Wall clock time and date at job start Sat Apr 11 2020 06:20:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46883 * 90.02242 * 6 5 4 8 8 O 1.21284 * 120.00083 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99508 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99700 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.38253 * 120.01773 * 269.72264 * 11 10 9 13 13 C 1.38151 * 119.95771 * 179.79014 * 12 11 10 14 14 C 1.38440 * 120.10366 * 0.45058 * 13 12 11 15 15 C 1.38074 * 119.93415 * 359.79911 * 14 13 12 16 16 C 1.38149 * 120.01532 * 90.00205 * 11 10 9 17 17 C 1.50780 * 108.85917 * 180.02562 * 15 14 13 18 18 N 1.46630 * 107.70390 * 359.97438 * 17 15 14 19 19 C 1.36941 * 126.56345 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99604 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00212 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99715 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00001 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47371 * 90.00236 * 23 21 19 25 25 H 1.48510 * 109.46915 * 210.00020 * 23 21 19 26 26 H 1.48501 * 109.47305 * 329.99931 * 23 21 19 27 27 C 1.46634 * 106.87654 * 0.02562 * 18 17 15 28 28 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 30 30 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 31 31 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 32 32 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 34 34 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 35 35 H 0.96996 * 120.00096 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.46792 * 299.99986 * 10 9 7 37 37 H 1.09007 * 109.47224 * 59.99285 * 10 9 7 38 38 H 1.07992 * 120.02217 * 0.02562 * 12 11 10 39 39 H 1.08000 * 119.94824 * 180.22604 * 13 12 11 40 40 H 1.07996 * 119.95079 * 359.97138 * 16 11 10 41 41 H 1.09001 * 109.81360 * 119.55552 * 17 15 14 42 42 H 1.09003 * 109.81045 * 240.45404 * 17 15 14 43 43 H 0.96997 * 119.99827 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.81650 * 119.54307 * 27 18 17 45 45 H 1.08997 * 109.81060 * 240.38133 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 6 5.2011 -1.8489 1.4211 8 8 4.5611 -1.3890 2.3430 9 7 6.2775 -2.6217 1.6673 10 6 6.6734 -2.9078 3.0485 11 6 7.8973 -3.7870 3.0484 12 6 7.7606 -5.1628 3.0530 13 6 8.8835 -5.9676 3.0485 14 6 10.1456 -5.3987 3.0489 15 6 10.2820 -4.0247 3.0495 16 6 9.1565 -3.2187 3.0496 17 6 11.7500 -3.6807 3.0492 18 7 12.5029 -4.9390 3.0489 19 6 13.8656 -5.0743 3.0490 20 1 14.4953 -4.1969 3.0498 21 6 14.4375 -6.3391 3.0482 22 7 13.6700 -7.4084 3.0467 23 14 16.2963 -6.5237 3.0491 24 1 16.7881 -6.5739 4.4494 25 1 16.6695 -7.7786 2.3480 26 1 16.9091 -5.3654 2.3505 27 6 11.5173 -6.0247 3.0484 28 8 2.2872 -1.0891 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 4.4157 1.3161 0.0011 33 1 4.5695 -2.4896 -0.5140 34 1 5.6081 -1.0440 -0.5130 35 1 6.7896 -2.9891 0.9300 36 1 6.8968 -1.9734 3.5633 37 1 5.8589 -3.4194 3.5614 38 1 6.7768 -5.6080 3.0562 39 1 8.7765 -7.0423 3.0484 40 1 9.2630 -2.1440 3.0501 41 1 11.9940 -3.1035 2.1573 42 1 11.9947 -3.1045 3.9416 43 1 14.0696 -8.2922 3.0458 44 1 11.6435 -6.6379 2.1561 45 1 11.6442 -6.6392 3.9397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733835975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:15 Heat of formation + Delta-G solvation = 42.852350 kcal Electronic energy + Delta-G solvation = -27473.497761 eV Core-core repulsion = 23458.443634 eV Total energy + Delta-G solvation = -4015.054127 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -43.60698 -40.13630 -39.46296 -36.46354 -35.01711 -34.62718 -33.53882 -32.33117 -31.42066 -30.75647 -29.72488 -27.66492 -26.42883 -25.83702 -24.38309 -22.69551 -22.09706 -21.57103 -20.72617 -20.48361 -20.12736 -17.79451 -17.33808 -17.07407 -16.65045 -16.30752 -15.88972 -15.53802 -14.89103 -14.72649 -14.63271 -14.35422 -14.34114 -14.21919 -13.83408 -13.49024 -13.37529 -13.29750 -13.08008 -12.99079 -12.75057 -12.25261 -12.00802 -11.90676 -11.73345 -11.61007 -11.52269 -11.12574 -10.88085 -10.82688 -10.54577 -10.34672 -10.25606 -10.17866 -9.84827 -9.32922 -9.03199 -8.95039 -8.48815 -8.08506 -6.91046 -5.86721 -3.20134 1.09524 1.50916 1.67603 2.24706 2.32534 2.41460 3.09987 3.34082 3.38877 3.40962 3.73630 4.06205 4.23434 4.36289 4.50073 4.57618 4.67194 4.70222 4.87243 4.90804 4.96546 5.08502 5.18460 5.19167 5.24972 5.38420 5.43320 5.51625 5.53281 5.59742 5.68732 5.79107 5.95825 6.04240 6.04621 6.13034 6.43134 6.47788 6.49868 6.69690 6.71655 6.98952 7.20317 7.26829 7.28951 7.44230 7.46967 7.63656 7.90380 8.07967 9.06146 9.66028 10.32684 11.27423 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.034113 B = 0.001639 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.610983 B =17074.532355 C =17410.701768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.190 3.810 3 N -0.485 5.485 4 C -0.023 4.023 5 C -0.029 4.029 6 C -0.056 4.056 7 C 0.512 3.488 8 O -0.533 6.533 9 N -0.721 5.721 10 C 0.171 3.829 11 C -0.133 4.133 12 C -0.103 4.103 13 C -0.112 4.112 14 C -0.079 4.079 15 C -0.107 4.107 16 C -0.083 4.083 17 C 0.175 3.825 18 N -0.600 5.600 19 C -0.228 4.228 20 H 0.084 0.916 21 C -0.006 4.006 22 N -0.923 5.923 23 Si 0.918 3.082 24 H -0.287 1.287 25 H -0.289 1.289 26 H -0.280 1.280 27 C 0.205 3.795 28 O -0.197 6.197 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.088 0.912 32 H 0.183 0.817 33 H 0.115 0.885 34 H 0.129 0.871 35 H 0.405 0.595 36 H 0.075 0.925 37 H 0.074 0.926 38 H 0.119 0.881 39 H 0.121 0.879 40 H 0.117 0.883 41 H 0.037 0.963 42 H 0.037 0.963 43 H 0.255 0.745 44 H 0.065 0.935 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.607 10.027 -7.401 25.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.016 4.016 3 N -0.214 5.214 4 C -0.162 4.162 5 C -0.082 4.082 6 C -0.096 4.096 7 C 0.297 3.703 8 O -0.409 6.409 9 N -0.373 5.373 10 C 0.048 3.952 11 C -0.134 4.134 12 C -0.122 4.122 13 C -0.131 4.131 14 C -0.080 4.080 15 C -0.107 4.107 16 C -0.102 4.102 17 C 0.050 3.950 18 N -0.327 5.327 19 C -0.355 4.355 20 H 0.102 0.898 21 C -0.203 4.203 22 N -0.570 5.570 23 Si 0.748 3.252 24 H -0.214 1.214 25 H -0.215 1.215 26 H -0.205 1.205 27 C 0.080 3.920 28 O -0.084 6.084 29 H 0.111 0.889 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.200 0.800 33 H 0.133 0.867 34 H 0.147 0.853 35 H 0.240 0.760 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.137 0.863 39 H 0.139 0.861 40 H 0.135 0.865 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.083 0.917 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -23.136 10.754 -6.719 26.384 hybrid contribution 1.628 -1.088 -0.253 1.974 sum -21.508 9.667 -6.972 24.590 Atomic orbital electron populations 1.20261 0.81309 1.05035 1.04805 1.26266 0.96441 0.78613 1.00329 1.70434 1.02057 1.30298 1.18656 1.22993 0.95169 0.92746 1.05263 1.22429 0.83157 0.94780 1.07855 1.20062 0.92424 1.00948 0.96211 1.20342 0.80521 0.78687 0.90749 1.90762 1.53072 1.51049 1.46047 1.46120 1.29832 1.51765 1.09562 1.20121 0.94209 0.98478 0.82375 1.19440 0.93386 0.93796 1.06776 1.20824 0.98118 0.92666 1.00551 1.20509 0.90882 0.99850 1.01847 1.21561 0.96841 0.95412 0.94223 1.20738 0.95803 0.94637 0.99554 1.20302 0.90566 0.99068 1.00283 1.19708 0.85675 0.90946 0.98704 1.43950 1.01774 0.99239 1.87722 1.18986 0.79089 0.92853 1.44560 0.89826 1.24836 0.98467 0.95235 1.01750 1.69918 1.33295 0.97239 1.56553 0.86022 0.84206 0.77263 0.77686 1.21416 1.21529 1.20528 1.19751 0.80090 0.90244 1.01879 1.84349 1.16477 1.37802 1.69812 0.88850 0.88092 0.89361 0.80001 0.86664 0.85275 0.76024 0.90707 0.90787 0.86328 0.86081 0.86503 0.94582 0.94571 0.93436 0.91746 0.91742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.29 10.51 36.00 0.38 0.08 16 2 C 0.19 1.93 8.34 -12.95 -0.11 1.82 16 3 N -0.48 -5.78 11.29 -11.10 -0.13 -5.90 16 4 C -0.02 -0.25 11.80 -17.77 -0.21 -0.46 16 5 C -0.03 -0.29 5.88 -35.69 -0.21 -0.50 16 6 C -0.06 -0.39 6.25 -29.03 -0.18 -0.57 16 7 C 0.51 5.25 7.82 -10.98 -0.09 5.16 16 8 O -0.53 -7.91 16.03 5.55 0.09 -7.82 16 9 N -0.72 -6.52 5.55 -61.46 -0.34 -6.86 16 10 C 0.17 1.85 5.80 -5.19 -0.03 1.82 16 11 C -0.13 -1.68 5.25 -104.65 -0.55 -2.23 16 12 C -0.10 -1.34 9.70 -39.61 -0.38 -1.73 16 13 C -0.11 -1.77 10.05 -39.54 -0.40 -2.16 16 14 C -0.08 -1.52 6.22 -104.57 -0.65 -2.17 16 15 C -0.11 -1.93 6.22 -104.57 -0.65 -2.58 16 16 C -0.08 -1.20 9.70 -39.54 -0.38 -1.58 16 17 C 0.18 3.63 7.25 -5.08 -0.04 3.59 16 18 N -0.60 -15.17 3.41 -175.67 -0.60 -15.77 16 19 C -0.23 -6.18 10.32 -15.06 -0.16 -6.33 16 20 H 0.08 2.17 7.83 -52.48 -0.41 1.76 16 21 C -0.01 -0.17 5.49 -17.43 -0.10 -0.27 16 22 N -0.92 -26.22 10.44 55.49 0.58 -25.64 16 23 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 24 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 27 C 0.20 4.89 5.40 -5.08 -0.03 4.86 16 28 O -0.20 -2.20 10.78 5.34 0.06 -2.14 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.18 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.12 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.40 2.86 8.46 -40.82 -0.35 2.51 16 36 H 0.07 0.85 8.09 -51.93 -0.42 0.43 16 37 H 0.07 0.82 8.08 -51.93 -0.42 0.40 16 38 H 0.12 1.26 8.06 -52.49 -0.42 0.84 16 39 H 0.12 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 44 H 0.06 1.68 7.49 -51.93 -0.39 1.29 16 45 H 0.06 1.70 7.49 -51.93 -0.39 1.31 16 LS Contribution 385.35 15.07 5.81 5.81 Total: -1.00 -35.05 385.35 -9.49 -44.54 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.16 Total: 0.64 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -3.78 Total: -3.25 kcal Atomic # 7 Polarization: -53.69 SS G_CDS: -0.49 Total: -54.17 kcal Atomic # 8 Polarization: -10.11 SS G_CDS: 0.15 Total: -9.97 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -35.05 -9.49 -44.54 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733835975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.392 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds