Wall clock time and date at job start Sat Apr 11 2020 06:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46503 * 119.99810 * 2 1 4 4 C 1.52997 * 109.47127 * 84.99630 * 3 2 1 5 5 C 1.53001 * 109.47353 * 304.99645 * 4 3 2 6 6 O 1.42894 * 109.47499 * 65.00086 * 4 3 2 7 7 C 1.50706 * 109.46831 * 185.00335 * 4 3 2 8 8 C 1.38237 * 119.99744 * 210.00383 * 7 4 3 9 9 C 1.38235 * 119.99712 * 180.02562 * 8 7 4 10 10 C 1.38234 * 120.00220 * 359.94731 * 9 8 7 11 11 C 1.38233 * 120.00037 * 0.28719 * 10 9 8 12 12 C 1.38234 * 120.00223 * 30.01594 * 7 4 3 13 13 S 1.65598 * 120.00175 * 179.97438 * 2 1 3 14 14 O 1.42098 * 104.27835 * 26.07381 * 13 2 1 15 15 O 1.42101 * 104.27722 * 153.93454 * 13 2 1 16 16 C 1.81400 * 104.45135 * 270.00268 * 13 2 1 17 17 C 1.53001 * 109.47384 * 180.02562 * 16 13 2 18 18 C 1.53002 * 109.47219 * 179.97438 * 17 16 13 19 19 C 1.50695 * 109.47189 * 179.97438 * 18 17 16 20 20 H 1.08005 * 120.00134 * 0.02562 * 19 18 17 21 21 C 1.37878 * 120.00248 * 180.02562 * 19 18 17 22 22 N 1.31512 * 119.99921 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 120.00283 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.46767 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47195 * 119.99505 * 23 21 19 26 26 H 1.48498 * 109.47069 * 240.00190 * 23 21 19 27 27 H 1.09000 * 109.46733 * 90.00968 * 1 2 3 28 28 H 1.09002 * 109.46762 * 209.99984 * 1 2 3 29 29 H 1.08998 * 109.47483 * 330.00114 * 1 2 3 30 30 H 1.09007 * 109.46653 * 324.99724 * 3 2 1 31 31 H 1.08997 * 109.46689 * 204.99691 * 3 2 1 32 32 H 1.08993 * 109.47154 * 300.00362 * 5 4 3 33 33 H 1.09001 * 109.46664 * 60.00290 * 5 4 3 34 34 H 1.08998 * 109.47218 * 179.97438 * 5 4 3 35 35 H 0.96705 * 113.99982 * 59.99764 * 6 4 3 36 36 H 1.08005 * 120.00088 * 359.97438 * 8 7 4 37 37 H 1.07999 * 119.99770 * 179.97438 * 9 8 7 38 38 H 1.08002 * 119.99744 * 180.02562 * 10 9 8 39 39 H 1.07998 * 120.00395 * 179.72811 * 11 10 9 40 40 H 1.07998 * 119.99975 * 0.02562 * 12 7 4 41 41 H 1.09006 * 109.47232 * 300.00035 * 16 13 2 42 42 H 1.09008 * 109.47463 * 59.99783 * 16 13 2 43 43 H 1.09001 * 109.47223 * 299.99816 * 17 16 13 44 44 H 1.08999 * 109.47104 * 60.00051 * 17 16 13 45 45 H 1.08992 * 109.47264 * 300.00080 * 18 17 16 46 46 H 1.09008 * 109.46882 * 59.99837 * 18 17 16 47 47 H 0.96999 * 120.00110 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.3435 1.7733 1.4370 5 6 0.9619 1.8666 2.0877 6 8 3.1597 0.8658 2.1800 7 6 2.9874 3.1359 1.4279 8 6 3.7715 3.5369 2.4934 9 6 4.3617 4.7869 2.4853 10 6 4.1687 5.6355 1.4113 11 6 3.3807 5.2364 0.3480 12 6 2.7938 3.9848 0.3542 13 16 2.2931 -1.4341 0.0006 14 8 1.3971 -2.3564 -0.6042 15 8 3.5396 -1.1193 -0.6046 16 6 2.5194 -1.8254 1.7574 17 6 3.2820 -3.1449 1.8920 18 6 3.4734 -3.4746 3.3737 19 6 4.2240 -4.7746 3.5062 20 1 4.5340 -5.3117 2.6220 21 6 4.5151 -5.2783 4.7562 22 7 4.1382 -4.6240 5.8330 23 14 5.4462 -6.8894 4.9205 24 1 5.7540 -7.4231 3.5693 25 1 6.7120 -6.6563 5.6613 26 1 4.6123 -7.8697 5.6613 27 1 -0.3633 -0.0002 -1.0277 28 1 -0.3633 -0.8900 0.5139 29 1 -0.3634 0.8900 0.5138 30 1 1.6500 2.0043 -0.5895 31 1 3.1858 1.1177 -0.4343 32 1 0.3394 2.5589 1.5210 33 1 0.4962 0.8812 2.0942 34 1 1.0660 2.2257 3.1116 35 1 4.0521 0.7572 1.8236 36 1 3.9224 2.8739 3.3326 37 1 4.9740 5.1004 3.3179 38 1 4.6302 6.6119 1.4048 39 1 3.2263 5.9010 -0.4892 40 1 2.1807 3.6717 -0.4779 41 1 3.0866 -1.0278 2.2372 42 1 1.5451 -1.9178 2.2376 43 1 2.7152 -3.9428 1.4122 44 1 4.2562 -3.0521 1.4120 45 1 4.0404 -2.6768 3.8532 46 1 2.4993 -3.5673 3.8541 47 1 4.3433 -4.9782 6.7124 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819913491.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:35 Heat of formation + Delta-G solvation = -121.368416 kcal Electronic energy + Delta-G solvation = -28699.625964 eV Core-core repulsion = 24780.601891 eV Total energy + Delta-G solvation = -3919.024074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.01115 -38.72453 -38.21359 -37.08028 -36.59160 -36.22642 -34.13521 -33.31181 -31.73869 -30.15914 -29.60921 -29.09249 -25.90681 -25.35426 -24.10386 -23.19515 -22.26928 -21.32676 -19.91152 -18.88415 -18.57487 -18.41274 -17.58855 -17.30116 -17.07644 -16.52966 -16.38702 -16.09250 -15.75264 -15.44435 -15.31216 -14.92303 -14.49790 -14.29845 -14.21120 -14.05858 -14.02079 -13.53899 -13.49748 -13.39357 -13.27336 -13.17976 -12.98411 -12.86375 -12.83034 -12.65203 -12.53294 -12.46349 -12.24317 -12.12286 -12.00274 -11.72117 -11.69111 -11.42764 -11.23288 -10.91119 -10.57651 -9.89796 -9.78589 -9.59100 -8.21903 -6.33222 -0.71960 0.42812 0.53546 1.39239 1.39500 1.53180 1.66838 2.39849 2.80279 2.88568 3.05113 3.11170 3.22890 3.55769 3.72652 3.80040 3.90293 4.03982 4.13469 4.17422 4.20240 4.32612 4.44862 4.52754 4.60659 4.68135 4.70031 4.72868 4.78935 4.90510 4.92259 4.96861 5.00905 5.10396 5.12188 5.20007 5.24162 5.33650 5.47119 5.55409 5.60541 5.65262 5.66922 5.69632 5.80912 6.13741 6.20633 6.65300 6.82697 7.35961 8.89712 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012568 B = 0.003148 C = 0.002709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2227.366878 B = 8891.921068 C =10333.103219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.989 5.989 3 C 0.088 3.912 4 C 0.151 3.849 5 C -0.141 4.141 6 O -0.566 6.566 7 C -0.119 4.119 8 C -0.118 4.118 9 C -0.132 4.132 10 C -0.126 4.126 11 C -0.125 4.125 12 C -0.119 4.119 13 S 2.620 3.380 14 O -0.993 6.993 15 O -0.986 6.986 16 C -0.613 4.613 17 C -0.103 4.103 18 C 0.037 3.963 19 C -0.551 4.551 20 H 0.059 0.941 21 C 0.002 3.998 22 N -0.929 5.929 23 Si 0.963 3.037 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.276 1.276 27 H 0.067 0.933 28 H 0.068 0.932 29 H 0.108 0.892 30 H 0.125 0.875 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.054 0.946 35 H 0.386 0.614 36 H 0.120 0.880 37 H 0.131 0.869 38 H 0.139 0.861 39 H 0.145 0.855 40 H 0.146 0.854 41 H 0.164 0.836 42 H 0.132 0.868 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.002 0.998 46 H -0.002 1.002 47 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.648 23.837 -11.739 27.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.827 5.827 3 C -0.038 4.038 4 C 0.109 3.891 5 C -0.198 4.198 6 O -0.374 6.374 7 C -0.120 4.120 8 C -0.136 4.136 9 C -0.150 4.150 10 C -0.144 4.144 11 C -0.143 4.143 12 C -0.137 4.137 13 S 2.716 3.284 14 O -0.983 6.983 15 O -0.977 6.977 16 C -0.744 4.744 17 C -0.142 4.142 18 C -0.002 4.002 19 C -0.589 4.589 20 H 0.077 0.923 21 C -0.196 4.196 22 N -0.569 5.569 23 Si 0.788 3.212 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.202 1.202 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.126 0.874 30 H 0.143 0.857 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.093 0.907 34 H 0.073 0.927 35 H 0.236 0.764 36 H 0.138 0.862 37 H 0.149 0.851 38 H 0.157 0.843 39 H 0.162 0.838 40 H 0.163 0.837 41 H 0.182 0.818 42 H 0.150 0.850 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.021 0.979 46 H 0.016 0.984 47 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -6.962 23.328 -12.026 27.153 hybrid contribution 0.989 -0.761 1.059 1.636 sum -5.973 22.567 -10.967 25.792 Atomic orbital electron populations 1.21982 0.76883 1.04772 1.03433 1.57098 1.15849 1.20080 1.89662 1.22376 0.98914 0.85826 0.96669 1.20634 0.91830 0.85087 0.91512 1.21985 0.93146 1.03570 1.01068 1.86553 1.28917 1.64491 1.57459 1.20398 0.99398 0.96564 0.95650 1.21137 0.97263 0.96741 0.98455 1.21401 1.00066 0.94134 0.99404 1.21500 0.98608 1.00379 0.93899 1.21472 0.97162 0.96507 0.99133 1.21375 1.00308 0.94094 0.97922 1.04558 0.73015 0.73118 0.77668 1.93513 1.65481 1.63964 1.75345 1.93492 1.45442 1.83458 1.75271 1.30793 1.11041 1.07853 1.24678 1.21287 0.98953 0.93439 1.00557 1.18895 0.95424 0.95234 0.90618 1.21773 1.36581 1.07862 0.92719 0.92267 1.25946 0.96824 1.01274 0.95543 1.70090 1.47865 1.40711 0.98272 0.85425 0.78298 0.78982 0.78527 1.18775 1.20129 1.20203 0.91485 0.91286 0.87410 0.85673 0.88914 0.88645 0.90683 0.92708 0.76370 0.86222 0.85134 0.84309 0.83759 0.83666 0.81838 0.84984 0.92296 0.91719 0.97920 0.98379 0.92668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.15 8.95 127.77 1.14 2.29 16 2 N -0.99 -20.41 2.79 -539.11 -1.50 -21.92 16 3 C 0.09 1.46 4.41 86.38 0.38 1.84 16 4 C 0.15 2.63 1.01 -11.54 -0.01 2.62 16 5 C -0.14 -2.19 7.36 71.98 0.53 -1.66 16 6 O -0.57 -12.61 8.36 -148.98 -1.25 -13.85 16 7 C -0.12 -1.99 4.81 -19.86 -0.10 -2.09 16 8 C -0.12 -2.21 9.35 22.27 0.21 -2.00 16 9 C -0.13 -2.16 10.05 22.27 0.22 -1.93 16 10 C -0.13 -1.71 10.05 22.27 0.22 -1.49 16 11 C -0.12 -1.55 10.05 22.27 0.22 -1.33 16 12 C -0.12 -1.58 9.14 22.27 0.20 -1.38 16 13 S 2.62 79.16 5.25 -56.49 -0.30 78.87 16 14 O -0.99 -35.83 17.09 -127.65 -2.18 -38.01 16 15 O -0.99 -33.85 16.53 -127.65 -2.11 -35.96 16 16 C -0.61 -20.19 5.83 71.98 0.42 -19.77 16 17 C -0.10 -4.41 5.16 30.60 0.16 -4.26 16 18 C 0.04 1.96 4.97 29.85 0.15 2.11 16 19 C -0.55 -32.15 9.11 25.60 0.23 -31.92 16 20 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 21 C 0.00 0.13 5.46 84.66 0.46 0.59 16 22 N -0.93 -56.79 13.29 21.45 0.28 -56.50 16 23 Si 0.96 44.95 29.54 68.60 2.03 46.98 16 24 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 25 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 26 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.07 1.17 7.79 -2.39 -0.02 1.15 16 29 H 0.11 1.03 5.42 -2.39 -0.01 1.02 16 30 H 0.13 1.27 6.18 -2.38 -0.01 1.25 16 31 H 0.09 1.76 6.82 -2.39 -0.02 1.74 16 32 H 0.09 0.97 7.77 -2.39 -0.02 0.96 16 33 H 0.07 1.20 5.79 -2.39 -0.01 1.19 16 34 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.39 7.63 8.94 -74.05 -0.66 6.96 16 36 H 0.12 2.45 7.49 -2.91 -0.02 2.43 16 37 H 0.13 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 39 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 40 H 0.15 1.22 6.05 -2.91 -0.02 1.21 16 41 H 0.16 5.08 4.71 -2.39 -0.01 5.07 16 42 H 0.13 4.04 8.14 -2.39 -0.02 4.02 16 43 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 44 H 0.06 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.00 -0.12 8.14 -2.38 -0.02 -0.14 16 47 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 Total: -1.00 -77.50 384.01 -0.26 -77.76 By element: Atomic # 1 Polarization: 20.69 SS G_CDS: 0.31 Total: 21.00 kcal Atomic # 6 Polarization: -62.83 SS G_CDS: 4.45 Total: -58.38 kcal Atomic # 7 Polarization: -77.20 SS G_CDS: -1.22 Total: -78.42 kcal Atomic # 8 Polarization: -82.28 SS G_CDS: -5.54 Total: -87.82 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 16 Polarization: 79.16 SS G_CDS: -0.30 Total: 78.87 kcal Total: -77.50 -0.26 -77.76 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819913491.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.604 kcal (2) G-P(sol) polarization free energy of solvation -77.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.765 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds