Wall clock time and date at job start Sat Apr 11 2020 06:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47527 * 2 1 4 4 H 1.09002 * 109.47391 * 179.58767 * 3 2 1 5 5 C 1.50705 * 109.47013 * 299.59064 * 3 2 1 6 6 H 1.07997 * 120.00225 * 119.99609 * 5 3 2 7 7 C 1.37876 * 119.99583 * 299.99785 * 5 3 2 8 8 N 1.31511 * 120.00207 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99852 * 179.97438 * 7 5 3 10 10 H 1.48506 * 109.46699 * 60.00185 * 9 7 5 11 11 H 1.48501 * 109.47055 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47107 * 300.00435 * 9 7 5 13 13 N 1.46909 * 109.47040 * 59.58424 * 3 2 1 14 14 C 1.46903 * 110.99419 * 82.18761 * 13 3 2 15 15 C 1.53007 * 109.46578 * 185.72916 * 14 13 3 16 16 C 1.53003 * 109.47138 * 304.99483 * 15 14 13 17 17 O 1.42898 * 109.47347 * 64.99863 * 15 14 13 18 18 C 1.50703 * 109.46553 * 184.99849 * 15 14 13 19 19 C 1.38224 * 120.00404 * 29.72725 * 18 15 14 20 20 C 1.38235 * 120.00329 * 179.80578 * 19 18 15 21 21 C 1.38238 * 119.99698 * 0.42167 * 20 19 18 22 22 S 1.76196 * 120.00073 * 179.78473 * 21 20 19 23 23 C 1.81401 * 104.45267 * 270.02292 * 22 21 20 24 24 O 1.42103 * 104.27799 * 26.09910 * 22 21 20 25 25 O 1.42100 * 104.27589 * 153.95109 * 22 21 20 26 26 C 1.38238 * 120.00017 * 359.80782 * 21 20 19 27 27 C 1.38236 * 119.99401 * 209.99787 * 18 15 14 28 28 H 1.09003 * 109.46439 * 56.56638 * 1 2 3 29 29 H 1.08996 * 109.47083 * 296.57495 * 1 2 3 30 30 H 1.08997 * 109.47247 * 176.56576 * 1 2 3 31 31 H 1.09006 * 109.46695 * 120.00050 * 2 1 3 32 32 H 1.09002 * 109.47236 * 239.99196 * 2 1 3 33 33 H 0.97002 * 120.00347 * 179.97438 * 8 7 5 34 34 H 1.00903 * 110.99869 * 206.13747 * 13 3 2 35 35 H 1.08994 * 109.46864 * 305.72246 * 14 13 3 36 36 H 1.08994 * 109.47486 * 65.72933 * 14 13 3 37 37 H 1.09004 * 109.46528 * 60.00489 * 16 15 14 38 38 H 1.08993 * 109.46764 * 179.97438 * 16 15 14 39 39 H 1.08998 * 109.47349 * 300.00696 * 16 15 14 40 40 H 0.96702 * 113.99922 * 59.99758 * 17 15 14 41 41 H 1.08007 * 120.00016 * 359.97438 * 19 18 15 42 42 H 1.08000 * 120.00533 * 180.20647 * 20 19 18 43 43 H 1.08994 * 109.47020 * 59.99950 * 23 22 21 44 44 H 1.08996 * 109.46841 * 180.02562 * 23 22 21 45 45 H 1.09003 * 109.46866 * 300.00025 * 23 22 21 46 46 H 1.07998 * 119.99893 * 179.97438 * 26 21 20 47 47 H 1.08004 * 120.00193 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 3.1301 1.4424 0.0074 5 6 1.5461 2.1499 -1.2356 6 1 0.9246 3.0282 -1.1428 7 6 1.8877 1.6758 -2.4844 8 7 2.6441 0.6059 -2.5973 9 14 1.2748 2.5523 -4.0159 10 1 1.7694 3.9526 -4.0161 11 1 1.7786 1.8497 -5.2233 12 1 -0.2101 2.5518 -4.0257 13 7 1.5423 2.1379 1.1945 14 6 2.3804 1.8411 2.3639 15 6 1.7526 2.4640 3.6124 16 6 1.5355 3.9609 3.3815 17 8 0.4968 1.8360 3.8781 18 6 2.6725 2.2656 4.7895 19 6 4.0389 2.1927 4.5942 20 6 4.8830 2.0146 5.6743 21 6 4.3600 1.9008 6.9489 22 16 5.4354 1.6682 8.3250 23 6 5.5959 -0.1325 8.4749 24 8 6.6656 2.2457 7.9099 25 8 4.7127 2.1979 9.4279 26 6 2.9931 1.9689 7.1436 27 6 2.1493 2.1508 6.0639 28 1 -0.3632 0.5663 -0.8577 29 1 -0.3633 0.4597 0.9191 30 1 -0.3633 -1.0258 -0.0616 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5140 -0.8899 33 1 2.8841 0.2721 -3.4759 34 1 1.4827 3.1325 1.0353 35 1 2.4533 0.7614 2.4940 36 1 3.3764 2.2569 2.2120 37 1 0.8701 4.1043 2.5301 38 1 1.0878 4.4045 4.2707 39 1 2.4933 4.4399 3.1788 40 1 0.5586 0.8837 4.0346 41 1 4.4474 2.2775 3.5980 42 1 5.9509 1.9610 5.5222 43 1 6.0184 -0.5373 7.5554 44 1 6.2520 -0.3703 9.3122 45 1 4.6133 -0.5717 8.6476 46 1 2.5844 1.8796 8.1393 47 1 1.0813 2.2038 6.2160 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846989143.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:43 Heat of formation + Delta-G solvation = -116.921731 kcal Electronic energy + Delta-G solvation = -28004.102764 eV Core-core repulsion = 24085.271513 eV Total energy + Delta-G solvation = -3918.831251 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.08502 -38.79074 -38.13545 -37.37072 -36.96565 -34.60402 -33.47585 -32.27232 -31.99421 -30.50316 -30.12146 -28.52083 -26.51446 -25.13657 -24.36795 -23.54184 -21.39505 -20.81000 -19.99997 -18.95352 -18.55537 -17.96812 -17.15404 -17.10590 -16.90730 -16.34459 -16.26032 -15.78297 -15.67257 -15.33836 -14.99869 -14.87550 -14.43148 -14.33636 -14.14006 -13.93335 -13.91539 -13.67098 -13.54766 -13.32299 -13.14206 -13.08191 -13.02091 -12.86787 -12.77181 -12.62353 -12.44210 -12.28755 -12.14867 -11.93515 -11.85811 -11.74341 -11.54445 -11.33082 -10.92270 -10.73986 -10.51647 -10.17995 -10.04562 -8.92084 -8.09754 -6.21226 -0.85440 -0.23716 0.29210 1.42410 1.43674 1.50529 1.92171 2.38753 2.42459 3.03896 3.17673 3.19281 3.21015 3.39178 3.77891 3.90542 3.94010 3.98373 4.08296 4.12510 4.21156 4.33218 4.49275 4.62797 4.63598 4.71224 4.76871 4.80063 4.87160 4.93922 4.96198 4.98134 4.98173 5.07992 5.12562 5.27407 5.32755 5.41015 5.45493 5.57274 5.71868 5.81815 5.83662 5.90640 6.30660 6.50316 6.78443 6.86521 7.04015 7.47641 8.95027 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021530 B = 0.002354 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1300.222844 B =11891.161680 C =12200.578490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.097 4.097 3 C 0.224 3.776 4 H -0.038 1.038 5 C -0.522 4.522 6 H 0.056 0.944 7 C 0.018 3.982 8 N -0.916 5.916 9 Si 0.951 3.049 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.273 1.273 13 N -0.670 5.670 14 C 0.040 3.960 15 C 0.183 3.817 16 C -0.137 4.137 17 O -0.546 6.546 18 C -0.063 4.063 19 C -0.146 4.146 20 C -0.033 4.033 21 C -0.664 4.664 22 S 2.510 3.490 23 C -0.626 4.626 24 O -0.979 6.979 25 O -0.974 6.974 26 C -0.030 4.030 27 C -0.127 4.127 28 H 0.031 0.969 29 H 0.055 0.945 30 H 0.030 0.970 31 H 0.020 0.980 32 H 0.056 0.944 33 H 0.260 0.740 34 H 0.332 0.668 35 H 0.064 0.936 36 H 0.029 0.971 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.384 0.616 41 H 0.133 0.867 42 H 0.153 0.847 43 H 0.150 0.850 44 H 0.154 0.846 45 H 0.154 0.846 46 H 0.161 0.839 47 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.603 -2.349 22.586 22.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.136 4.136 3 C 0.115 3.885 4 H -0.021 1.021 5 C -0.560 4.560 6 H 0.074 0.926 7 C -0.181 4.181 8 N -0.556 5.556 9 Si 0.777 3.223 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.301 5.301 14 C -0.090 4.090 15 C 0.141 3.859 16 C -0.194 4.194 17 O -0.352 6.352 18 C -0.064 4.064 19 C -0.164 4.164 20 C -0.052 4.052 21 C -0.750 4.750 22 S 2.693 3.307 23 C -0.779 4.779 24 O -0.976 6.976 25 O -0.972 6.972 26 C -0.048 4.048 27 C -0.145 4.145 28 H 0.050 0.950 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.150 0.850 35 H 0.082 0.918 36 H 0.047 0.953 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.232 0.768 41 H 0.151 0.849 42 H 0.170 0.830 43 H 0.168 0.832 44 H 0.173 0.827 45 H 0.173 0.827 46 H 0.178 0.822 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 3.359 -1.657 22.988 23.291 hybrid contribution 0.555 -0.142 -2.068 2.146 sum 3.914 -1.799 20.920 21.359 Atomic orbital electron populations 1.21292 0.95969 0.98133 1.00947 1.21300 0.96224 0.97643 0.98401 1.18893 0.90463 0.92170 0.86937 1.02068 1.21392 1.31288 1.11993 0.91372 0.92629 1.25583 0.95257 0.95645 1.01634 1.69998 1.37607 1.23819 1.24156 0.85717 0.78779 0.78715 0.79051 1.19804 1.21247 1.19812 1.60542 1.52117 1.13674 1.03755 1.22637 0.94356 1.00205 0.91765 1.19905 0.82691 0.94362 0.88942 1.21731 1.02711 0.91846 1.03132 1.86538 1.29021 1.26560 1.93083 1.20952 0.94674 0.94806 0.95947 1.21450 0.93278 1.01602 1.00097 1.21125 1.00943 0.92315 0.90785 1.30698 1.09764 1.18630 1.15861 1.04765 0.73030 0.79885 0.73043 1.30041 1.14267 1.19655 1.13976 1.93539 1.44588 1.77044 1.82434 1.93535 1.73271 1.78585 1.51781 1.21209 0.91209 0.92038 1.00391 1.21305 1.01542 1.00384 0.91301 0.94964 0.92600 0.95063 0.96084 0.92596 0.93055 0.85003 0.91773 0.95314 0.91237 0.91180 0.90967 0.76780 0.84922 0.82975 0.83157 0.82742 0.82723 0.82195 0.83412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.56 9.52 71.98 0.69 -3.88 16 2 C -0.10 -4.55 5.54 30.59 0.17 -4.38 16 3 C 0.22 10.78 2.29 44.17 0.10 10.88 16 4 H -0.04 -2.07 7.90 -2.39 -0.02 -2.09 16 5 C -0.52 -27.51 7.29 25.60 0.19 -27.32 16 6 H 0.06 2.90 7.66 -2.91 -0.02 2.88 16 7 C 0.02 0.97 5.30 84.65 0.45 1.42 16 8 N -0.92 -51.62 11.32 21.45 0.24 -51.38 16 9 Si 0.95 42.86 29.54 68.60 2.03 44.88 16 10 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 13 N -0.67 -26.18 5.33 -495.42 -2.64 -28.82 16 14 C 0.04 1.29 4.15 86.30 0.36 1.65 16 15 C 0.18 4.73 1.01 -11.54 -0.01 4.72 16 16 C -0.14 -3.51 8.36 71.98 0.60 -2.91 16 17 O -0.55 -14.22 11.91 -148.98 -1.77 -15.99 16 18 C -0.06 -1.43 4.81 -19.87 -0.10 -1.52 16 19 C -0.15 -3.29 9.14 22.27 0.20 -3.08 16 20 C -0.03 -0.65 9.47 22.27 0.21 -0.44 16 21 C -0.66 -11.65 5.66 22.27 0.13 -11.52 16 22 S 2.51 35.91 5.80 -56.49 -0.33 35.58 16 23 C -0.63 -2.44 10.80 113.37 1.22 -1.22 16 24 O -0.98 -21.39 17.13 -127.65 -2.19 -23.58 16 25 O -0.97 -20.10 17.13 -127.65 -2.19 -22.29 16 26 C -0.03 -0.52 9.47 22.27 0.21 -0.31 16 27 C -0.13 -2.48 9.35 22.27 0.21 -2.27 16 28 H 0.03 1.51 7.11 -2.39 -0.02 1.49 16 29 H 0.05 2.26 7.70 -2.39 -0.02 2.25 16 30 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 31 H 0.02 0.89 7.21 -2.38 -0.02 0.87 16 32 H 0.06 2.98 6.06 -2.39 -0.01 2.97 16 33 H 0.26 14.08 8.31 -92.71 -0.77 13.31 16 34 H 0.33 12.95 6.47 -89.69 -0.58 12.37 16 35 H 0.06 2.10 7.13 -2.39 -0.02 2.08 16 36 H 0.03 0.93 6.21 -2.39 -0.01 0.91 16 37 H 0.07 1.96 6.65 -2.38 -0.02 1.95 16 38 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 39 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 40 H 0.38 8.03 9.04 -74.06 -0.67 7.36 16 41 H 0.13 3.05 6.04 -2.91 -0.02 3.04 16 42 H 0.15 2.53 7.57 -2.91 -0.02 2.51 16 43 H 0.15 0.23 8.14 -2.39 -0.02 0.22 16 44 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 45 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 46 H 0.16 2.07 7.57 -2.91 -0.02 2.04 16 47 H 0.15 2.58 7.48 -2.91 -0.02 2.56 16 Total: -1.00 -72.72 386.62 -2.47 -75.19 By element: Atomic # 1 Polarization: 26.86 SS G_CDS: -0.26 Total: 26.60 kcal Atomic # 6 Polarization: -44.82 SS G_CDS: 4.63 Total: -40.20 kcal Atomic # 7 Polarization: -77.80 SS G_CDS: -2.40 Total: -80.20 kcal Atomic # 8 Polarization: -55.72 SS G_CDS: -6.15 Total: -61.87 kcal Atomic # 14 Polarization: 42.86 SS G_CDS: 2.03 Total: 44.88 kcal Atomic # 16 Polarization: 35.91 SS G_CDS: -0.33 Total: 35.58 kcal Total: -72.72 -2.47 -75.19 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846989143.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.730 kcal (2) G-P(sol) polarization free energy of solvation -72.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.191 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds