Wall clock time and date at job start Sat Apr 11 2020 06:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47307 * 2 1 4 4 H 1.09002 * 109.47104 * 185.16047 * 3 2 1 5 5 C 1.50701 * 109.47445 * 305.16331 * 3 2 1 6 6 H 1.07993 * 119.99897 * 119.99840 * 5 3 2 7 7 C 1.37879 * 119.99435 * 300.00002 * 5 3 2 8 8 N 1.31512 * 120.00453 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99365 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47265 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46725 * 120.00082 * 9 7 5 12 12 H 1.48505 * 109.46777 * 239.99858 * 9 7 5 13 13 N 1.46910 * 109.46925 * 65.16354 * 3 2 1 14 14 C 1.46895 * 110.99983 * 87.33227 * 13 3 2 15 15 C 1.52995 * 109.47104 * 173.88635 * 14 13 3 16 16 C 1.53003 * 109.47192 * 60.00068 * 15 14 13 17 17 O 1.42897 * 109.47089 * 299.99850 * 15 14 13 18 18 C 1.50703 * 109.47311 * 179.97438 * 15 14 13 19 19 C 1.38230 * 119.99716 * 329.72579 * 18 15 14 20 20 C 1.38245 * 119.99882 * 180.32409 * 19 18 15 21 21 C 1.38228 * 119.99626 * 359.94843 * 20 19 18 22 22 S 1.76205 * 119.99590 * 180.02562 * 21 20 19 23 23 C 1.81403 * 104.44983 * 270.01952 * 22 21 20 24 24 O 1.42095 * 104.27641 * 26.09539 * 22 21 20 25 25 O 1.42106 * 104.27624 * 153.95237 * 22 21 20 26 26 C 1.38235 * 120.00335 * 0.02783 * 21 20 19 27 27 C 1.38226 * 120.00089 * 359.97438 * 26 21 20 28 28 H 1.09006 * 109.46938 * 294.92123 * 1 2 3 29 29 H 1.09000 * 109.47366 * 54.90825 * 1 2 3 30 30 H 1.08994 * 109.47378 * 174.91695 * 1 2 3 31 31 H 1.08996 * 109.46900 * 239.99616 * 2 1 3 32 32 H 1.08997 * 109.46632 * 120.00331 * 2 1 3 33 33 H 0.96996 * 120.00247 * 180.02562 * 8 7 5 34 34 H 1.00896 * 110.99480 * 323.37557 * 13 3 2 35 35 H 1.09007 * 109.47408 * 53.88634 * 14 13 3 36 36 H 1.09004 * 109.47153 * 293.88527 * 14 13 3 37 37 H 1.08996 * 109.47039 * 180.02562 * 16 15 14 38 38 H 1.09005 * 109.46915 * 299.99842 * 16 15 14 39 39 H 1.08998 * 109.46814 * 59.99819 * 16 15 14 40 40 H 0.96702 * 114.00349 * 299.99971 * 17 15 14 41 41 H 1.08002 * 120.00649 * 0.27262 * 19 18 15 42 42 H 1.07996 * 119.99631 * 179.97438 * 20 19 18 43 43 H 1.09003 * 109.46901 * 60.00411 * 23 22 21 44 44 H 1.08997 * 109.46823 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.47715 * 300.00016 * 23 22 21 46 46 H 1.08003 * 119.99707 * 179.97438 * 26 21 20 47 47 H 1.08001 * 120.00338 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0924 5 6 1.4361 2.1889 -1.1615 6 1 0.8270 3.0628 -0.9838 7 6 1.6612 1.7560 -2.4511 8 7 2.4033 0.6920 -2.6675 9 14 0.9119 2.6809 -3.8908 10 1 0.1248 3.8333 -3.3832 11 1 1.9946 3.1734 -4.7800 12 1 0.0204 1.7707 -4.6537 13 7 1.6548 2.0980 1.2570 14 6 2.6603 1.8648 2.3021 15 6 2.3043 2.6839 3.5443 16 6 0.9270 2.2591 4.0578 17 8 2.2799 4.0725 3.2083 18 6 3.3355 2.4441 4.6168 19 6 3.9872 1.2272 4.6892 20 6 4.9283 1.0048 5.6771 21 6 5.2184 1.9998 6.5918 22 16 6.4185 1.7166 7.8505 23 6 5.4682 1.0333 9.2364 24 8 7.2777 0.7281 7.2995 25 8 6.9038 3.0135 8.1701 26 6 4.5670 3.2169 6.5190 27 6 3.6260 3.4392 5.5313 28 1 -0.3633 0.4331 0.9320 29 1 -0.3634 0.5908 -0.8409 30 1 -0.3634 -1.0235 -0.0910 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.5619 0.3877 -3.5748 34 1 0.7418 1.7927 1.5589 35 1 3.6416 2.1674 1.9363 36 1 2.6789 0.8055 2.5585 37 1 0.6732 2.8429 4.9425 38 1 0.1808 2.4322 3.2823 39 1 0.9457 1.1998 4.3141 40 1 3.1219 4.4114 2.8748 41 1 3.7606 0.4498 3.9746 42 1 5.4372 0.0540 5.7339 43 1 4.9816 0.1097 8.9229 44 1 6.1394 0.8253 10.0696 45 1 4.7126 1.7539 9.5493 46 1 4.7934 3.9941 7.2340 47 1 3.1167 4.3899 5.4746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000846989148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:53 Heat of formation + Delta-G solvation = -90.926308 kcal Electronic energy + Delta-G solvation = -27966.694141 eV Core-core repulsion = 24048.990136 eV Total energy + Delta-G solvation = -3917.704005 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.14431 -37.67250 -37.39781 -36.23418 -35.94699 -33.07816 -32.01641 -31.24628 -30.62822 -29.93700 -29.22253 -26.68407 -25.18560 -23.62207 -23.24003 -22.55923 -20.25583 -19.38483 -19.27592 -18.20156 -17.14675 -16.55293 -16.45444 -16.17602 -15.35076 -15.20586 -14.93221 -14.70018 -14.47862 -14.30690 -13.85478 -13.67523 -13.62127 -13.44903 -13.13123 -13.02773 -12.68124 -12.46865 -12.37682 -12.34030 -12.27332 -12.05131 -11.80601 -11.65489 -11.45739 -11.36369 -11.06461 -10.97259 -10.80837 -10.62512 -10.54330 -10.12279 -9.94392 -9.72793 -9.62027 -9.32301 -9.23798 -8.95842 -8.36584 -7.22639 -5.99426 -4.00589 -0.27634 0.57790 1.10599 2.54947 3.17948 3.30555 3.39065 3.44311 3.64452 3.78098 4.24243 4.34353 4.37690 4.45559 4.47164 4.67646 4.71070 5.04797 5.10499 5.19474 5.21749 5.26217 5.32521 5.42653 5.50992 5.70212 5.73872 5.83369 5.88203 5.97863 6.06458 6.12195 6.25352 6.27831 6.32433 6.36560 6.51940 6.62974 6.82514 7.21942 7.22112 7.46916 7.65182 7.84227 7.88047 8.24773 8.50076 8.58247 9.06015 9.63307 11.07709 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.002334 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.330070 B =11992.866529 C =12190.877135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.145 4.145 3 C 0.215 3.785 4 H 0.030 0.970 5 C -0.486 4.486 6 H 0.063 0.937 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.893 3.107 10 H -0.273 1.273 11 H -0.286 1.286 12 H -0.286 1.286 13 N -0.672 5.672 14 C 0.037 3.963 15 C 0.169 3.831 16 C -0.135 4.135 17 O -0.536 6.536 18 C -0.052 4.052 19 C -0.132 4.132 20 C -0.025 4.025 21 C -0.665 4.665 22 S 2.502 3.498 23 C -0.651 4.651 24 O -0.938 6.938 25 O -0.940 6.940 26 C -0.027 4.027 27 C -0.125 4.125 28 H 0.026 0.974 29 H 0.070 0.930 30 H 0.023 0.977 31 H 0.093 0.907 32 H 0.008 0.992 33 H 0.258 0.742 34 H 0.328 0.672 35 H 0.069 0.931 36 H 0.028 0.972 37 H 0.060 0.940 38 H 0.079 0.921 39 H 0.065 0.935 40 H 0.376 0.624 41 H 0.138 0.862 42 H 0.141 0.859 43 H 0.132 0.868 44 H 0.130 0.870 45 H 0.131 0.869 46 H 0.140 0.860 47 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.894 -0.426 23.669 23.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.185 4.185 3 C 0.107 3.893 4 H 0.048 0.952 5 C -0.524 4.524 6 H 0.081 0.919 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.721 3.279 10 H -0.197 1.197 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.304 5.304 14 C -0.093 4.093 15 C 0.127 3.873 16 C -0.192 4.192 17 O -0.341 6.341 18 C -0.053 4.053 19 C -0.151 4.151 20 C -0.044 4.044 21 C -0.752 4.752 22 S 2.682 3.318 23 C -0.800 4.800 24 O -0.936 6.936 25 O -0.937 6.937 26 C -0.046 4.046 27 C -0.144 4.144 28 H 0.045 0.955 29 H 0.089 0.911 30 H 0.042 0.958 31 H 0.111 0.889 32 H 0.027 0.973 33 H 0.068 0.932 34 H 0.147 0.853 35 H 0.088 0.912 36 H 0.046 0.954 37 H 0.079 0.921 38 H 0.098 0.902 39 H 0.084 0.916 40 H 0.224 0.776 41 H 0.156 0.844 42 H 0.159 0.841 43 H 0.150 0.850 44 H 0.149 0.851 45 H 0.150 0.850 46 H 0.158 0.842 47 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 3.467 0.193 23.470 23.726 hybrid contribution -0.758 -0.752 -0.934 1.419 sum 2.709 -0.560 22.536 22.705 Atomic orbital electron populations 1.21600 0.97639 0.98705 1.00796 1.22110 0.95058 1.01130 1.00184 1.19240 0.95843 0.88545 0.85622 0.95180 1.21102 1.30358 1.11436 0.89547 0.91886 1.24921 0.95576 0.95181 0.98779 1.69883 1.39119 1.24090 1.20607 0.86521 0.78966 0.79899 0.82518 1.19719 1.21220 1.21266 1.60728 1.03268 1.63124 1.03279 1.22596 0.98029 0.96409 0.92285 1.20136 0.93190 0.83423 0.90506 1.21719 0.94977 1.00650 1.01869 1.86537 1.39016 1.22299 1.86224 1.21155 0.94842 0.93755 0.95526 1.21379 0.96848 0.97823 0.99041 1.20936 0.93831 0.97611 0.92003 1.30424 1.22202 1.02674 1.19920 1.05070 0.75443 0.75075 0.76259 1.30230 1.16209 1.14077 1.19516 1.93591 1.61829 1.61589 1.76565 1.93584 1.77544 1.38022 1.84551 1.20919 0.92121 0.94413 0.97143 1.21188 0.98375 1.00086 0.94742 0.95473 0.91139 0.95750 0.88860 0.97289 0.93182 0.85315 0.91246 0.95438 0.92115 0.90215 0.91558 0.77627 0.84450 0.84145 0.84964 0.85112 0.84994 0.84227 0.84281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.67 9.41 37.16 0.35 -2.32 16 2 C -0.15 -3.27 5.52 -26.73 -0.15 -3.42 16 3 C 0.22 5.11 2.34 -68.86 -0.16 4.95 16 4 H 0.03 0.80 7.66 -51.93 -0.40 0.40 16 5 C -0.49 -12.86 7.25 -34.44 -0.25 -13.11 16 6 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 7 C 0.06 1.50 5.28 -17.82 -0.09 1.41 16 8 N -0.90 -24.96 11.38 55.43 0.63 -24.33 16 9 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 10 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 12 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 13 N -0.67 -13.33 5.99 -107.95 -0.65 -13.97 16 14 C 0.04 0.61 4.01 -3.83 -0.02 0.59 16 15 C 0.17 2.27 0.99 -91.77 -0.09 2.18 16 16 C -0.13 -1.68 8.49 37.16 0.32 -1.37 16 17 O -0.54 -7.71 11.83 -35.23 -0.42 -8.12 16 18 C -0.05 -0.61 4.80 -104.62 -0.50 -1.12 16 19 C -0.13 -1.51 9.14 -39.58 -0.36 -1.87 16 20 C -0.02 -0.26 9.47 -39.58 -0.37 -0.63 16 21 C -0.66 -6.36 5.66 -39.59 -0.22 -6.58 16 22 S 2.50 20.02 5.80 -107.50 -0.62 19.40 16 23 C -0.65 -2.36 10.80 101.05 1.09 -1.27 16 24 O -0.94 -10.70 17.13 -57.54 -0.99 -11.69 16 25 O -0.94 -10.43 17.13 -57.54 -0.99 -11.42 16 26 C -0.03 -0.26 9.47 -39.59 -0.37 -0.64 16 27 C -0.13 -1.34 9.35 -39.59 -0.37 -1.71 16 28 H 0.03 0.49 6.62 -51.93 -0.34 0.15 16 29 H 0.07 1.61 6.86 -51.93 -0.36 1.25 16 30 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 2.39 6.23 -51.93 -0.32 2.07 16 32 H 0.01 0.18 7.62 -51.93 -0.40 -0.22 16 33 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 34 H 0.33 6.23 4.93 -39.29 -0.19 6.03 16 35 H 0.07 1.20 7.90 -51.92 -0.41 0.79 16 36 H 0.03 0.43 6.02 -51.93 -0.31 0.12 16 37 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 38 H 0.08 1.10 6.72 -51.93 -0.35 0.75 16 39 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 40 H 0.38 4.66 9.04 45.56 0.41 5.08 16 41 H 0.14 1.52 6.17 -52.49 -0.32 1.20 16 42 H 0.14 1.20 7.57 -52.49 -0.40 0.80 16 43 H 0.13 0.32 8.14 -51.92 -0.42 -0.10 16 44 H 0.13 0.28 8.14 -51.93 -0.42 -0.14 16 45 H 0.13 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.14 1.08 7.57 -52.48 -0.40 0.68 16 47 H 0.14 1.37 7.48 -52.49 -0.39 0.97 16 LS Contribution 385.46 15.07 5.81 5.81 Total: -1.00 -33.96 385.46 -9.71 -43.68 By element: Atomic # 1 Polarization: 15.67 SS G_CDS: -6.26 Total: 9.41 kcal Atomic # 6 Polarization: -23.70 SS G_CDS: -1.21 Total: -24.91 kcal Atomic # 7 Polarization: -38.29 SS G_CDS: -0.02 Total: -38.31 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -2.39 Total: -31.22 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 20.02 SS G_CDS: -0.62 Total: 19.40 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.96 -9.71 -43.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846989148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.251 kcal (2) G-P(sol) polarization free energy of solvation -33.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.213 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds