Wall clock time and date at job start Sat Apr 11 2020 06:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30250 * 125.62069 * 2 1 4 4 C 1.34485 * 108.70025 * 179.97438 * 3 2 1 5 5 C 1.34325 * 107.66767 * 0.02562 * 4 3 2 6 6 C 1.50702 * 126.44374 * 179.97438 * 5 4 3 7 7 C 1.50706 * 109.46883 * 90.02242 * 6 5 4 8 8 O 1.21284 * 120.00083 * 359.97438 * 7 6 5 9 9 N 1.34776 * 119.99508 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99700 * 180.02562 * 9 7 6 11 11 C 1.50702 * 109.47075 * 179.97438 * 10 9 7 12 12 C 1.38253 * 120.01773 * 269.72264 * 11 10 9 13 13 C 1.38151 * 119.95771 * 179.79014 * 12 11 10 14 14 C 1.38440 * 120.10366 * 0.45058 * 13 12 11 15 15 C 1.38074 * 119.93415 * 359.79911 * 14 13 12 16 16 C 1.38149 * 120.01532 * 90.00205 * 11 10 9 17 17 C 1.50780 * 108.85917 * 180.02562 * 15 14 13 18 18 N 1.46630 * 107.70390 * 359.97438 * 17 15 14 19 19 C 1.36941 * 126.56345 * 180.02562 * 18 17 15 20 20 H 1.08003 * 119.99604 * 0.02562 * 19 18 17 21 21 C 1.38811 * 120.00212 * 180.02562 * 19 18 17 22 22 N 1.31618 * 119.99715 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00001 * 180.02562 * 21 19 18 24 24 H 1.48501 * 109.47371 * 90.00236 * 23 21 19 25 25 H 1.48510 * 109.46915 * 210.00020 * 23 21 19 26 26 H 1.48501 * 109.47305 * 329.99931 * 23 21 19 27 27 C 1.46634 * 106.87654 * 0.02562 * 18 17 15 28 28 O 1.33974 * 125.61592 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47516 * 270.02701 * 1 2 3 30 30 H 1.09002 * 109.47000 * 30.03000 * 1 2 3 31 31 H 1.09005 * 109.47091 * 150.02246 * 1 2 3 32 32 H 1.08000 * 126.16216 * 180.02562 * 4 3 2 33 33 H 1.08999 * 109.46996 * 210.02003 * 6 5 4 34 34 H 1.09001 * 109.46826 * 330.02641 * 6 5 4 35 35 H 0.96996 * 120.00096 * 359.97438 * 9 7 6 36 36 H 1.08998 * 109.46792 * 299.99986 * 10 9 7 37 37 H 1.09007 * 109.47224 * 59.99285 * 10 9 7 38 38 H 1.07992 * 120.02217 * 0.02562 * 12 11 10 39 39 H 1.08000 * 119.94824 * 180.22604 * 13 12 11 40 40 H 1.07996 * 119.95079 * 359.97138 * 16 11 10 41 41 H 1.09001 * 109.81360 * 119.55552 * 17 15 14 42 42 H 1.09003 * 109.81045 * 240.45404 * 17 15 14 43 43 H 0.96997 * 119.99827 * 179.97438 * 22 21 19 44 44 H 1.09001 * 109.81650 * 119.54307 * 27 18 17 45 45 H 1.08997 * 109.81060 * 240.38133 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2656 1.0588 0.0000 4 6 3.5522 0.6674 0.0006 5 6 3.5697 -0.6758 0.0004 6 6 4.7936 -1.5551 0.0003 7 6 5.2011 -1.8489 1.4211 8 8 4.5611 -1.3890 2.3430 9 7 6.2775 -2.6217 1.6673 10 6 6.6734 -2.9078 3.0485 11 6 7.8973 -3.7870 3.0484 12 6 7.7606 -5.1628 3.0530 13 6 8.8835 -5.9676 3.0485 14 6 10.1456 -5.3987 3.0489 15 6 10.2820 -4.0247 3.0495 16 6 9.1565 -3.2187 3.0496 17 6 11.7500 -3.6807 3.0492 18 7 12.5029 -4.9390 3.0489 19 6 13.8656 -5.0743 3.0490 20 1 14.4953 -4.1969 3.0498 21 6 14.4375 -6.3391 3.0482 22 7 13.6700 -7.4084 3.0467 23 14 16.2963 -6.5237 3.0491 24 1 16.7881 -6.5739 4.4494 25 1 16.6695 -7.7786 2.3480 26 1 16.9091 -5.3654 2.3505 27 6 11.5173 -6.0247 3.0484 28 8 2.2872 -1.0891 0.0005 29 1 -0.3634 0.0005 1.0276 30 1 -0.3633 0.8897 -0.5143 31 1 -0.3633 -0.8902 -0.5135 32 1 4.4157 1.3161 0.0011 33 1 4.5695 -2.4896 -0.5140 34 1 5.6081 -1.0440 -0.5130 35 1 6.7896 -2.9891 0.9300 36 1 6.8968 -1.9734 3.5633 37 1 5.8589 -3.4194 3.5614 38 1 6.7768 -5.6080 3.0562 39 1 8.7765 -7.0423 3.0484 40 1 9.2630 -2.1440 3.0501 41 1 11.9940 -3.1035 2.1573 42 1 11.9947 -3.1045 3.9416 43 1 14.0696 -8.2922 3.0458 44 1 11.6435 -6.6379 2.1561 45 1 11.6442 -6.6392 3.9397 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733835975.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:14 Heat of formation + Delta-G solvation = 17.769640 kcal Electronic energy + Delta-G solvation = -27474.585429 eV Core-core repulsion = 23458.443634 eV Total energy + Delta-G solvation = -4016.141795 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.32321 -41.24760 -40.55133 -37.89679 -35.77246 -35.76726 -34.25566 -34.01706 -32.55842 -31.64513 -31.10064 -29.00378 -27.75820 -27.03288 -25.63963 -23.62999 -23.39751 -22.30596 -22.10155 -21.54116 -21.30817 -19.00073 -18.56974 -18.04629 -17.41476 -17.24262 -17.08674 -16.68984 -16.14871 -16.07262 -16.04501 -15.63403 -15.32729 -15.10683 -14.87274 -14.61654 -14.48897 -14.08366 -13.82130 -13.73048 -13.50186 -13.46835 -13.33031 -13.24084 -13.05122 -13.04574 -12.96717 -12.69843 -12.29231 -12.10474 -11.98402 -11.82978 -11.64156 -11.58346 -11.20699 -10.90830 -10.14897 -9.72554 -9.69779 -9.55342 -8.84944 -7.93937 -5.30675 0.24032 0.42855 0.45544 1.46129 1.48538 1.55844 1.57363 1.60583 1.71064 2.29010 2.44609 2.86575 3.17072 3.28770 3.46363 3.54015 3.61337 3.78706 3.92166 3.97415 4.05752 4.14375 4.15952 4.34684 4.40729 4.50939 4.63282 4.65001 4.67403 4.69952 4.74943 4.78869 4.84408 4.97676 5.02492 5.04612 5.18082 5.29385 5.32059 5.34631 5.39228 5.45355 5.52026 5.56725 5.86895 6.04722 6.09683 6.50270 6.72070 7.00287 7.18120 7.65308 8.32916 9.19206 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.034113 B = 0.001639 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 820.610983 B =17074.532355 C =17410.701768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.183 3.817 3 N -0.520 5.520 4 C -0.044 4.044 5 C -0.039 4.039 6 C -0.049 4.049 7 C 0.515 3.485 8 O -0.583 6.583 9 N -0.709 5.709 10 C 0.176 3.824 11 C -0.108 4.108 12 C -0.087 4.087 13 C -0.112 4.112 14 C -0.111 4.111 15 C -0.118 4.118 16 C -0.074 4.074 17 C 0.171 3.829 18 N -0.624 5.624 19 C -0.246 4.246 20 H 0.091 0.909 21 C -0.063 4.063 22 N -0.952 5.952 23 Si 0.987 3.013 24 H -0.285 1.285 25 H -0.292 1.292 26 H -0.266 1.266 27 C 0.220 3.780 28 O -0.212 6.212 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.108 0.892 32 H 0.198 0.802 33 H 0.142 0.858 34 H 0.165 0.835 35 H 0.418 0.582 36 H 0.075 0.925 37 H 0.078 0.922 38 H 0.154 0.846 39 H 0.130 0.870 40 H 0.142 0.858 41 H 0.044 0.956 42 H 0.040 0.960 43 H 0.251 0.749 44 H 0.025 0.975 45 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.446 11.174 -8.268 28.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.023 4.023 3 N -0.250 5.250 4 C -0.182 4.182 5 C -0.092 4.092 6 C -0.088 4.088 7 C 0.302 3.698 8 O -0.463 6.463 9 N -0.362 5.362 10 C 0.053 3.947 11 C -0.108 4.108 12 C -0.106 4.106 13 C -0.130 4.130 14 C -0.112 4.112 15 C -0.118 4.118 16 C -0.093 4.093 17 C 0.046 3.954 18 N -0.351 5.351 19 C -0.374 4.374 20 H 0.108 0.892 21 C -0.256 4.256 22 N -0.600 5.600 23 Si 0.814 3.186 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.190 1.190 27 C 0.095 3.905 28 O -0.099 6.099 29 H 0.121 0.879 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.215 0.785 33 H 0.160 0.840 34 H 0.182 0.818 35 H 0.255 0.745 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.172 0.828 39 H 0.148 0.852 40 H 0.159 0.841 41 H 0.062 0.938 42 H 0.057 0.943 43 H 0.060 0.940 44 H 0.043 0.957 45 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -24.967 11.923 -7.611 28.695 hybrid contribution 2.059 -1.366 0.028 2.471 sum -22.908 10.557 -7.584 26.339 Atomic orbital electron populations 1.20525 0.78395 1.06612 1.05875 1.27228 0.98016 0.78118 0.98963 1.70427 1.02980 1.31435 1.20168 1.23393 0.95444 0.93633 1.05685 1.22983 0.83692 0.95197 1.07358 1.20230 0.92063 1.02179 0.94329 1.20816 0.79818 0.77649 0.91523 1.90753 1.54686 1.53019 1.47816 1.45949 1.29633 1.51331 1.09243 1.20008 0.93170 0.98052 0.83506 1.19609 0.93373 0.93910 1.03921 1.21153 0.98550 0.92597 0.98258 1.20688 0.90203 1.00852 1.01264 1.21183 0.95751 0.95859 0.98372 1.20583 0.95236 0.94477 1.01510 1.20502 0.89784 0.99976 0.99026 1.19811 0.87396 0.89236 0.98938 1.44248 1.01864 1.01393 1.87564 1.19415 0.80564 0.93294 1.44099 0.89160 1.25746 1.03054 0.94971 1.01877 1.70152 1.34923 0.97360 1.57607 0.84960 0.78782 0.77262 0.77585 1.21143 1.21840 1.19022 1.19283 0.83131 0.89740 0.98316 1.84357 1.17131 1.38365 1.70076 0.87854 0.86943 0.87331 0.78490 0.84021 0.81771 0.74467 0.90720 0.90335 0.82800 0.85215 0.84057 0.93813 0.94271 0.94029 0.95687 0.95994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.50 10.51 71.24 0.75 0.25 16 2 C 0.18 3.54 8.34 88.34 0.74 4.28 16 3 N -0.52 -12.10 11.29 -303.83 -3.43 -15.53 16 4 C -0.04 -0.89 11.80 83.39 0.98 0.09 16 5 C -0.04 -0.73 5.88 24.79 0.15 -0.58 16 6 C -0.05 -0.50 6.25 29.10 0.18 -0.32 16 7 C 0.51 8.90 7.82 87.66 0.69 9.59 16 8 O -0.58 -16.14 16.03 -3.04 -0.05 -16.19 16 9 N -0.71 -9.90 5.55 -466.76 -2.59 -12.49 16 10 C 0.18 3.10 5.80 85.63 0.50 3.59 16 11 C -0.11 -2.29 5.25 -19.88 -0.10 -2.39 16 12 C -0.09 -1.95 9.70 22.25 0.22 -1.74 16 13 C -0.11 -3.36 10.05 22.30 0.22 -3.14 16 14 C -0.11 -4.32 6.22 -19.83 -0.12 -4.44 16 15 C -0.12 -4.18 6.22 -19.83 -0.12 -4.30 16 16 C -0.07 -1.91 9.70 22.30 0.22 -1.70 16 17 C 0.17 7.17 7.25 85.63 0.62 7.79 16 18 N -0.62 -32.91 3.41 -709.70 -2.42 -35.33 16 19 C -0.25 -13.79 10.32 84.03 0.87 -12.92 16 20 H 0.09 4.77 7.83 -2.91 -0.02 4.75 16 21 C -0.06 -3.57 5.49 84.86 0.47 -3.11 16 22 N -0.95 -56.91 10.44 21.65 0.23 -56.69 16 23 Si 0.99 45.04 29.55 68.60 2.03 47.07 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 25 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 26 H -0.27 -11.39 7.11 99.48 0.71 -10.68 16 27 C 0.22 11.21 5.40 85.63 0.46 11.67 16 28 O -0.21 -4.43 10.78 -3.79 -0.04 -4.47 16 29 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.11 0.48 8.14 -2.38 -0.02 0.46 16 32 H 0.20 3.00 8.06 -2.91 -0.02 2.98 16 33 H 0.14 0.75 8.14 -2.39 -0.02 0.74 16 34 H 0.16 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.42 3.91 8.46 -92.71 -0.78 3.12 16 36 H 0.07 1.41 8.09 -2.39 -0.02 1.39 16 37 H 0.08 1.41 8.08 -2.38 -0.02 1.39 16 38 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.13 3.61 8.06 -2.91 -0.02 3.58 16 40 H 0.14 2.98 8.06 -2.91 -0.02 2.95 16 41 H 0.04 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 44 H 0.03 1.42 7.49 -2.39 -0.02 1.40 16 45 H 0.02 1.26 7.49 -2.39 -0.02 1.24 16 Total: -1.00 -81.75 385.35 0.66 -81.08 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.24 Total: 9.93 kcal Atomic # 6 Polarization: -4.09 SS G_CDS: 6.70 Total: 2.61 kcal Atomic # 7 Polarization: -111.82 SS G_CDS: -8.21 Total: -120.03 kcal Atomic # 8 Polarization: -20.57 SS G_CDS: -0.09 Total: -20.66 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -81.75 0.66 -81.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733835975.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.851 kcal (2) G-P(sol) polarization free energy of solvation -81.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds