727 -2.3700 -4.7284 39 1 9.6452 -0.9452 -5.7059 40 1 10.7711 -2.8081 -7.2945 41 1 13.7125 -4.1015 -10.4637 42 1 8.9583 1.7800 -2.7119 43 1 10.6233 1.3530 -2.1229 44 1 5.2204 0.3999 -2.1082 45 1 2.7643 0.3871 -2.1102 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731451796.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:09 Heat of formation + Delta-G solvation = 41.096671 kcal Electronic energy + Delta-G solvation = -27056.064340 eV Core-core repulsion = 23040.934081 eV Total energy + Delta-G solvation = -4015.130259 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.89029 -39.65629 -38.58537 -38.05335 -34.78374 -34.38477 -33.90317 -32.70843 -31.66451 -31.50735 -30.72438 -27.14321 -25.87589 -25.31866 -24.16398 -23.23573 -22.71944 -21.43039 -19.90532 -19.51096 -19.30819 -18.42351 -18.21650 -16.71885 -16.18537 -16.13265 -15.74821 -15.38023 -15.35140 -15.29956 -14.84118 -14.68494 -14.42141 -14.22589 -13.97312 -13.67615 -13.41426 -13.14760 -12.85255 -12.77691 -12.65091 -12.37264 -12.21798 -11.96676 -11.89888 -11.66215 -11.60519 -11.19773 -11.02993 -10.93800 -10.61995 -10.55300 -10.33919 -9.98796 -9.62721 -9.58911 -9.43364 -9.09731 -8.60014 -8.20498 -8.12095 -6.32422 -3.83887 -0.02161 0.78921 2.02569 2.16163 2.69790 2.82819 3.00637 3.05126 3.13504 3.46984 3.63814 3.72215 4.06111 4.09645 4.20911 4.22327 4.32961 4.36530 4.47812 4.69152 4.69881 4.81941 4.90872 4.93932 4.96366 5.21169 5.28892 5.38987 5.40212 5.56605 5.60024 5.62221 5.65134 5.70744 5.75536 5.77928 5.82498 5.83406 5.90375 5.92953 6.21097 6.29293 6.93646 7.08934 7.11581 7.54039 7.57169 7.81347 8.13221 8.58270 8.93640 9.40993 9.81127 10.80696 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014037 B = 0.001786 C = 0.001619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1994.239024 B =15675.785505 C =17287.689830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.159 4.159 3 C 0.034 3.966 4 C -0.104 4.104 5 C -0.057 4.057 6 C -0.126 4.126 7 C 0.560 3.440 8 O -0.532 6.532 9 N -0.706 5.706 10 C 0.119 3.881 11 H 0.106 0.894 12 C -0.180 4.180 13 C 0.067 3.933 14 H 0.093 0.907 15 N -0.656 5.656 16 C 0.047 3.953 17 C 0.449 3.551 18 O -0.565 6.565 19 N -0.590 5.590 20 C -0.306 4.306 21 H 0.120 0.880 22 C 0.041 3.959 23 N -0.881 5.881 24 Si 0.880 3.120 25 H -0.271 1.271 26 H -0.277 1.277 27 H -0.270 1.270 28 C -0.131 4.131 29 C -0.084 4.084 30 C -0.103 4.103 31 H 0.226 0.774 32 H 0.135 0.865 33 H 0.143 0.857 34 H 0.400 0.600 35 H 0.096 0.904 36 H 0.069 0.931 37 H 0.354 0.646 38 H 0.045 0.955 39 H 0.086 0.914 40 H 0.370 0.630 41 H 0.273 0.727 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.133 0.867 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.134 7.044 19.525 34.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.159 4.159 3 C 0.034 3.966 4 C -0.122 4.122 5 C -0.076 4.076 6 C -0.129 4.129 7 C 0.347 3.653 8 O -0.410 6.410 9 N -0.357 5.357 10 C 0.013 3.987 11 H 0.124 0.876 12 C -0.221 4.221 13 C -0.044 4.044 14 H 0.111 0.889 15 N -0.287 5.287 16 C -0.086 4.086 17 C 0.234 3.766 18 O -0.447 6.447 19 N -0.230 5.230 20 C -0.435 4.435 21 H 0.137 0.863 22 C -0.161 4.161 23 N -0.521 5.521 24 Si 0.706 3.294 25 H -0.196 1.196 26 H -0.202 1.202 27 H -0.196 1.196 28 C -0.170 4.170 29 C -0.102 4.102 30 C -0.121 4.121 31 H 0.243 0.757 32 H 0.152 0.848 33 H 0.161 0.839 34 H 0.236 0.764 35 H 0.114 0.886 36 H 0.088 0.912 37 H 0.175 0.825 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.203 0.797 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.151 0.849 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -25.895 7.745 19.900 33.564 hybrid contribution -1.784 -1.621 -0.685 2.506 sum -27.679 6.124 19.215 34.247 Atomic orbital electron populations 1.24984 0.95832 0.98238 0.98758 1.19997 0.92017 1.02049 1.01832 1.16186 0.86782 0.99578 0.94034 1.21211 0.93762 0.99751 0.97468 1.21219 0.93405 0.95005 0.97970 1.20083 0.92987 1.04984 0.94837 1.18205 0.86973 0.76448 0.83648 1.90794 1.69755 1.48692 1.31731 1.45619 1.06856 1.72698 1.10544 1.21801 0.79014 0.97450 1.00444 0.87649 1.24252 1.02132 0.97812 0.97895 1.23164 0.94342 0.95831 0.91078 0.88899 1.60018 1.06877 1.51151 1.10685 1.21750 0.97687 0.95527 0.93595 1.19732 0.89887 0.83560 0.83376 1.90569 1.31620 1.51007 1.71462 1.42206 1.11654 1.44957 1.24168 1.19440 0.90626 1.28854 1.04535 0.86268 1.25042 0.97373 0.97517 0.96216 1.69619 1.27599 1.38618 1.16239 0.86669 0.83423 0.80112 0.79148 1.19595 1.20184 1.19562 1.23463 1.02315 0.97082 0.94166 1.21238 0.94141 0.97579 0.97277 1.21147 0.93764 0.99663 0.97490 0.75698 0.84752 0.83917 0.76377 0.88597 0.91176 0.82460 0.93726 0.89552 0.79716 0.91604 0.90779 0.87811 0.84928 0.84758 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.85 19.25 29.55 0.57 -0.28 16 2 C -0.16 -1.14 13.23 -38.83 -0.51 -1.66 16 3 C 0.03 0.25 5.73 -106.87 -0.61 -0.36 16 4 C -0.10 -0.72 9.73 -39.26 -0.38 -1.10 16 5 C -0.06 -0.45 9.58 -39.25 -0.38 -0.82 16 6 C -0.13 -1.03 5.88 -104.91 -0.62 -1.64 16 7 C 0.56 5.63 7.77 -12.40 -0.10 5.53 16 8 O -0.53 -7.25 15.95 5.31 0.08 -7.17 16 9 N -0.71 -5.67 5.21 -54.01 -0.28 -5.95 16 10 C 0.12 1.08 4.29 -67.12 -0.29 0.79 16 11 H 0.11 1.09 7.50 -51.93 -0.39 0.70 16 12 C -0.18 -1.76 7.51 -25.77 -0.19 -1.95 16 13 C 0.07 0.69 4.07 -66.76 -0.27 0.42 16 14 H 0.09 0.84 7.87 -51.93 -0.41 0.43 16 15 N -0.66 -9.48 6.25 -106.98 -0.67 -10.15 16 16 C 0.05 0.75 6.01 -4.98 -0.03 0.72 16 17 C 0.45 10.03 7.82 -10.99 -0.09 9.94 16 18 O -0.56 -15.03 15.78 5.54 0.09 -14.94 16 19 N -0.59 -13.92 5.09 -10.96 -0.06 -13.97 16 20 C -0.31 -8.62 10.16 -14.93 -0.15 -8.77 16 21 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 22 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 23 N -0.88 -25.64 13.96 55.50 0.77 -24.87 16 24 Si 0.88 19.19 27.74 -169.99 -4.71 14.48 16 25 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 26 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 27 H -0.27 -5.35 6.52 56.52 0.37 -4.98 16 28 C -0.13 -1.18 7.62 -25.92 -0.20 -1.38 16 29 C -0.08 -0.51 9.52 -39.25 -0.37 -0.89 16 30 C -0.10 -0.65 9.73 -39.27 -0.38 -1.03 16 31 H 0.23 0.33 7.80 -54.10 -0.42 -0.09 16 32 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 33 H 0.14 1.10 7.64 -52.49 -0.40 0.70 16 34 H 0.40 2.22 6.72 -40.82 -0.27 1.95 16 35 H 0.10 0.96 7.83 -51.93 -0.41 0.55 16 36 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.35 5.40 7.91 -39.29 -0.31 5.09 16 38 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.09 1.20 8.13 -51.93 -0.42 0.78 16 40 H 0.37 7.62 5.76 -40.82 -0.24 7.39 16 41 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 44 H 0.13 0.48 6.38 -52.49 -0.34 0.15 16 45 H 0.13 0.62 8.06 -52.48 -0.42 0.19 16 LS Contribution 392.03 15.07 5.91 5.91 Total: -1.00 -35.67 392.03 -8.66 -44.33 By element: Atomic # 1 Polarization: 19.49 SS G_CDS: -5.70 Total: 13.79 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: -4.10 Total: -1.45 kcal Atomic # 7 Polarization: -54.72 SS G_CDS: -0.23 Total: -54.95 kcal Atomic # 8 Polarization: -22.28 SS G_CDS: 0.17 Total: -22.11 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -4.71 Total: 14.48 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.67 -8.66 -44.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731451796.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.426 kcal (2) G-P(sol) polarization free energy of solvation -35.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds