Wall clock time and date at job start Sat Apr 11 2020 06:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46909 * 2 1 4 4 C 1.53001 * 109.47079 * 239.99606 * 2 1 3 5 5 C 1.53000 * 109.46798 * 185.79161 * 4 2 1 6 6 H 1.09002 * 109.47327 * 305.80547 * 5 4 2 7 7 C 1.52997 * 109.47050 * 185.79889 * 5 4 2 8 8 O 1.42892 * 109.47632 * 305.00263 * 7 5 4 9 9 N 1.46504 * 109.47179 * 65.80182 * 5 4 2 10 10 C 1.46503 * 119.99719 * 54.86969 * 9 5 4 11 11 S 1.65600 * 120.00050 * 234.86860 * 9 5 4 12 12 O 1.42097 * 106.40029 * 210.07763 * 11 9 5 13 13 O 1.42090 * 106.40369 * 343.00264 * 11 9 5 14 14 C 1.76205 * 107.21637 * 96.54199 * 11 9 5 15 15 C 1.38638 * 119.74667 * 263.49306 * 14 11 9 16 16 C 1.37621 * 120.24711 * 179.72267 * 15 14 11 17 17 C 1.40716 * 119.74366 * 0.56633 * 16 15 14 18 18 C 1.41392 * 120.24503 * 179.68281 * 17 16 15 19 19 H 1.08001 * 119.99873 * 29.15561 * 18 17 16 20 20 C 1.39939 * 119.99970 * 209.15944 * 18 17 16 21 21 N 1.30821 * 120.00592 * 10.04053 * 20 18 17 22 22 Si 1.86809 * 119.99927 * 190.04359 * 20 18 17 23 23 H 1.48504 * 109.47041 * 59.99705 * 22 20 18 24 24 H 1.48498 * 109.47183 * 180.02562 * 22 20 18 25 25 H 1.48498 * 109.46969 * 300.00008 * 22 20 18 26 26 C 1.40718 * 119.51234 * 359.70691 * 17 16 15 27 27 C 1.37614 * 119.74422 * 359.97438 * 26 17 16 28 28 H 1.08999 * 109.47340 * 60.00540 * 1 2 3 29 29 H 1.09004 * 109.47201 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47736 * 300.00249 * 1 2 3 31 31 H 1.09004 * 109.46656 * 119.99574 * 2 1 3 32 32 H 1.09002 * 109.46782 * 177.33353 * 3 2 1 33 33 H 1.09004 * 109.47402 * 297.32916 * 3 2 1 34 34 H 1.09000 * 109.47608 * 57.32846 * 3 2 1 35 35 H 1.08996 * 109.47335 * 305.79317 * 4 2 1 36 36 H 1.09004 * 109.46796 * 65.79745 * 4 2 1 37 37 H 1.09004 * 109.46711 * 65.00638 * 7 5 4 38 38 H 1.09005 * 109.47026 * 184.99620 * 7 5 4 39 39 H 0.96700 * 114.00928 * 179.97438 * 8 7 5 40 40 H 1.09003 * 109.46975 * 90.00090 * 10 9 5 41 41 H 1.08999 * 109.46792 * 210.00423 * 10 9 5 42 42 H 1.09004 * 109.47327 * 329.99777 * 10 9 5 43 43 H 1.08001 * 119.87194 * 359.97102 * 15 14 11 44 44 H 1.08003 * 120.12522 * 180.27098 * 16 15 14 45 45 H 0.96996 * 120.00564 * 179.97438 * 21 20 18 46 46 H 1.07994 * 120.12842 * 179.97438 * 26 17 16 47 47 H 1.08001 * 119.87862 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5630 -0.8486 -1.1785 6 1 4.0031 0.1363 -1.0216 7 6 4.0869 -1.4384 -2.4894 8 8 3.4235 -2.6760 -2.7537 9 7 3.9284 -1.7294 -0.0663 10 6 3.3656 -3.0797 0.0141 11 16 4.9774 -1.1988 1.1000 12 8 5.6658 -2.3482 1.5735 13 8 5.6398 -0.0646 0.5580 14 6 4.0056 -0.6108 2.4472 15 6 3.7276 0.7431 2.5554 16 6 2.9649 1.2128 3.6002 17 6 2.4768 0.3146 4.5672 18 6 1.6977 0.7866 5.6487 19 1 1.0873 1.6695 5.5296 20 6 1.7178 0.1097 6.8733 21 7 2.5970 -0.8358 7.0839 22 14 0.4888 0.5561 8.2075 23 1 -0.8908 0.3417 7.7015 24 1 0.7185 -0.3003 9.3987 25 1 0.6622 1.9823 8.5830 26 6 2.7701 -1.0567 4.4503 27 6 3.5292 -1.5048 3.3936 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3635 0.5139 0.8899 31 1 1.8933 -0.5138 0.8901 32 1 3.1289 1.4428 0.0478 33 1 1.7162 1.9424 -0.9130 34 1 1.6380 1.9700 0.8650 35 1 1.5945 -1.7147 -1.3025 36 1 1.7638 -0.1511 -2.1362 37 1 3.8934 -0.7410 -3.3045 38 1 5.1599 -1.6117 -2.4066 39 1 3.7064 -3.1073 -3.5717 40 1 4.0172 -3.7768 -0.5128 41 1 3.2841 -3.3776 1.0594 42 1 2.3768 -3.0891 -0.4446 43 1 4.1077 1.4312 1.8148 44 1 2.7458 2.2673 3.6802 45 1 2.6112 -1.3047 7.9328 46 1 2.4009 -1.7547 5.1870 47 1 3.7553 -2.5569 3.3015 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001771658269.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:20:23 Heat of formation + Delta-G solvation = -141.976059 kcal Electronic energy + Delta-G solvation = -29875.317604 eV Core-core repulsion = 25955.399916 eV Total energy + Delta-G solvation = -3919.917688 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -39.72123 -39.33403 -38.20014 -36.85866 -36.80883 -35.75687 -35.45739 -32.04069 -31.30686 -31.16112 -27.98633 -27.58939 -27.30896 -26.53165 -23.28465 -22.93721 -22.17038 -20.76556 -19.74205 -19.39645 -18.99277 -18.32021 -17.75575 -17.21710 -16.95930 -16.19550 -15.95573 -15.84905 -15.50922 -15.20332 -14.92376 -14.85160 -14.47999 -14.21014 -14.01015 -13.93808 -13.72527 -13.59227 -13.48163 -13.29912 -13.09117 -12.99758 -12.88461 -12.80710 -12.69925 -12.65736 -12.56896 -12.32270 -12.17561 -11.99691 -11.59097 -11.47007 -11.37574 -11.31894 -11.22959 -11.17073 -10.71846 -9.84125 -9.66372 -9.48067 -8.77908 -6.63329 -0.35571 0.50813 1.09194 1.36012 1.43909 1.49068 2.12018 2.18232 2.58519 2.91148 3.47799 3.52622 3.55052 3.69878 4.07159 4.15447 4.20093 4.27791 4.30637 4.35957 4.48825 4.57085 4.66821 4.78904 4.83074 4.85990 4.89258 4.93692 4.96645 5.00629 5.04624 5.10216 5.12654 5.16369 5.17730 5.26447 5.39500 5.48759 5.56105 5.61477 5.63232 5.67722 5.77001 5.86047 5.97268 6.19806 6.53142 6.72909 6.83918 7.05100 8.15617 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015954 B = 0.003960 C = 0.003594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.662520 B = 7068.491883 C = 7788.821162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.109 4.109 3 C -0.150 4.150 4 C -0.104 4.104 5 C 0.137 3.863 6 H 0.104 0.896 7 C 0.074 3.926 8 O -0.573 6.573 9 N -0.985 5.985 10 C 0.106 3.894 11 S 2.706 3.294 12 O -1.007 7.007 13 O -0.996 6.996 14 C -0.783 4.783 15 C 0.010 3.990 16 C -0.245 4.245 17 C 0.119 3.881 18 C -0.473 4.473 19 H 0.089 0.911 20 C 0.033 3.967 21 N -0.812 5.812 22 Si 0.991 3.009 23 H -0.256 1.256 24 H -0.267 1.267 25 H -0.257 1.257 26 C -0.197 4.197 27 C -0.020 4.020 28 H 0.068 0.932 29 H 0.052 0.948 30 H 0.038 0.962 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.072 0.928 34 H 0.043 0.957 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.041 0.959 39 H 0.393 0.607 40 H 0.062 0.938 41 H 0.050 0.950 42 H 0.092 0.908 43 H 0.122 0.878 44 H 0.108 0.892 45 H 0.295 0.705 46 H 0.109 0.891 47 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.009 -1.192 -15.961 16.500 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.128 4.128 3 C -0.207 4.207 4 C -0.143 4.143 5 C 0.031 3.969 6 H 0.122 0.878 7 C -0.006 4.006 8 O -0.381 6.381 9 N -0.823 5.823 10 C -0.039 4.039 11 S 2.804 3.196 12 O -0.998 6.998 13 O -0.987 6.987 14 C -0.876 4.876 15 C -0.010 4.010 16 C -0.266 4.266 17 C 0.115 3.885 18 C -0.500 4.500 19 H 0.107 0.893 20 C -0.185 4.185 21 N -0.436 5.436 22 Si 0.811 3.189 23 H -0.180 1.180 24 H -0.192 1.192 25 H -0.181 1.181 26 C -0.217 4.217 27 C -0.040 4.040 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.062 0.938 35 H 0.097 0.903 36 H 0.109 0.891 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.242 0.758 40 H 0.081 0.919 41 H 0.068 0.932 42 H 0.110 0.890 43 H 0.139 0.861 44 H 0.126 0.874 45 H 0.106 0.894 46 H 0.127 0.873 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -3.275 -1.272 -15.311 15.709 hybrid contribution -0.443 0.102 1.060 1.154 sum -3.718 -1.170 -14.251 14.775 Atomic orbital electron populations 1.21722 0.94756 1.01486 1.01454 1.21198 0.96275 0.96408 0.98916 1.21972 1.00508 0.96333 1.01934 1.21806 0.93062 1.01647 0.97775 1.21392 0.97431 0.93050 0.85008 0.87785 1.22465 0.95221 0.86933 0.95958 1.86479 1.67029 1.36641 1.47924 1.57269 1.64878 1.22918 1.37271 1.21422 1.00692 0.80871 1.00886 1.00870 0.73740 0.72036 0.72962 1.93453 1.72401 1.51920 1.82020 1.93423 1.73359 1.52611 1.79295 1.29633 1.32679 1.02685 1.22596 1.20337 0.92465 0.92699 0.95480 1.21207 1.06941 0.98297 1.00120 1.18153 0.87489 0.91859 0.90974 1.20140 1.23072 1.11044 0.95773 0.89253 1.26954 0.96447 0.92922 1.02162 1.69841 1.29405 1.18164 1.26156 0.85105 0.78281 0.79598 0.75963 1.17969 1.19162 1.18124 1.21355 1.05172 0.96112 0.99093 1.20384 0.93555 0.97128 0.92981 0.91290 0.92860 0.94315 0.92560 0.93466 0.90861 0.93789 0.90317 0.89133 0.90044 0.94116 0.75799 0.91947 0.93169 0.88996 0.86052 0.87364 0.89434 0.87302 0.87390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.32 9.19 71.98 0.66 -2.66 16 2 C -0.11 -2.93 2.87 -10.79 -0.03 -2.96 16 3 C -0.15 -3.99 7.76 71.98 0.56 -3.43 16 4 C -0.10 -2.26 3.73 30.59 0.11 -2.15 16 5 C 0.14 3.34 2.41 44.99 0.11 3.45 16 6 H 0.10 2.72 5.10 -2.39 -0.01 2.71 16 7 C 0.07 1.35 6.83 71.98 0.49 1.84 16 8 O -0.57 -9.30 10.96 -148.98 -1.63 -10.94 16 9 N -0.98 -29.54 2.47 -516.49 -1.27 -30.82 16 10 C 0.11 2.87 8.65 127.77 1.11 3.98 16 11 S 2.71 105.76 5.61 -56.49 -0.32 105.45 16 12 O -1.01 -44.87 16.74 -128.00 -2.14 -47.01 16 13 O -1.00 -40.67 15.55 -128.00 -1.99 -42.66 16 14 C -0.78 -34.28 4.89 22.46 0.11 -34.17 16 15 C 0.01 0.43 7.80 22.22 0.17 0.61 16 16 C -0.25 -11.55 9.80 22.73 0.22 -11.33 16 17 C 0.12 6.12 5.55 -21.29 -0.12 6.01 16 18 C -0.47 -23.79 9.06 23.46 0.21 -23.58 16 19 H 0.09 4.23 7.87 -2.91 -0.02 4.21 16 20 C 0.03 1.54 5.26 85.26 0.45 1.99 16 21 N -0.81 -40.57 10.83 21.82 0.24 -40.33 16 22 Si 0.99 35.54 29.57 68.60 2.03 37.57 16 23 H -0.26 -8.88 7.11 99.48 0.71 -8.17 16 24 H -0.27 -9.15 7.11 99.48 0.71 -8.44 16 25 H -0.26 -8.94 7.11 99.48 0.71 -8.23 16 26 C -0.20 -10.15 8.66 22.73 0.20 -9.95 16 27 C -0.02 -0.97 9.49 22.22 0.21 -0.75 16 28 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.06 1.88 6.10 -2.38 -0.01 1.87 16 32 H 0.05 1.33 5.14 -2.39 -0.01 1.32 16 33 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 34 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.08 1.71 5.87 -2.39 -0.01 1.70 16 36 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.08 1.05 8.14 -2.38 -0.02 1.03 16 38 H 0.04 0.80 8.14 -2.38 -0.02 0.78 16 39 H 0.39 2.93 9.12 -74.06 -0.68 2.25 16 40 H 0.06 1.58 7.92 -2.39 -0.02 1.56 16 41 H 0.05 1.46 7.95 -2.39 -0.02 1.44 16 42 H 0.09 2.16 5.84 -2.39 -0.01 2.14 16 43 H 0.12 4.79 6.23 -2.91 -0.02 4.78 16 44 H 0.11 4.73 8.06 -2.91 -0.02 4.71 16 45 H 0.29 13.29 8.30 -92.71 -0.77 12.52 16 46 H 0.11 5.82 6.22 -2.91 -0.02 5.80 16 47 H 0.11 4.77 7.75 -2.91 -0.02 4.74 16 Total: -1.00 -64.94 377.63 -0.32 -65.25 By element: Atomic # 1 Polarization: 36.29 SS G_CDS: 0.31 Total: 36.61 kcal Atomic # 6 Polarization: -77.58 SS G_CDS: 4.47 Total: -73.12 kcal Atomic # 7 Polarization: -70.11 SS G_CDS: -1.04 Total: -71.15 kcal Atomic # 8 Polarization: -94.84 SS G_CDS: -5.77 Total: -100.60 kcal Atomic # 14 Polarization: 35.54 SS G_CDS: 2.03 Total: 37.57 kcal Atomic # 16 Polarization: 105.76 SS G_CDS: -0.32 Total: 105.45 kcal Total: -64.94 -0.32 -65.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001771658269.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.726 kcal (2) G-P(sol) polarization free energy of solvation -64.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds