Wall clock time and date at job start Sat Apr 11 2020 06:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53003 * 109.46648 * 2 1 4 4 H 1.08993 * 109.47539 * 305.88000 * 3 2 1 5 5 C 1.50701 * 109.46829 * 185.87358 * 3 2 1 6 6 H 1.08000 * 119.99947 * 239.26763 * 5 3 2 7 7 C 1.37879 * 120.00019 * 59.27015 * 5 3 2 8 8 N 1.31509 * 119.99943 * 199.38785 * 7 5 3 9 9 Si 1.86801 * 119.99935 * 19.38652 * 7 5 3 10 10 H 1.48499 * 109.47269 * 86.10928 * 9 7 5 11 11 H 1.48501 * 109.47130 * 206.11170 * 9 7 5 12 12 H 1.48509 * 109.47080 * 326.10880 * 9 7 5 13 13 N 1.46903 * 109.46970 * 65.87977 * 3 2 1 14 14 C 1.46906 * 110.99882 * 253.69643 * 13 3 2 15 15 C 1.52997 * 109.46984 * 185.70196 * 14 13 3 16 16 C 1.52998 * 109.47335 * 304.99817 * 15 14 13 17 17 O 1.42894 * 109.47134 * 65.00260 * 15 14 13 18 18 C 1.50706 * 109.46976 * 185.00288 * 15 14 13 19 19 C 1.38232 * 119.99950 * 29.72240 * 18 15 14 20 20 C 1.38239 * 119.99953 * 179.81246 * 19 18 15 21 21 C 1.38233 * 119.99800 * 0.42083 * 20 19 18 22 22 S 1.76196 * 119.99931 * 179.78850 * 21 20 19 23 23 C 1.81405 * 104.45141 * 270.02201 * 22 21 20 24 24 O 1.42096 * 104.27726 * 26.09668 * 22 21 20 25 25 O 1.42104 * 104.27719 * 153.95156 * 22 21 20 26 26 C 1.38240 * 120.00089 * 359.81534 * 21 20 19 27 27 C 1.38229 * 119.99873 * 210.00207 * 18 15 14 28 28 H 1.08999 * 109.47545 * 297.79855 * 1 2 3 29 29 H 1.09007 * 109.47293 * 57.80230 * 1 2 3 30 30 H 1.09005 * 109.47183 * 177.79547 * 1 2 3 31 31 H 1.08997 * 109.47227 * 240.00837 * 2 1 3 32 32 H 1.08995 * 109.47139 * 120.00033 * 2 1 3 33 33 H 0.96998 * 120.00022 * 179.97438 * 8 7 5 34 34 H 1.00905 * 111.00111 * 17.65009 * 13 3 2 35 35 H 1.09000 * 109.47078 * 305.70627 * 14 13 3 36 36 H 1.09007 * 109.46861 * 65.69924 * 14 13 3 37 37 H 1.09000 * 109.46997 * 60.00228 * 16 15 14 38 38 H 1.08995 * 109.47184 * 180.02562 * 16 15 14 39 39 H 1.09003 * 109.47285 * 300.00600 * 16 15 14 40 40 H 0.96696 * 114.00740 * 60.00030 * 17 15 14 41 41 H 1.08000 * 119.99969 * 0.02562 * 19 18 15 42 42 H 1.08001 * 120.00064 * 180.21129 * 20 19 18 43 43 H 1.09004 * 109.46727 * 60.00001 * 23 22 21 44 44 H 1.08995 * 109.46878 * 179.97438 * 23 22 21 45 45 H 1.08992 * 109.47023 * 299.99949 * 23 22 21 46 46 H 1.07998 * 119.99654 * 179.97438 * 26 21 20 47 47 H 1.08000 * 120.00312 * 359.97438 * 27 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.5932 1.9859 -0.8326 5 6 3.5399 1.4451 -0.1454 6 1 4.1557 1.8963 0.6185 7 6 4.1260 0.8715 -1.2537 8 7 5.3947 0.5267 -1.2223 9 14 3.1180 0.5840 -2.8000 10 1 3.1306 1.8123 -3.6345 11 1 3.7027 -0.5434 -3.5696 12 1 1.7193 0.2547 -2.4250 13 7 1.6694 2.0928 1.2641 14 6 0.5743 3.0510 1.0620 15 6 0.3127 3.8086 2.3653 16 6 0.0479 2.8084 3.4924 17 8 1.4546 4.6031 2.6919 18 6 -0.8887 4.7023 2.1942 19 6 -1.8975 4.3443 1.3195 20 6 -3.0013 5.1621 1.1656 21 6 -3.0923 6.3421 1.8798 22 16 -4.4966 7.3872 1.6794 23 6 -4.0391 8.5058 0.3266 24 8 -5.5333 6.5063 1.2691 25 8 -4.5824 8.0981 2.9069 26 6 -2.0812 6.7025 2.7509 27 6 -0.9792 5.8827 2.9078 28 1 -0.3634 0.4792 0.9090 29 1 -0.3634 0.5476 -0.8697 30 1 -0.3634 -1.0269 -0.0395 31 1 1.8933 -0.5137 -0.8900 32 1 1.8933 -0.5138 0.8899 33 1 5.8070 0.1228 -2.0019 34 1 1.4267 1.4088 1.9651 35 1 0.8500 3.7581 0.2797 36 1 -0.3275 2.5150 0.7659 37 1 0.9168 2.1621 3.6161 38 1 -0.1390 3.3482 4.4207 39 1 -0.8232 2.2024 3.2432 40 1 1.6815 5.2607 2.0203 41 1 -1.8248 3.4240 0.7590 42 1 -3.7911 4.8807 0.4847 43 1 -3.8332 7.9241 -0.5719 44 1 -4.8603 9.1957 0.1322 45 1 -3.1491 9.0694 0.6064 46 1 -2.1521 7.6246 3.3086 47 1 -0.1892 6.1644 3.5881 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846989147.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:49 Heat of formation + Delta-G solvation = -111.849763 kcal Electronic energy + Delta-G solvation = -28140.422500 eV Core-core repulsion = 24221.811186 eV Total energy + Delta-G solvation = -3918.611314 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.10140 -38.92848 -38.12779 -37.54230 -36.95899 -34.57176 -33.74126 -32.42134 -31.99820 -30.58400 -30.15996 -29.14052 -26.72376 -24.68424 -24.02562 -23.40549 -21.75742 -21.22380 -20.00062 -19.00806 -18.81450 -18.06389 -17.15300 -17.08998 -16.91901 -16.61892 -16.11630 -15.89643 -15.75805 -15.52474 -15.17849 -14.78699 -14.51422 -14.28123 -14.22871 -14.07753 -13.92755 -13.70579 -13.49937 -13.43214 -13.31724 -13.13294 -13.06694 -13.00686 -12.75224 -12.61539 -12.54492 -12.35325 -12.25615 -12.12986 -11.84316 -11.70629 -11.57268 -11.41668 -11.21955 -10.89148 -10.46104 -10.16345 -10.03330 -8.85948 -8.26091 -6.19442 -0.84754 -0.22610 0.30548 1.34368 1.38227 1.46058 1.93319 2.37666 2.40006 3.03762 3.04773 3.16942 3.20510 3.38735 3.78455 3.86585 3.93781 3.96970 4.05665 4.12496 4.21402 4.30546 4.32737 4.38633 4.47901 4.50927 4.62589 4.71398 4.74528 4.82911 4.86985 4.94559 4.98396 4.98479 5.06346 5.08826 5.13459 5.16720 5.25243 5.27801 5.45797 5.52251 5.77529 5.83078 6.09798 6.71465 6.79898 6.86560 6.89766 7.42527 8.91697 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.017745 B = 0.002624 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1577.568942 B =10666.201682 C =11130.189117 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.152 4.152 3 C 0.203 3.797 4 H 0.020 0.980 5 C -0.508 4.508 6 H 0.028 0.972 7 C 0.014 3.986 8 N -0.944 5.944 9 Si 0.923 3.077 10 H -0.279 1.279 11 H -0.292 1.292 12 H -0.221 1.221 13 N -0.676 5.676 14 C 0.038 3.962 15 C 0.176 3.824 16 C -0.138 4.138 17 O -0.552 6.552 18 C -0.063 4.063 19 C -0.142 4.142 20 C -0.032 4.032 21 C -0.664 4.664 22 S 2.511 3.489 23 C -0.627 4.627 24 O -0.977 6.977 25 O -0.976 6.976 26 C -0.031 4.031 27 C -0.130 4.130 28 H 0.062 0.938 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.263 0.737 34 H 0.335 0.665 35 H 0.062 0.938 36 H 0.052 0.948 37 H 0.066 0.934 38 H 0.066 0.934 39 H 0.082 0.918 40 H 0.383 0.617 41 H 0.143 0.857 42 H 0.156 0.844 43 H 0.151 0.849 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.157 0.843 47 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.424 14.565 3.115 26.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.191 4.191 3 C 0.093 3.907 4 H 0.037 0.963 5 C -0.546 4.546 6 H 0.046 0.954 7 C -0.183 4.183 8 N -0.585 5.585 9 Si 0.748 3.252 10 H -0.205 1.205 11 H -0.219 1.219 12 H -0.144 1.144 13 N -0.308 5.308 14 C -0.092 4.092 15 C 0.135 3.865 16 C -0.195 4.195 17 O -0.359 6.359 18 C -0.064 4.064 19 C -0.161 4.161 20 C -0.050 4.050 21 C -0.750 4.750 22 S 2.694 3.306 23 C -0.780 4.780 24 O -0.974 6.974 25 O -0.974 6.974 26 C -0.050 4.050 27 C -0.149 4.149 28 H 0.081 0.919 29 H 0.070 0.930 30 H 0.081 0.919 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.154 0.846 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.085 0.915 38 H 0.085 0.915 39 H 0.100 0.900 40 H 0.232 0.768 41 H 0.161 0.839 42 H 0.174 0.826 43 H 0.170 0.830 44 H 0.171 0.829 45 H 0.171 0.829 46 H 0.174 0.826 47 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.558 14.526 4.021 27.130 hybrid contribution 0.702 -0.760 -1.690 1.982 sum -21.856 13.765 2.331 25.935 Atomic orbital electron populations 1.21854 0.94821 1.02104 1.01597 1.22508 0.95975 0.99447 1.01160 1.19289 0.93172 0.89925 0.88276 0.96267 1.21309 0.92091 1.35807 1.05421 0.95364 1.25775 0.95836 0.94620 1.02103 1.70171 1.14998 1.42642 1.30659 0.86318 0.81858 0.77549 0.79523 1.20481 1.21874 1.14351 1.60304 1.39701 1.20997 1.09762 1.22789 0.93483 0.96126 0.96756 1.20019 0.82450 0.89250 0.94791 1.21758 1.02493 0.98090 0.97184 1.86547 1.47470 1.52788 1.49076 1.20937 0.95865 0.95162 0.94388 1.21481 0.94014 1.01390 0.99182 1.21165 0.96845 0.91491 0.95527 1.30687 1.20684 1.13371 1.10253 1.04717 0.73630 0.75431 0.76804 1.30048 1.14703 1.15897 1.17401 1.93537 1.54431 1.65023 1.84405 1.93537 1.86113 1.74405 1.43312 1.21170 0.90874 0.99488 0.93431 1.21281 0.99118 0.94256 1.00209 0.91942 0.92981 0.91859 0.93421 0.93078 0.92851 0.84569 0.91901 0.92988 0.91504 0.91536 0.89959 0.76825 0.83948 0.82611 0.83038 0.82864 0.82932 0.82563 0.83985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.19 9.12 71.98 0.66 -3.53 16 2 C -0.15 -5.89 4.47 30.60 0.14 -5.76 16 3 C 0.20 8.80 1.75 44.17 0.08 8.88 16 4 H 0.02 0.84 6.48 -2.39 -0.02 0.83 16 5 C -0.51 -28.66 9.30 25.60 0.24 -28.42 16 6 H 0.03 1.84 8.06 -2.91 -0.02 1.81 16 7 C 0.01 0.80 5.26 84.66 0.45 1.24 16 8 N -0.94 -59.01 13.96 21.45 0.30 -58.71 16 9 Si 0.92 42.25 25.82 68.60 1.77 44.02 16 10 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.29 -13.47 7.11 99.48 0.71 -12.76 16 12 H -0.22 -8.85 5.46 99.48 0.54 -8.31 16 13 N -0.68 -25.08 5.82 -495.42 -2.88 -27.96 16 14 C 0.04 1.09 3.83 86.30 0.33 1.42 16 15 C 0.18 4.35 1.01 -11.54 -0.01 4.34 16 16 C -0.14 -3.25 8.36 71.98 0.60 -2.65 16 17 O -0.55 -15.32 11.91 -148.98 -1.77 -17.10 16 18 C -0.06 -1.31 4.81 -19.87 -0.10 -1.41 16 19 C -0.14 -2.72 9.14 22.27 0.20 -2.52 16 20 C -0.03 -0.54 9.47 22.27 0.21 -0.33 16 21 C -0.66 -10.70 5.66 22.27 0.13 -10.57 16 22 S 2.51 33.07 5.80 -56.49 -0.33 32.74 16 23 C -0.63 -1.99 10.80 113.37 1.22 -0.76 16 24 O -0.98 -19.71 17.13 -127.65 -2.19 -21.90 16 25 O -0.98 -19.55 17.13 -127.65 -2.19 -21.73 16 26 C -0.03 -0.52 9.47 22.27 0.21 -0.31 16 27 C -0.13 -2.50 9.35 22.27 0.21 -2.29 16 28 H 0.06 1.55 6.42 -2.39 -0.02 1.54 16 29 H 0.05 1.43 8.14 -2.38 -0.02 1.41 16 30 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.05 2.00 4.50 -2.39 -0.01 1.99 16 32 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 33 H 0.26 15.39 8.31 -92.71 -0.77 14.62 16 34 H 0.33 11.60 5.94 -89.69 -0.53 11.07 16 35 H 0.06 1.91 7.98 -2.39 -0.02 1.89 16 36 H 0.05 1.28 4.61 -2.38 -0.01 1.27 16 37 H 0.07 1.78 6.65 -2.39 -0.02 1.77 16 38 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.38 8.88 9.04 -74.06 -0.67 8.22 16 41 H 0.14 2.47 6.04 -2.91 -0.02 2.45 16 42 H 0.16 2.09 7.57 -2.91 -0.02 2.06 16 43 H 0.15 0.07 8.14 -2.39 -0.02 0.05 16 44 H 0.15 -0.03 8.14 -2.39 -0.02 -0.05 16 45 H 0.15 0.02 8.14 -2.39 -0.02 0.00 16 46 H 0.16 2.03 7.57 -2.91 -0.02 2.01 16 47 H 0.14 2.58 7.48 -2.91 -0.02 2.56 16 Total: -1.00 -80.99 380.73 -3.09 -84.08 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.37 Total: 29.25 kcal Atomic # 6 Polarization: -47.25 SS G_CDS: 4.56 Total: -42.69 kcal Atomic # 7 Polarization: -84.09 SS G_CDS: -2.58 Total: -86.67 kcal Atomic # 8 Polarization: -54.58 SS G_CDS: -6.15 Total: -60.73 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.77 Total: 44.02 kcal Atomic # 16 Polarization: 33.07 SS G_CDS: -0.33 Total: 32.74 kcal Total: -80.99 -3.09 -84.08 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846989147.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.771 kcal (2) G-P(sol) polarization free energy of solvation -80.988 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds