Wall clock time and date at job start Sat Apr 11 2020 06:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99810 * 2 1 4 4 C 1.52997 * 109.47127 * 84.99630 * 3 2 1 5 5 C 1.53001 * 109.47353 * 304.99645 * 4 3 2 6 6 O 1.42894 * 109.47499 * 65.00086 * 4 3 2 7 7 C 1.50706 * 109.46831 * 185.00335 * 4 3 2 8 8 C 1.38237 * 119.99744 * 210.00383 * 7 4 3 9 9 C 1.38235 * 119.99712 * 180.02562 * 8 7 4 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00223 * 30.01594 * 7 4 3 13 13 S 1.65598 * 120.00175 * 179.97438 * 2 1 3 14 14 O 1.42098 * 104.27835 * 26.07381 * 13 2 1 15 15 O 1.42101 * 104.27722 * 153.93454 * 13 2 1 16 16 C 1.81400 * 104.45135 * 270.00268 * 13 2 1 17 17 C 1.53001 * 109.47384 * 180.02562 * 16 13 2 18 18 C 1.53002 * 109.47219 * 179.97438 * 17 16 13 19 19 C 1.50695 * 109.47189 * 179.97438 * 18 17 16 20 20 H 1.08005 * 120.00134 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00248 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99921 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00283 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46767 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47195 * 119.99505 * 23 21 19 26 26 H 1.48498 * 109.47069 * 240.00190 * 23 21 19 27 27 H 1.09000 * 109.46733 * 90.00968 * 1 2 3 28 28 H 1.09002 * 109.46762 * 209.99984 * 1 2 3 29 29 H 1.08998 * 109.47483 * 330.00114 * 1 2 3 30 30 H 1.09007 * 109.46653 * 324.99724 * 3 2 1 31 31 H 1.08997 * 109.46689 * 204.99691 * 3 2 1 32 32 H 1.08993 * 109.47154 * 300.00362 * 5 4 3 33 33 H 1.09001 * 109.46664 * 60.00290 * 5 4 3 34 34 H 1.08998 * 109.47218 * 179.97438 * 5 4 3 35 35 H 0.96705 * 113.99982 * 59.99764 * 6 4 3 36 36 H 1.08005 * 120.00088 * 359.97438 * 8 7 4 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07998 * 119.99975 * 0.02562 * 12 7 4 41 41 H 1.09006 * 109.47232 * 300.00035 * 16 13 2 42 42 H 1.09008 * 109.47463 * 59.99783 * 16 13 2 43 43 H 1.09001 * 109.47223 * 299.99816 * 17 16 13 44 44 H 1.08999 * 109.47104 * 60.00051 * 17 16 13 45 45 H 1.08992 * 109.47264 * 300.00080 * 18 17 16 46 46 H 1.09008 * 109.46882 * 59.99837 * 18 17 16 47 47 H 0.96999 * 120.00110 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 1.4370 5 6 0.9619 1.8666 2.0877 6 8 3.1597 0.8658 2.1800 7 6 2.9874 3.1359 1.4279 8 6 3.7715 3.5369 2.4934 9 6 4.3617 4.7869 2.4853 10 6 4.1687 5.6355 1.4113 11 6 3.3807 5.2364 0.3480 12 6 2.7938 3.9848 0.3542 13 16 2.2931 -1.4341 0.0006 14 8 1.3971 -2.3564 -0.6042 15 8 3.5396 -1.1193 -0.6046 16 6 2.5194 -1.8254 1.7574 17 6 3.2820 -3.1449 1.8920 18 6 3.4734 -3.4746 3.3737 19 6 4.2240 -4.7746 3.5062 20 1 4.5340 -5.3117 2.6220 21 6 4.5151 -5.2783 4.7562 22 7 4.1382 -4.6240 5.8330 23 14 5.4462 -6.8894 4.9205 24 1 5.7540 -7.4231 3.5693 25 1 6.7120 -6.6563 5.6613 26 1 4.6123 -7.8697 5.6613 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6500 2.0043 -0.5895 31 1 3.1858 1.1177 -0.4343 32 1 0.3394 2.5589 1.5210 33 1 0.4962 0.8812 2.0942 34 1 1.0660 2.2257 3.1116 35 1 4.0521 0.7572 1.8236 36 1 3.9224 2.8739 3.3326 37 1 4.9740 5.1004 3.3179 38 1 4.6302 6.6119 1.4048 39 1 3.2263 5.9010 -0.4892 40 1 2.1807 3.6717 -0.4779 41 1 3.0866 -1.0278 2.2372 42 1 1.5451 -1.9178 2.2376 43 1 2.7152 -3.9428 1.4122 44 1 4.2562 -3.0521 1.4120 45 1 4.0404 -2.6768 3.8532 46 1 2.4993 -3.5673 3.8541 47 1 4.3433 -4.9782 6.7124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000819913491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:36 Heat of formation + Delta-G solvation = -96.623408 kcal Electronic energy + Delta-G solvation = -28698.552940 eV Core-core repulsion = 24780.601891 eV Total energy + Delta-G solvation = -3917.951050 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.32987 -38.00425 -36.89754 -35.80000 -35.49212 -34.52726 -32.61000 -32.09102 -31.13694 -29.50420 -28.36879 -27.69855 -24.92701 -23.58193 -23.44066 -22.52054 -20.63883 -20.44534 -18.78770 -17.95269 -17.46026 -16.87807 -16.51133 -16.14144 -15.86563 -15.58433 -15.12635 -14.84779 -14.54075 -14.44843 -14.39180 -13.97233 -13.58432 -13.52945 -13.22007 -12.83363 -12.63770 -12.53469 -12.31534 -12.22567 -12.08997 -11.96868 -11.86341 -11.65417 -11.59197 -11.37957 -11.25856 -11.12339 -11.02767 -10.90164 -10.82640 -10.53547 -10.23878 -9.83541 -9.41690 -9.17825 -9.17543 -9.03659 -8.79119 -8.36577 -6.01251 -4.03943 0.52917 1.04091 1.14735 2.74276 3.31648 3.39082 3.44130 3.49882 3.84535 4.06453 4.24602 4.39667 4.45778 4.49442 4.55113 4.73484 4.75612 4.82850 4.91791 5.16526 5.23994 5.31066 5.33083 5.33437 5.35043 5.44119 5.50026 5.55275 5.60129 5.64978 5.73886 5.79358 5.81418 6.00258 6.13895 6.18483 6.26715 6.29156 6.34898 6.47269 6.65263 6.72775 6.96036 7.40190 7.64833 7.75539 7.97828 8.38640 9.02824 9.60391 11.09847 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.003148 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.366878 B = 8891.921068 C =10333.103219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -1.000 6.000 3 C 0.091 3.909 4 C 0.150 3.850 5 C -0.138 4.138 6 O -0.547 6.547 7 C -0.113 4.113 8 C -0.099 4.099 9 C -0.120 4.120 10 C -0.120 4.120 11 C -0.122 4.122 12 C -0.115 4.115 13 S 2.594 3.406 14 O -0.965 6.965 15 O -0.966 6.966 16 C -0.610 4.610 17 C -0.105 4.105 18 C 0.033 3.967 19 C -0.524 4.524 20 H 0.057 0.943 21 C 0.057 3.943 22 N -0.894 5.894 23 Si 0.892 3.108 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.056 0.944 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.101 0.899 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.066 0.934 35 H 0.383 0.617 36 H 0.133 0.867 37 H 0.123 0.877 38 H 0.120 0.880 39 H 0.121 0.879 40 H 0.125 0.875 41 H 0.155 0.845 42 H 0.122 0.878 43 H 0.060 0.940 44 H 0.062 0.938 45 H 0.022 0.978 46 H 0.019 0.981 47 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.137 22.528 -10.269 25.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.835 5.835 3 C -0.035 4.035 4 C 0.108 3.892 5 C -0.195 4.195 6 O -0.354 6.354 7 C -0.114 4.114 8 C -0.117 4.117 9 C -0.138 4.138 10 C -0.138 4.138 11 C -0.140 4.140 12 C -0.133 4.133 13 S 2.692 3.308 14 O -0.955 6.955 15 O -0.957 6.957 16 C -0.742 4.742 17 C -0.144 4.144 18 C -0.005 4.005 19 C -0.563 4.563 20 H 0.076 0.924 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.720 3.280 24 H -0.196 1.196 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.074 0.926 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.119 0.881 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.085 0.915 35 H 0.233 0.767 36 H 0.151 0.849 37 H 0.141 0.859 38 H 0.138 0.862 39 H 0.139 0.861 40 H 0.143 0.857 41 H 0.172 0.828 42 H 0.141 0.859 43 H 0.079 0.921 44 H 0.081 0.919 45 H 0.040 0.960 46 H 0.037 0.963 47 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -6.454 22.027 -10.563 25.267 hybrid contribution 0.863 -0.484 0.597 1.156 sum -5.591 21.543 -9.966 24.386 Atomic orbital electron populations 1.21668 0.78664 1.03396 1.02228 1.57440 1.14872 1.20972 1.90183 1.22149 0.98901 0.86285 0.96174 1.20559 0.91754 0.85125 0.91763 1.21909 0.93173 1.03141 1.01262 1.86593 1.28421 1.63811 1.56604 1.20424 0.99112 0.96603 0.95224 1.21113 0.96107 0.96224 0.98234 1.21208 0.99840 0.94230 0.98539 1.21201 0.98704 0.99707 0.94207 1.21129 0.97897 0.96312 0.98635 1.21117 1.00201 0.94117 0.97886 1.05590 0.73610 0.72654 0.78983 1.93553 1.64799 1.62040 1.75123 1.93524 1.44002 1.82915 1.75227 1.30792 1.11067 1.10045 1.22326 1.21484 0.97981 0.90863 1.04093 1.19029 0.97315 0.96603 0.87555 1.21317 1.36024 1.06630 0.92311 0.92434 1.25015 0.95973 0.97460 0.95940 1.69973 1.46841 1.38875 0.97676 0.86531 0.79611 0.83663 0.78202 1.19635 1.20973 1.20990 0.92579 0.90847 0.90445 0.89062 0.88108 0.91164 0.90407 0.91534 0.76737 0.84938 0.85946 0.86211 0.86072 0.85745 0.82751 0.85912 0.92121 0.91897 0.95977 0.96251 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.78 8.95 59.85 0.54 1.31 16 2 N -1.00 -11.24 2.79 -121.75 -0.34 -11.58 16 3 C 0.09 0.86 4.41 -4.04 -0.02 0.84 16 4 C 0.15 1.40 1.01 -91.77 -0.09 1.31 16 5 C -0.14 -1.19 7.36 37.16 0.27 -0.92 16 6 O -0.55 -6.03 8.36 -35.23 -0.29 -6.32 16 7 C -0.11 -1.01 4.81 -104.62 -0.50 -1.52 16 8 C -0.10 -0.93 9.35 -39.58 -0.37 -1.30 16 9 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 10 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 11 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 12 C -0.12 -0.92 9.14 -39.58 -0.36 -1.28 16 13 S 2.59 39.92 5.25 -107.50 -0.56 39.36 16 14 O -0.96 -17.68 17.09 -57.54 -0.98 -18.67 16 15 O -0.97 -16.82 16.53 -57.54 -0.95 -17.77 16 16 C -0.61 -9.90 5.83 37.16 0.22 -9.69 16 17 C -0.10 -2.18 5.16 -26.73 -0.14 -2.32 16 18 C 0.03 0.86 4.97 -27.88 -0.14 0.72 16 19 C -0.52 -14.96 9.11 -34.44 -0.31 -15.28 16 20 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 21 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.81 13.29 55.43 0.74 -26.08 16 23 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.68 7.79 -51.93 -0.40 0.28 16 29 H 0.08 0.51 5.42 -51.93 -0.28 0.22 16 30 H 0.09 0.65 6.18 -51.93 -0.32 0.32 16 31 H 0.10 1.04 6.82 -51.93 -0.35 0.69 16 32 H 0.07 0.47 7.77 -51.93 -0.40 0.07 16 33 H 0.08 0.69 5.79 -51.93 -0.30 0.39 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.38 3.63 8.94 45.56 0.41 4.03 16 36 H 0.13 1.27 7.49 -52.48 -0.39 0.88 16 37 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 38 H 0.12 0.69 8.06 -52.49 -0.42 0.27 16 39 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.12 0.77 6.05 -52.49 -0.32 0.45 16 41 H 0.15 2.34 4.71 -51.92 -0.24 2.09 16 42 H 0.12 1.85 8.14 -51.92 -0.42 1.43 16 43 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 44 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 45 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 384.01 15.07 5.79 5.79 Total: -1.00 -35.71 384.01 -10.21 -45.92 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.38 Total: 3.19 kcal Atomic # 6 Polarization: -28.41 SS G_CDS: -2.20 Total: -30.61 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.40 Total: -37.66 kcal Atomic # 8 Polarization: -40.53 SS G_CDS: -2.23 Total: -42.76 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Atomic # 16 Polarization: 39.92 SS G_CDS: -0.56 Total: 39.36 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.71 -10.21 -45.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819913491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.706 kcal (2) G-P(sol) polarization free energy of solvation -35.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds