Wall clock time and date at job start Sat Apr 11 2020 06:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46648 * 2 1 4 4 H 1.08993 * 109.47539 * 305.88000 * 3 2 1 5 5 C 1.50701 * 109.46829 * 185.87358 * 3 2 1 6 6 H 1.08000 * 119.99947 * 239.26763 * 5 3 2 7 7 C 1.37879 * 120.00019 * 59.27015 * 5 3 2 8 8 N 1.31509 * 119.99943 * 199.38785 * 7 5 3 9 9 Si 1.86801 * 119.99935 * 19.38652 * 7 5 3 10 10 H 1.48499 * 109.47269 * 86.10928 * 9 7 5 11 11 H 1.48501 * 109.47130 * 206.11170 * 9 7 5 12 12 H 1.48509 * 109.47080 * 326.10880 * 9 7 5 13 13 N 1.46903 * 109.46970 * 65.87977 * 3 2 1 14 14 C 1.46906 * 110.99882 * 253.69643 * 13 3 2 15 15 C 1.52997 * 109.46984 * 185.70196 * 14 13 3 16 16 C 1.52998 * 109.47335 * 304.99817 * 15 14 13 17 17 O 1.42894 * 109.47134 * 65.00260 * 15 14 13 18 18 C 1.50706 * 109.46976 * 185.00288 * 15 14 13 19 19 C 1.38232 * 119.99950 * 29.72240 * 18 15 14 20 20 C 1.38239 * 119.99953 * 179.81246 * 19 18 15 21 21 C 1.38233 * 119.99800 * 0.42083 * 20 19 18 22 22 S 1.76196 * 119.99931 * 179.78850 * 21 20 19 23 23 C 1.81405 * 104.45141 * 270.02201 * 22 21 20 24 24 O 1.42096 * 104.27726 * 26.09668 * 22 21 20 25 25 O 1.42104 * 104.27719 * 153.95156 * 22 21 20 26 26 C 1.38240 * 120.00089 * 359.81534 * 21 20 19 27 27 C 1.38229 * 119.99873 * 210.00207 * 18 15 14 28 28 H 1.08999 * 109.47545 * 297.79855 * 1 2 3 29 29 H 1.09007 * 109.47293 * 57.80230 * 1 2 3 30 30 H 1.09005 * 109.47183 * 177.79547 * 1 2 3 31 31 H 1.08997 * 109.47227 * 240.00837 * 2 1 3 32 32 H 1.08995 * 109.47139 * 120.00033 * 2 1 3 33 33 H 0.96998 * 120.00022 * 179.97438 * 8 7 5 34 34 H 1.00905 * 111.00111 * 17.65009 * 13 3 2 35 35 H 1.09000 * 109.47078 * 305.70627 * 14 13 3 36 36 H 1.09007 * 109.46861 * 65.69924 * 14 13 3 37 37 H 1.09000 * 109.46997 * 60.00228 * 16 15 14 38 38 H 1.08995 * 109.47184 * 180.02562 * 16 15 14 39 39 H 1.09003 * 109.47285 * 300.00600 * 16 15 14 40 40 H 0.96696 * 114.00740 * 60.00030 * 17 15 14 41 41 H 1.08000 * 119.99969 * 0.02562 * 19 18 15 42 42 H 1.08001 * 120.00064 * 180.21129 * 20 19 18 43 43 H 1.09004 * 109.46727 * 60.00001 * 23 22 21 44 44 H 1.08995 * 109.46878 * 179.97438 * 23 22 21 45 45 H 1.08992 * 109.47023 * 299.99949 * 23 22 21 46 46 H 1.07998 * 119.99654 * 179.97438 * 26 21 20 47 47 H 1.08000 * 120.00312 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5932 1.9859 -0.8326 5 6 3.5399 1.4451 -0.1454 6 1 4.1557 1.8963 0.6185 7 6 4.1260 0.8715 -1.2537 8 7 5.3947 0.5267 -1.2223 9 14 3.1180 0.5840 -2.8000 10 1 3.1306 1.8123 -3.6345 11 1 3.7027 -0.5434 -3.5696 12 1 1.7193 0.2547 -2.4250 13 7 1.6694 2.0928 1.2641 14 6 0.5743 3.0510 1.0620 15 6 0.3127 3.8086 2.3653 16 6 0.0479 2.8084 3.4924 17 8 1.4546 4.6031 2.6919 18 6 -0.8887 4.7023 2.1942 19 6 -1.8975 4.3443 1.3195 20 6 -3.0013 5.1621 1.1656 21 6 -3.0923 6.3421 1.8798 22 16 -4.4966 7.3872 1.6794 23 6 -4.0391 8.5058 0.3266 24 8 -5.5333 6.5063 1.2691 25 8 -4.5824 8.0981 2.9069 26 6 -2.0812 6.7025 2.7509 27 6 -0.9792 5.8827 2.9078 28 1 -0.3634 0.4792 0.9090 29 1 -0.3634 0.5476 -0.8697 30 1 -0.3634 -1.0269 -0.0395 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8070 0.1228 -2.0019 34 1 1.4267 1.4088 1.9651 35 1 0.8500 3.7581 0.2797 36 1 -0.3275 2.5150 0.7659 37 1 0.9168 2.1621 3.6161 38 1 -0.1390 3.3482 4.4207 39 1 -0.8232 2.2024 3.2432 40 1 1.6815 5.2607 2.0203 41 1 -1.8248 3.4240 0.7590 42 1 -3.7911 4.8807 0.4847 43 1 -3.8332 7.9241 -0.5719 44 1 -4.8603 9.1957 0.1322 45 1 -3.1491 9.0694 0.6064 46 1 -2.1521 7.6246 3.3086 47 1 -0.1892 6.1644 3.5881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846989147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:50 Heat of formation + Delta-G solvation = -82.292919 kcal Electronic energy + Delta-G solvation = -28139.140819 eV Core-core repulsion = 24221.811186 eV Total energy + Delta-G solvation = -3917.329633 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.22103 -37.80445 -37.43482 -36.28431 -36.13594 -33.07357 -32.13159 -31.35847 -31.09858 -29.97473 -29.36447 -27.51534 -25.44704 -23.63102 -22.85946 -22.27091 -20.26783 -20.01921 -19.34069 -18.26162 -17.28230 -16.71159 -16.53466 -16.31700 -15.61003 -15.43739 -14.99701 -14.76448 -14.69493 -14.31512 -13.97306 -13.77855 -13.73200 -13.63237 -13.22044 -13.01568 -12.89720 -12.71061 -12.41719 -12.37594 -12.31586 -12.15777 -11.93142 -11.72101 -11.63968 -11.48190 -11.36453 -11.11868 -11.00759 -10.83008 -10.69169 -10.51932 -10.12128 -9.86342 -9.52021 -9.34981 -9.29538 -9.26939 -8.36652 -7.35957 -6.09761 -3.98631 -0.30719 0.52835 1.05397 2.51447 3.12965 3.23669 3.32376 3.35548 3.60378 3.75525 4.18079 4.31527 4.34494 4.40331 4.43041 4.63009 4.66575 4.97544 5.02487 5.12878 5.16633 5.19756 5.21389 5.24051 5.44490 5.63349 5.66637 5.70298 5.75254 5.79047 5.82842 5.90290 5.93677 5.96761 6.05672 6.22483 6.29155 6.40387 6.51363 6.57669 6.67621 6.80337 7.13171 7.74073 7.78985 7.89462 8.26154 8.69610 9.11812 9.58587 11.03752 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.002624 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.568942 B =10666.201682 C =11130.189117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.153 4.153 3 C 0.196 3.804 4 H 0.017 0.983 5 C -0.502 4.502 6 H 0.081 0.919 7 C 0.073 3.927 8 N -0.890 5.890 9 Si 0.854 3.146 10 H -0.281 1.281 11 H -0.289 1.289 12 H -0.254 1.254 13 N -0.661 5.661 14 C 0.035 3.965 15 C 0.170 3.830 16 C -0.137 4.137 17 O -0.535 6.535 18 C -0.052 4.052 19 C -0.134 4.134 20 C -0.025 4.025 21 C -0.665 4.665 22 S 2.502 3.498 23 C -0.650 4.650 24 O -0.940 6.940 25 O -0.940 6.940 26 C -0.026 4.026 27 C -0.124 4.124 28 H 0.043 0.957 29 H 0.044 0.956 30 H 0.043 0.957 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.262 0.738 34 H 0.329 0.671 35 H 0.072 0.928 36 H 0.032 0.968 37 H 0.082 0.918 38 H 0.061 0.939 39 H 0.065 0.935 40 H 0.376 0.624 41 H 0.137 0.863 42 H 0.140 0.860 43 H 0.132 0.868 44 H 0.131 0.869 45 H 0.132 0.868 46 H 0.141 0.859 47 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.160 13.536 4.410 23.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.192 4.192 3 C 0.087 3.913 4 H 0.034 0.966 5 C -0.540 4.540 6 H 0.099 0.901 7 C -0.129 4.129 8 N -0.527 5.527 9 Si 0.681 3.319 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.179 1.179 13 N -0.291 5.291 14 C -0.095 4.095 15 C 0.128 3.872 16 C -0.194 4.194 17 O -0.340 6.340 18 C -0.054 4.054 19 C -0.153 4.153 20 C -0.044 4.044 21 C -0.752 4.752 22 S 2.682 3.318 23 C -0.800 4.800 24 O -0.937 6.937 25 O -0.937 6.937 26 C -0.045 4.045 27 C -0.143 4.143 28 H 0.062 0.938 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.083 0.917 32 H 0.078 0.922 33 H 0.072 0.928 34 H 0.147 0.853 35 H 0.090 0.910 36 H 0.049 0.951 37 H 0.101 0.899 38 H 0.080 0.920 39 H 0.084 0.916 40 H 0.223 0.777 41 H 0.155 0.845 42 H 0.158 0.842 43 H 0.151 0.849 44 H 0.149 0.851 45 H 0.151 0.849 46 H 0.158 0.842 47 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -19.262 13.517 5.264 24.113 hybrid contribution -0.366 -0.572 -2.171 2.275 sum -19.628 12.945 3.093 23.715 Atomic orbital electron populations 1.21942 0.98609 1.00361 1.00291 1.22657 0.92645 1.01546 1.02346 1.19534 0.96812 0.88219 0.86722 0.96555 1.20985 0.89204 1.36976 1.06842 0.90081 1.24902 0.94730 0.94692 0.98578 1.70012 1.12560 1.40563 1.29605 0.87445 0.81962 0.77870 0.84617 1.20774 1.21545 1.17855 1.60534 1.37084 1.20522 1.11006 1.22759 0.94152 0.96986 0.95643 1.20118 0.82037 0.89156 0.95865 1.21736 1.02584 0.98169 0.96952 1.86572 1.46650 1.52353 1.48387 1.21145 0.96227 0.94867 0.93113 1.21374 0.93839 1.00896 0.99171 1.20928 0.96751 0.91527 0.95180 1.30440 1.20667 1.13179 1.10909 1.05045 0.74666 0.75678 0.76382 1.30224 1.13005 1.16904 1.19867 1.93585 1.52985 1.63293 1.83841 1.93583 1.85788 1.74156 1.40203 1.20935 0.91201 0.98990 0.93367 1.21196 0.98583 0.94350 1.00169 0.93766 0.93707 0.93808 0.91700 0.92237 0.92794 0.85280 0.90990 0.95071 0.89870 0.91981 0.91580 0.77694 0.84525 0.84177 0.84914 0.85097 0.84920 0.84173 0.84208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.50 9.12 37.16 0.34 -2.16 16 2 C -0.15 -3.09 4.47 -26.73 -0.12 -3.21 16 3 C 0.20 4.30 1.75 -68.86 -0.12 4.18 16 4 H 0.02 0.37 6.48 -51.93 -0.34 0.04 16 5 C -0.50 -13.70 9.30 -34.44 -0.32 -14.02 16 6 H 0.08 2.49 8.06 -52.49 -0.42 2.06 16 7 C 0.07 2.04 5.26 -17.82 -0.09 1.95 16 8 N -0.89 -26.71 13.96 55.43 0.77 -25.94 16 9 Si 0.85 20.41 25.82 -169.99 -4.39 16.02 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.25 -5.62 5.46 56.52 0.31 -5.31 16 13 N -0.66 -12.34 5.82 -107.94 -0.63 -12.97 16 14 C 0.04 0.52 3.83 -3.82 -0.01 0.51 16 15 C 0.17 2.18 1.01 -91.77 -0.09 2.09 16 16 C -0.14 -1.69 8.36 37.16 0.31 -1.38 16 17 O -0.53 -7.42 11.91 -35.23 -0.42 -7.84 16 18 C -0.05 -0.59 4.81 -104.62 -0.50 -1.09 16 19 C -0.13 -1.43 9.14 -39.58 -0.36 -1.79 16 20 C -0.02 -0.24 9.47 -39.58 -0.37 -0.62 16 21 C -0.66 -6.05 5.66 -39.58 -0.22 -6.27 16 22 S 2.50 19.06 5.80 -107.50 -0.62 18.43 16 23 C -0.65 -2.38 10.80 101.05 1.09 -1.29 16 24 O -0.94 -10.20 17.13 -57.54 -0.99 -11.18 16 25 O -0.94 -10.03 17.13 -57.54 -0.99 -11.02 16 26 C -0.03 -0.24 9.47 -39.58 -0.37 -0.62 16 27 C -0.12 -1.28 9.35 -39.59 -0.37 -1.65 16 28 H 0.04 0.63 6.42 -51.93 -0.33 0.30 16 29 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 1.43 4.50 -51.93 -0.23 1.19 16 32 H 0.06 1.20 8.04 -51.93 -0.42 0.79 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.33 5.77 5.94 -39.29 -0.23 5.53 16 35 H 0.07 1.13 7.98 -51.93 -0.41 0.72 16 36 H 0.03 0.43 4.61 -51.92 -0.24 0.19 16 37 H 0.08 1.12 6.65 -51.93 -0.35 0.77 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.38 4.32 9.04 45.56 0.41 4.73 16 41 H 0.14 1.38 6.04 -52.49 -0.32 1.06 16 42 H 0.14 1.11 7.57 -52.49 -0.40 0.72 16 43 H 0.13 0.35 8.14 -51.92 -0.42 -0.08 16 44 H 0.13 0.29 8.14 -51.93 -0.42 -0.13 16 45 H 0.13 0.32 8.14 -51.93 -0.42 -0.10 16 46 H 0.14 1.04 7.57 -52.49 -0.40 0.64 16 47 H 0.14 1.33 7.48 -52.49 -0.39 0.93 16 LS Contribution 380.73 15.07 5.74 5.74 Total: -1.00 -35.83 380.73 -9.01 -44.84 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -6.26 Total: 9.30 kcal Atomic # 6 Polarization: -24.15 SS G_CDS: -1.23 Total: -25.38 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.15 Total: -38.91 kcal Atomic # 8 Polarization: -27.65 SS G_CDS: -2.39 Total: -30.04 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.39 Total: 16.02 kcal Atomic # 16 Polarization: 19.06 SS G_CDS: -0.62 Total: 18.43 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.83 -9.01 -44.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846989147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.453 kcal (2) G-P(sol) polarization free energy of solvation -35.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds