Wall clock time and date at job start Sat Apr 11 2020 06:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47527 * 2 1 4 4 H 1.09002 * 109.47391 * 179.58767 * 3 2 1 5 5 C 1.50705 * 109.47013 * 299.59064 * 3 2 1 6 6 H 1.07997 * 120.00225 * 119.99609 * 5 3 2 7 7 C 1.37876 * 119.99583 * 299.99785 * 5 3 2 8 8 N 1.31511 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99852 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46699 * 60.00185 * 9 7 5 11 11 H 1.48501 * 109.47055 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47107 * 300.00435 * 9 7 5 13 13 N 1.46909 * 109.47040 * 59.58424 * 3 2 1 14 14 C 1.46903 * 110.99419 * 82.18761 * 13 3 2 15 15 C 1.53007 * 109.46578 * 185.72916 * 14 13 3 16 16 C 1.53003 * 109.47138 * 304.99483 * 15 14 13 17 17 O 1.42898 * 109.47347 * 64.99863 * 15 14 13 18 18 C 1.50703 * 109.46553 * 184.99849 * 15 14 13 19 19 C 1.38224 * 120.00404 * 29.72725 * 18 15 14 20 20 C 1.38235 * 120.00329 * 179.80578 * 19 18 15 21 21 C 1.38238 * 119.99698 * 0.42167 * 20 19 18 22 22 S 1.76196 * 120.00073 * 179.78473 * 21 20 19 23 23 C 1.81401 * 104.45267 * 270.02292 * 22 21 20 24 24 O 1.42103 * 104.27799 * 26.09910 * 22 21 20 25 25 O 1.42100 * 104.27589 * 153.95109 * 22 21 20 26 26 C 1.38238 * 120.00017 * 359.80782 * 21 20 19 27 27 C 1.38236 * 119.99401 * 209.99787 * 18 15 14 28 28 H 1.09003 * 109.46439 * 56.56638 * 1 2 3 29 29 H 1.08996 * 109.47083 * 296.57495 * 1 2 3 30 30 H 1.08997 * 109.47247 * 176.56576 * 1 2 3 31 31 H 1.09006 * 109.46695 * 120.00050 * 2 1 3 32 32 H 1.09002 * 109.47236 * 239.99196 * 2 1 3 33 33 H 0.97002 * 120.00347 * 179.97438 * 8 7 5 34 34 H 1.00903 * 110.99869 * 206.13747 * 13 3 2 35 35 H 1.08994 * 109.46864 * 305.72246 * 14 13 3 36 36 H 1.08994 * 109.47486 * 65.72933 * 14 13 3 37 37 H 1.09004 * 109.46528 * 60.00489 * 16 15 14 38 38 H 1.08993 * 109.46764 * 179.97438 * 16 15 14 39 39 H 1.08998 * 109.47349 * 300.00696 * 16 15 14 40 40 H 0.96702 * 113.99922 * 59.99758 * 17 15 14 41 41 H 1.08007 * 120.00016 * 359.97438 * 19 18 15 42 42 H 1.08000 * 120.00533 * 180.20647 * 20 19 18 43 43 H 1.08994 * 109.47020 * 59.99950 * 23 22 21 44 44 H 1.08996 * 109.46841 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46866 * 300.00025 * 23 22 21 46 46 H 1.07998 * 119.99893 * 179.97438 * 26 21 20 47 47 H 1.08004 * 120.00193 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1301 1.4424 0.0074 5 6 1.5461 2.1499 -1.2356 6 1 0.9246 3.0282 -1.1428 7 6 1.8877 1.6758 -2.4844 8 7 2.6441 0.6059 -2.5973 9 14 1.2748 2.5523 -4.0159 10 1 1.7694 3.9526 -4.0161 11 1 1.7786 1.8497 -5.2233 12 1 -0.2101 2.5518 -4.0257 13 7 1.5423 2.1379 1.1945 14 6 2.3804 1.8411 2.3639 15 6 1.7526 2.4640 3.6124 16 6 1.5355 3.9609 3.3815 17 8 0.4968 1.8360 3.8781 18 6 2.6725 2.2656 4.7895 19 6 4.0389 2.1927 4.5942 20 6 4.8830 2.0146 5.6743 21 6 4.3600 1.9008 6.9489 22 16 5.4354 1.6682 8.3250 23 6 5.5959 -0.1325 8.4749 24 8 6.6656 2.2457 7.9099 25 8 4.7127 2.1979 9.4279 26 6 2.9931 1.9689 7.1436 27 6 2.1493 2.1508 6.0639 28 1 -0.3632 0.5663 -0.8577 29 1 -0.3633 0.4597 0.9191 30 1 -0.3633 -1.0258 -0.0616 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 2.8841 0.2721 -3.4759 34 1 1.4827 3.1325 1.0353 35 1 2.4533 0.7614 2.4940 36 1 3.3764 2.2569 2.2120 37 1 0.8701 4.1043 2.5301 38 1 1.0878 4.4045 4.2707 39 1 2.4933 4.4399 3.1788 40 1 0.5586 0.8837 4.0346 41 1 4.4474 2.2775 3.5980 42 1 5.9509 1.9610 5.5222 43 1 6.0184 -0.5373 7.5554 44 1 6.2520 -0.3703 9.3122 45 1 4.6133 -0.5717 8.6476 46 1 2.5844 1.8796 8.1393 47 1 1.0813 2.2038 6.2160 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846989143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:44 Heat of formation + Delta-G solvation = -91.579080 kcal Electronic energy + Delta-G solvation = -28003.003824 eV Core-core repulsion = 24085.271513 eV Total energy + Delta-G solvation = -3917.732311 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.15073 -37.64712 -37.39910 -36.23467 -35.77537 -33.14242 -32.01712 -31.24437 -30.68503 -29.91893 -29.16472 -26.82774 -25.09271 -23.59378 -23.15043 -22.57633 -20.26448 -19.32690 -19.05361 -18.17185 -17.13494 -16.66832 -16.49729 -16.22296 -15.37148 -15.18845 -14.97117 -14.85232 -14.41717 -14.09665 -13.83668 -13.73524 -13.60302 -13.32239 -13.19671 -13.04957 -12.89804 -12.38294 -12.30290 -12.27860 -12.18861 -11.90192 -11.75584 -11.63544 -11.44375 -11.31651 -11.06479 -10.95364 -10.83677 -10.67125 -10.39789 -10.15649 -10.05559 -9.66623 -9.44046 -9.25420 -9.23412 -8.82909 -8.50521 -7.26821 -6.06417 -4.11883 -0.27165 0.57715 1.10534 2.55079 3.17752 3.27944 3.32915 3.35623 3.64252 3.78950 4.22731 4.34670 4.36821 4.42931 4.46630 4.67811 4.71243 5.06426 5.10596 5.22276 5.22814 5.24674 5.26898 5.42664 5.51421 5.70977 5.77174 5.83477 5.91060 6.00224 6.08482 6.12809 6.28856 6.38065 6.49817 6.63043 6.64054 6.82164 7.19122 7.24079 7.43687 7.70563 7.72347 7.77035 7.82571 8.22424 8.32367 8.60032 8.96383 9.53201 10.99541 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.002354 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.222844 B =11891.161680 C =12200.578490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.217 3.783 4 H -0.004 1.004 5 C -0.512 4.512 6 H 0.059 0.941 7 C 0.064 3.936 8 N -0.890 5.890 9 Si 0.894 3.106 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.276 1.276 13 N -0.674 5.674 14 C 0.038 3.962 15 C 0.170 3.830 16 C -0.136 4.136 17 O -0.536 6.536 18 C -0.052 4.052 19 C -0.133 4.133 20 C -0.025 4.025 21 C -0.665 4.665 22 S 2.502 3.498 23 C -0.650 4.650 24 O -0.939 6.939 25 O -0.941 6.941 26 C -0.027 4.027 27 C -0.126 4.126 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.011 0.989 31 H 0.006 0.994 32 H 0.086 0.914 33 H 0.261 0.739 34 H 0.331 0.669 35 H 0.069 0.931 36 H 0.029 0.971 37 H 0.083 0.917 38 H 0.059 0.941 39 H 0.066 0.934 40 H 0.373 0.627 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.133 0.867 44 H 0.130 0.870 45 H 0.132 0.868 46 H 0.140 0.860 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.988 -1.591 20.862 21.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.140 4.140 3 C 0.110 3.890 4 H 0.014 0.986 5 C -0.550 4.550 6 H 0.077 0.923 7 C -0.138 4.138 8 N -0.528 5.528 9 Si 0.722 3.278 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.202 1.202 13 N -0.306 5.306 14 C -0.093 4.093 15 C 0.129 3.871 16 C -0.193 4.193 17 O -0.341 6.341 18 C -0.053 4.053 19 C -0.151 4.151 20 C -0.044 4.044 21 C -0.752 4.752 22 S 2.682 3.318 23 C -0.800 4.800 24 O -0.937 6.937 25 O -0.938 6.938 26 C -0.046 4.046 27 C -0.144 4.144 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.031 0.969 31 H 0.025 0.975 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.150 0.850 35 H 0.087 0.913 36 H 0.047 0.953 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.220 0.780 41 H 0.157 0.843 42 H 0.159 0.841 43 H 0.151 0.849 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.158 0.842 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.764 -0.948 21.264 21.615 hybrid contribution 0.380 -0.304 -1.641 1.711 sum 4.144 -1.251 19.623 20.095 Atomic orbital electron populations 1.21446 0.97327 0.97274 1.01659 1.21434 0.95176 0.98189 0.99235 1.19122 0.92614 0.91507 0.85787 0.98593 1.21100 1.31661 1.12040 0.90225 0.92325 1.24878 0.95008 0.94997 0.98943 1.69865 1.36559 1.22645 1.23773 0.86628 0.79281 0.79616 0.82289 1.20378 1.21360 1.20167 1.60627 1.51679 1.13976 1.04293 1.22596 0.94531 1.00235 0.91916 1.20150 0.82648 0.94693 0.89649 1.21724 1.02653 0.91668 1.03280 1.86564 1.28872 1.25517 1.93146 1.21154 0.94963 0.93115 0.96080 1.21414 0.93048 1.00834 0.99837 1.20942 1.00354 0.92362 0.90698 1.30428 1.09375 1.19743 1.15694 1.05051 0.74542 0.77768 0.74453 1.30225 1.12053 1.25770 1.11962 1.93588 1.43476 1.74414 1.82186 1.93580 1.72884 1.76176 1.51150 1.20920 0.91217 0.92779 0.99696 1.21184 1.00883 1.00721 0.91644 0.92575 0.93558 0.96939 0.97523 0.89565 0.92884 0.85018 0.91288 0.95309 0.89845 0.92195 0.91461 0.77986 0.84338 0.84136 0.84884 0.85100 0.84957 0.84241 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.61 9.52 37.16 0.35 -2.26 16 2 C -0.10 -2.37 5.54 -26.73 -0.15 -2.52 16 3 C 0.22 5.13 2.29 -68.86 -0.16 4.97 16 4 H 0.00 -0.09 7.90 -51.93 -0.41 -0.50 16 5 C -0.51 -13.29 7.29 -34.44 -0.25 -13.54 16 6 H 0.06 1.52 7.66 -52.49 -0.40 1.12 16 7 C 0.06 1.69 5.30 -17.82 -0.09 1.60 16 8 N -0.89 -24.58 11.32 55.43 0.63 -23.95 16 9 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 13 N -0.67 -13.09 5.33 -107.94 -0.58 -13.66 16 14 C 0.04 0.60 4.15 -3.82 -0.02 0.58 16 15 C 0.17 2.26 1.01 -91.76 -0.09 2.17 16 16 C -0.14 -1.78 8.36 37.16 0.31 -1.47 16 17 O -0.54 -7.33 11.91 -35.23 -0.42 -7.75 16 18 C -0.05 -0.62 4.81 -104.63 -0.50 -1.12 16 19 C -0.13 -1.52 9.14 -39.59 -0.36 -1.89 16 20 C -0.02 -0.25 9.47 -39.58 -0.37 -0.63 16 21 C -0.67 -6.36 5.66 -39.58 -0.22 -6.59 16 22 S 2.50 20.06 5.80 -107.50 -0.62 19.43 16 23 C -0.65 -2.57 10.80 101.05 1.09 -1.48 16 24 O -0.94 -10.63 17.13 -57.54 -0.99 -11.62 16 25 O -0.94 -10.35 17.13 -57.54 -0.99 -11.33 16 26 C -0.03 -0.26 9.47 -39.58 -0.37 -0.64 16 27 C -0.13 -1.33 9.35 -39.58 -0.37 -1.70 16 28 H 0.06 1.34 7.11 -51.93 -0.37 0.97 16 29 H 0.05 0.97 7.70 -51.93 -0.40 0.57 16 30 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.01 0.13 7.21 -51.93 -0.37 -0.24 16 32 H 0.09 2.26 6.06 -51.93 -0.31 1.94 16 33 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.33 6.40 6.47 -39.29 -0.25 6.14 16 35 H 0.07 1.13 7.13 -51.93 -0.37 0.76 16 36 H 0.03 0.46 6.21 -51.93 -0.32 0.13 16 37 H 0.08 1.19 6.65 -51.93 -0.35 0.84 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.37 4.19 9.04 45.56 0.41 4.60 16 41 H 0.14 1.56 6.04 -52.48 -0.32 1.24 16 42 H 0.14 1.22 7.57 -52.49 -0.40 0.82 16 43 H 0.13 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.13 0.35 8.14 -51.92 -0.42 -0.08 16 46 H 0.14 1.07 7.57 -52.49 -0.40 0.67 16 47 H 0.14 1.35 7.48 -52.48 -0.39 0.95 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -33.47 386.62 -9.70 -43.16 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: -6.33 Total: 8.64 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -1.21 Total: -24.51 kcal Atomic # 7 Polarization: -37.66 SS G_CDS: 0.05 Total: -37.61 kcal Atomic # 8 Polarization: -28.31 SS G_CDS: -2.39 Total: -30.70 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 20.06 SS G_CDS: -0.62 Total: 19.43 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.47 -9.70 -43.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846989143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.414 kcal (2) G-P(sol) polarization free energy of solvation -33.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds