Wall clock time and date at job start Sat Apr 11 2020 06:19:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53011 * 109.47010 * 2 1 4 4 H 1.08999 * 109.47156 * 54.99881 * 3 2 1 5 5 C 1.52999 * 109.46600 * 294.99834 * 3 2 1 6 6 C 1.52997 * 109.46991 * 175.00016 * 3 2 1 7 7 H 1.09004 * 109.47212 * 65.74961 * 6 3 2 8 8 C 1.53007 * 109.46900 * 185.74728 * 6 3 2 9 9 N 1.46499 * 109.47203 * 184.03422 * 8 6 3 10 10 S 1.65596 * 120.00083 * 94.81252 * 9 8 6 11 11 O 1.42102 * 106.40536 * 309.92150 * 10 9 8 12 12 O 1.42096 * 106.40394 * 177.00035 * 10 9 8 13 13 C 1.76205 * 107.21588 * 63.45933 * 10 9 8 14 14 C 1.37633 * 120.12900 * 245.03786 * 13 10 9 15 15 C 1.38613 * 120.24750 * 179.74910 * 14 13 10 16 16 C 1.38657 * 120.50332 * 0.24964 * 15 14 13 17 17 C 1.37597 * 120.24853 * 0.02895 * 16 15 14 18 18 C 1.40703 * 120.12693 * 65.31015 * 13 10 9 19 19 C 1.41392 * 120.24155 * 359.97438 * 18 13 10 20 20 H 1.08000 * 120.00544 * 330.49742 * 19 18 13 21 21 C 1.39954 * 119.99941 * 150.49588 * 19 18 13 22 22 N 1.30820 * 119.99578 * 348.61349 * 21 19 18 23 23 Si 1.86790 * 120.00183 * 168.60642 * 21 19 18 24 24 H 1.48500 * 109.47284 * 65.00288 * 23 21 19 25 25 H 1.48498 * 109.47512 * 185.00357 * 23 21 19 26 26 H 1.48506 * 109.47281 * 305.00478 * 23 21 19 27 27 O 1.42898 * 109.47438 * 305.75224 * 6 3 2 28 28 C 1.42894 * 114.00395 * 136.57586 * 27 6 3 29 29 H 1.08995 * 109.47392 * 60.00474 * 1 2 3 30 30 H 1.08997 * 109.46829 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47045 * 300.00081 * 1 2 3 32 32 H 1.08996 * 109.47673 * 240.00197 * 2 1 3 33 33 H 1.09002 * 109.47620 * 119.99850 * 2 1 3 34 34 H 1.09005 * 109.46937 * 62.61441 * 5 3 2 35 35 H 1.08999 * 109.46705 * 182.61065 * 5 3 2 36 36 H 1.08996 * 109.47389 * 302.61376 * 5 3 2 37 37 H 1.08998 * 109.46729 * 64.03879 * 8 6 3 38 38 H 1.08997 * 109.47049 * 304.03574 * 8 6 3 39 39 H 0.97002 * 119.99859 * 274.81987 * 9 8 6 40 40 H 1.08005 * 119.87868 * 0.02562 * 14 13 10 41 41 H 1.08002 * 119.74906 * 180.23233 * 15 14 13 42 42 H 1.07998 * 119.87791 * 179.97438 * 16 15 14 43 43 H 1.07992 * 120.12942 * 179.97438 * 17 16 15 44 44 H 0.97002 * 120.00196 * 180.02562 * 22 21 19 45 45 H 1.09007 * 109.46941 * 305.24164 * 28 27 6 46 46 H 1.08999 * 109.47252 * 65.23645 * 28 27 6 47 47 H 1.08996 * 109.47389 * 185.23985 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6054 1.9816 0.8418 5 6 1.6352 2.1265 -1.3074 6 6 3.5648 1.4444 0.1257 7 1 4.0034 0.9957 -0.7656 8 6 4.0629 2.8840 0.2698 9 7 5.5277 2.8938 0.2934 10 16 6.3766 3.1540 -1.1044 11 8 5.8412 2.2608 -2.0712 12 8 7.7503 3.1744 -0.7417 13 6 5.9839 4.7801 -1.6580 14 6 5.3099 4.9621 -2.8442 15 6 4.9952 6.2399 -3.2795 16 6 5.3590 7.3483 -2.5300 17 6 6.0384 7.1904 -1.3438 18 6 6.3632 5.8977 -0.8921 19 6 7.0605 5.7231 0.3255 20 1 6.9064 4.8300 0.9129 21 6 7.9506 6.7077 0.7696 22 7 8.3084 7.6762 -0.0337 23 14 8.6273 6.6389 2.5092 24 1 9.4731 5.4281 2.6639 25 1 9.4451 7.8506 2.7705 26 1 7.5018 6.5833 3.4764 27 8 3.9488 0.6899 1.2769 28 6 5.0593 -0.1819 1.0566 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 1.8934 -0.5138 0.8900 34 1 0.5480 2.1666 -1.3750 35 1 2.0380 3.1391 -1.3275 36 1 2.0311 1.5611 -2.1510 37 1 3.6817 3.3090 1.1983 38 1 3.7091 3.4770 -0.5735 39 1 6.0003 2.7479 1.1279 40 1 5.0212 4.1059 -3.4358 41 1 4.4629 6.3733 -4.2096 42 1 5.1091 8.3393 -2.8789 43 1 6.3211 8.0550 -0.7618 44 1 8.9256 8.3584 0.2738 45 1 4.8460 -0.8353 0.2105 46 1 5.9493 0.4101 0.8431 47 1 5.2297 -0.7856 1.9480 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601425708.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:53 Heat of formation + Delta-G solvation = -124.319018 kcal Electronic energy + Delta-G solvation = -29412.062502 eV Core-core repulsion = 25492.910481 eV Total energy + Delta-G solvation = -3919.152021 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -38.92166 -37.62162 -36.24067 -35.59220 -34.86213 -34.36960 -33.87254 -30.50227 -30.23333 -29.59239 -27.68246 -25.84839 -25.54145 -24.80092 -21.76977 -21.67345 -21.14865 -19.96777 -18.73274 -17.72679 -17.13306 -16.44567 -16.21079 -15.90749 -15.41603 -15.24676 -14.76516 -14.72348 -14.34175 -14.04735 -13.55921 -13.38477 -13.32509 -13.18275 -12.77709 -12.62666 -12.50673 -11.99707 -11.84350 -11.78995 -11.67393 -11.54712 -11.34314 -11.29671 -11.17267 -11.09107 -11.08797 -11.02293 -10.74001 -10.57218 -10.54711 -10.53445 -10.35970 -10.02343 -9.93076 -9.44585 -9.30269 -8.58439 -8.06700 -7.62855 -7.04680 -4.78510 1.50623 2.30959 2.71887 2.95727 2.98967 3.11189 3.76863 3.86751 3.90306 4.39189 4.65354 4.77612 4.92941 5.04080 5.23462 5.32713 5.34505 5.38589 5.49140 5.54302 5.56952 5.57156 5.60461 5.70806 5.74146 5.80874 5.94029 6.00004 6.01526 6.05943 6.11698 6.19772 6.20776 6.34124 6.40587 6.41017 6.43883 6.75751 6.91597 7.05475 7.27789 7.34691 7.45728 7.52918 7.64758 7.77639 7.86662 8.25720 8.48128 8.61814 9.88913 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012579 B = 0.004345 C = 0.003792 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2225.313826 B = 6442.611232 C = 7382.341680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.117 4.117 3 C -0.091 4.091 4 H 0.078 0.922 5 C -0.155 4.155 6 C 0.067 3.933 7 H 0.079 0.921 8 C 0.114 3.886 9 N -1.119 6.119 10 S 2.695 3.305 11 O -0.998 6.998 12 O -0.965 6.965 13 C -0.776 4.776 14 C -0.004 4.004 15 C -0.249 4.249 16 C -0.076 4.076 17 C -0.156 4.156 18 C 0.188 3.812 19 C -0.447 4.447 20 H 0.087 0.913 21 C 0.081 3.919 22 N -0.777 5.777 23 Si 0.914 3.086 24 H -0.257 1.257 25 H -0.274 1.274 26 H -0.258 1.258 27 O -0.379 6.379 28 C 0.031 3.969 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.059 0.941 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.412 0.588 40 H 0.108 0.892 41 H 0.095 0.905 42 H 0.094 0.906 43 H 0.123 0.877 44 H 0.288 0.712 45 H 0.040 0.960 46 H 0.041 0.959 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.849 -8.294 2.930 13.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.154 4.154 3 C -0.110 4.110 4 H 0.096 0.904 5 C -0.212 4.212 6 C 0.007 3.993 7 H 0.097 0.903 8 C -0.014 4.014 9 N -0.874 5.874 10 S 2.792 3.208 11 O -0.988 6.988 12 O -0.956 6.956 13 C -0.872 4.872 14 C -0.024 4.024 15 C -0.270 4.270 16 C -0.095 4.095 17 C -0.176 4.176 18 C 0.183 3.817 19 C -0.475 4.475 20 H 0.105 0.895 21 C -0.140 4.140 22 N -0.400 5.400 23 Si 0.737 3.263 24 H -0.181 1.181 25 H -0.199 1.199 26 H -0.182 1.182 27 O -0.298 6.298 28 C -0.066 4.066 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.079 0.921 35 H 0.082 0.918 36 H 0.078 0.922 37 H 0.101 0.899 38 H 0.106 0.894 39 H 0.245 0.755 40 H 0.126 0.874 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.141 0.859 44 H 0.099 0.901 45 H 0.059 0.941 46 H 0.060 0.940 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.303 -8.677 2.544 12.973 hybrid contribution 0.481 0.813 0.736 1.197 sum -8.821 -7.864 3.280 12.264 Atomic orbital electron populations 1.21811 0.96128 1.01182 1.01776 1.21496 0.95446 0.96225 1.02281 1.21283 0.93744 0.97031 0.98971 0.90407 1.21970 1.01390 1.01115 0.96705 1.22893 0.94506 0.92608 0.89260 0.90332 1.21603 0.79975 0.95830 1.03999 1.55602 1.14968 1.89496 1.27322 1.01269 0.72911 0.74519 0.72053 1.93444 1.80751 1.64288 1.60312 1.93546 1.31385 1.87966 1.82670 1.29840 1.29450 1.19200 1.08673 1.20252 0.92501 0.96678 0.92964 1.20490 1.11508 0.92889 1.02075 1.20906 0.96809 0.96741 0.95081 1.21482 1.00907 0.97925 0.97298 1.16994 0.84799 0.90205 0.89680 1.19819 1.19069 1.04278 1.04338 0.89530 1.25942 0.94932 0.93471 0.99692 1.69766 1.24346 1.10044 1.35880 0.86231 0.79834 0.79318 0.80906 1.18119 1.19886 1.18246 1.87809 1.49579 1.57099 1.35268 1.22819 0.89334 0.93186 1.01279 0.92594 0.93181 0.92857 0.92370 0.91204 0.92103 0.91848 0.92154 0.89909 0.89351 0.75481 0.87428 0.88713 0.88783 0.85886 0.90057 0.94137 0.94031 0.90077 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.67 37.16 0.36 -1.00 16 2 C -0.12 -1.24 5.28 -26.73 -0.14 -1.38 16 3 C -0.09 -1.06 2.16 -90.62 -0.20 -1.26 16 4 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 5 C -0.15 -1.75 8.71 37.16 0.32 -1.43 16 6 C 0.07 0.93 2.03 -26.73 -0.05 0.88 16 7 H 0.08 1.21 7.02 -51.93 -0.36 0.84 16 8 C 0.11 1.72 5.74 -4.04 -0.02 1.70 16 9 N -1.12 -19.42 4.06 -10.61 -0.04 -19.46 16 10 S 2.70 58.11 4.88 -107.50 -0.52 57.59 16 11 O -1.00 -21.77 16.20 -57.17 -0.93 -22.70 16 12 O -0.97 -24.00 16.56 -57.17 -0.95 -24.95 16 13 C -0.78 -18.27 5.69 -38.87 -0.22 -18.49 16 14 C 0.00 -0.09 9.53 -39.66 -0.38 -0.47 16 15 C -0.25 -5.33 10.05 -39.29 -0.39 -5.73 16 16 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 17 C -0.16 -3.82 8.65 -38.87 -0.34 -4.15 16 18 C 0.19 4.73 5.53 -106.82 -0.59 4.14 16 19 C -0.45 -11.13 7.60 -37.74 -0.29 -11.42 16 20 H 0.09 2.01 5.84 -52.49 -0.31 1.70 16 21 C 0.08 1.94 5.23 -17.34 -0.09 1.85 16 22 N -0.78 -19.07 10.95 55.55 0.61 -18.47 16 23 Si 0.91 17.93 29.57 -169.99 -5.03 12.91 16 24 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 25 H -0.27 -5.17 7.11 56.52 0.40 -4.77 16 26 H -0.26 -4.86 7.11 56.52 0.40 -4.46 16 27 O -0.38 -5.22 9.28 -35.23 -0.33 -5.54 16 28 C 0.03 0.38 10.71 101.05 1.08 1.46 16 29 H 0.06 0.48 6.62 -51.93 -0.34 0.13 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.07 0.78 7.37 -51.93 -0.38 0.39 16 34 H 0.06 0.58 6.69 -51.93 -0.35 0.24 16 35 H 0.06 0.75 6.39 -51.93 -0.33 0.42 16 36 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 1.36 5.99 -51.93 -0.31 1.05 16 39 H 0.41 6.55 8.67 -34.47 -0.30 6.25 16 40 H 0.11 2.19 7.33 -52.48 -0.38 1.81 16 41 H 0.09 1.76 8.06 -52.49 -0.42 1.34 16 42 H 0.09 1.80 8.06 -52.49 -0.42 1.38 16 43 H 0.12 3.03 6.33 -52.49 -0.33 2.70 16 44 H 0.29 6.38 8.30 -40.82 -0.34 6.04 16 45 H 0.04 0.47 8.02 -51.93 -0.42 0.06 16 46 H 0.04 0.55 7.35 -51.93 -0.38 0.17 16 47 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 384.47 15.07 5.79 5.79 Total: -1.00 -29.69 384.47 -9.88 -39.57 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -7.14 Total: 12.64 kcal Atomic # 6 Polarization: -36.03 SS G_CDS: -1.35 Total: -37.38 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.56 Total: -37.93 kcal Atomic # 8 Polarization: -50.99 SS G_CDS: -2.20 Total: -53.19 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.91 kcal Atomic # 16 Polarization: 58.11 SS G_CDS: -0.52 Total: 57.59 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.69 -9.88 -39.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601425708.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.749 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds