Wall clock time and date at job start Sat Apr 11 2020 06:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47307 * 2 1 4 4 H 1.09002 * 109.47104 * 185.16047 * 3 2 1 5 5 C 1.50701 * 109.47445 * 305.16331 * 3 2 1 6 6 H 1.07993 * 119.99897 * 119.99840 * 5 3 2 7 7 C 1.37879 * 119.99435 * 300.00002 * 5 3 2 8 8 N 1.31512 * 120.00453 * 359.97438 * 7 5 3 9 9 Si 1.86803 * 119.99365 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47265 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.46725 * 120.00082 * 9 7 5 12 12 H 1.48505 * 109.46777 * 239.99858 * 9 7 5 13 13 N 1.46910 * 109.46925 * 65.16354 * 3 2 1 14 14 C 1.46895 * 110.99983 * 87.33227 * 13 3 2 15 15 C 1.52995 * 109.47104 * 173.88635 * 14 13 3 16 16 C 1.53003 * 109.47192 * 60.00068 * 15 14 13 17 17 O 1.42897 * 109.47089 * 299.99850 * 15 14 13 18 18 C 1.50703 * 109.47311 * 179.97438 * 15 14 13 19 19 C 1.38230 * 119.99716 * 329.72579 * 18 15 14 20 20 C 1.38245 * 119.99882 * 180.32409 * 19 18 15 21 21 C 1.38228 * 119.99626 * 359.94843 * 20 19 18 22 22 S 1.76205 * 119.99590 * 180.02562 * 21 20 19 23 23 C 1.81403 * 104.44983 * 270.01952 * 22 21 20 24 24 O 1.42095 * 104.27641 * 26.09539 * 22 21 20 25 25 O 1.42106 * 104.27624 * 153.95237 * 22 21 20 26 26 C 1.38235 * 120.00335 * 0.02783 * 21 20 19 27 27 C 1.38226 * 120.00089 * 359.97438 * 26 21 20 28 28 H 1.09006 * 109.46938 * 294.92123 * 1 2 3 29 29 H 1.09000 * 109.47366 * 54.90825 * 1 2 3 30 30 H 1.08994 * 109.47378 * 174.91695 * 1 2 3 31 31 H 1.08996 * 109.46900 * 239.99616 * 2 1 3 32 32 H 1.08997 * 109.46632 * 120.00331 * 2 1 3 33 33 H 0.96996 * 120.00247 * 180.02562 * 8 7 5 34 34 H 1.00896 * 110.99480 * 323.37557 * 13 3 2 35 35 H 1.09007 * 109.47408 * 53.88634 * 14 13 3 36 36 H 1.09004 * 109.47153 * 293.88527 * 14 13 3 37 37 H 1.08996 * 109.47039 * 180.02562 * 16 15 14 38 38 H 1.09005 * 109.46915 * 299.99842 * 16 15 14 39 39 H 1.08998 * 109.46814 * 59.99819 * 16 15 14 40 40 H 0.96702 * 114.00349 * 299.99971 * 17 15 14 41 41 H 1.08002 * 120.00649 * 0.27262 * 19 18 15 42 42 H 1.07996 * 119.99631 * 179.97438 * 20 19 18 43 43 H 1.09003 * 109.46901 * 60.00411 * 23 22 21 44 44 H 1.08997 * 109.46823 * 179.97438 * 23 22 21 45 45 H 1.08995 * 109.47715 * 300.00016 * 23 22 21 46 46 H 1.08003 * 119.99707 * 179.97438 * 26 21 20 47 47 H 1.08001 * 120.00338 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4438 -0.0924 5 6 1.4361 2.1889 -1.1615 6 1 0.8270 3.0628 -0.9838 7 6 1.6612 1.7560 -2.4511 8 7 2.4033 0.6920 -2.6675 9 14 0.9119 2.6809 -3.8908 10 1 0.1248 3.8333 -3.3832 11 1 1.9946 3.1734 -4.7800 12 1 0.0204 1.7707 -4.6537 13 7 1.6548 2.0980 1.2570 14 6 2.6603 1.8648 2.3021 15 6 2.3043 2.6839 3.5443 16 6 0.9270 2.2591 4.0578 17 8 2.2799 4.0725 3.2083 18 6 3.3355 2.4441 4.6168 19 6 3.9872 1.2272 4.6892 20 6 4.9283 1.0048 5.6771 21 6 5.2184 1.9998 6.5918 22 16 6.4185 1.7166 7.8505 23 6 5.4682 1.0333 9.2364 24 8 7.2777 0.7281 7.2995 25 8 6.9038 3.0135 8.1701 26 6 4.5670 3.2169 6.5190 27 6 3.6260 3.4392 5.5313 28 1 -0.3633 0.4331 0.9320 29 1 -0.3634 0.5908 -0.8409 30 1 -0.3634 -1.0235 -0.0910 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8900 33 1 2.5619 0.3877 -3.5748 34 1 0.7418 1.7927 1.5589 35 1 3.6416 2.1674 1.9363 36 1 2.6789 0.8055 2.5585 37 1 0.6732 2.8429 4.9425 38 1 0.1808 2.4322 3.2823 39 1 0.9457 1.1998 4.3141 40 1 3.1219 4.4114 2.8748 41 1 3.7606 0.4498 3.9746 42 1 5.4372 0.0540 5.7339 43 1 4.9816 0.1097 8.9229 44 1 6.1394 0.8253 10.0696 45 1 4.7126 1.7539 9.5493 46 1 4.7934 3.9941 7.2340 47 1 3.1167 4.3899 5.4746 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000846989148.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:52 Heat of formation + Delta-G solvation = -117.144179 kcal Electronic energy + Delta-G solvation = -27967.831033 eV Core-core repulsion = 24048.990136 eV Total energy + Delta-G solvation = -3918.840897 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.08361 -38.86460 -38.13335 -37.50822 -36.96148 -34.57286 -33.48893 -32.21340 -31.94970 -30.51553 -30.12291 -28.42104 -26.58332 -25.20869 -24.37829 -23.51643 -21.42153 -21.07716 -20.00262 -18.97681 -18.39486 -17.97665 -17.14282 -17.08327 -16.85690 -16.45945 -16.21508 -15.84204 -15.52410 -15.51459 -15.06000 -14.63712 -14.54514 -14.25812 -14.11837 -14.00522 -13.92039 -13.81640 -13.56597 -13.29582 -13.19943 -13.13539 -13.02922 -12.86340 -12.78202 -12.64153 -12.44344 -12.29090 -12.13320 -11.98271 -11.87981 -11.66754 -11.55391 -11.42049 -11.14990 -10.77416 -10.43522 -10.17844 -10.04329 -8.86083 -8.05756 -6.13378 -0.84900 -0.23495 0.29434 1.40527 1.43964 1.54868 1.92510 2.39291 2.45362 3.05082 3.17537 3.19965 3.23488 3.40020 3.77855 3.90028 3.93068 3.98805 4.09653 4.13347 4.21853 4.33851 4.49547 4.53666 4.57830 4.64860 4.69648 4.71437 4.79519 4.87596 4.92608 4.97793 4.98374 5.07086 5.09468 5.12427 5.27047 5.36865 5.42346 5.45335 5.70841 5.75015 5.82332 5.84211 6.32852 6.68368 6.76825 6.90161 7.00510 7.54544 8.99617 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.021594 B = 0.002334 C = 0.002296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.330070 B =11992.866529 C =12190.877135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.138 4.138 3 C 0.222 3.778 4 H -0.006 1.006 5 C -0.495 4.495 6 H 0.051 0.949 7 C 0.013 3.987 8 N -0.921 5.921 9 Si 0.949 3.051 10 H -0.270 1.270 11 H -0.286 1.286 12 H -0.281 1.281 13 N -0.676 5.676 14 C 0.040 3.960 15 C 0.178 3.822 16 C -0.134 4.134 17 O -0.548 6.548 18 C -0.063 4.063 19 C -0.144 4.144 20 C -0.033 4.033 21 C -0.664 4.664 22 S 2.507 3.493 23 C -0.623 4.623 24 O -0.980 6.980 25 O -0.976 6.976 26 C -0.030 4.030 27 C -0.128 4.128 28 H 0.050 0.950 29 H 0.044 0.956 30 H 0.042 0.958 31 H 0.060 0.940 32 H 0.027 0.973 33 H 0.258 0.742 34 H 0.334 0.666 35 H 0.051 0.949 36 H 0.037 0.963 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.080 0.920 40 H 0.382 0.618 41 H 0.135 0.865 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.154 0.846 45 H 0.155 0.845 46 H 0.160 0.840 47 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.943 -0.623 26.276 26.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.178 4.178 3 C 0.113 3.887 4 H 0.011 0.989 5 C -0.533 4.533 6 H 0.069 0.931 7 C -0.185 4.185 8 N -0.562 5.562 9 Si 0.776 3.224 10 H -0.194 1.194 11 H -0.212 1.212 12 H -0.207 1.207 13 N -0.308 5.308 14 C -0.090 4.090 15 C 0.137 3.863 16 C -0.191 4.191 17 O -0.354 6.354 18 C -0.064 4.064 19 C -0.163 4.163 20 C -0.051 4.051 21 C -0.749 4.749 22 S 2.690 3.310 23 C -0.777 4.777 24 O -0.977 6.977 25 O -0.974 6.974 26 C -0.049 4.049 27 C -0.147 4.147 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.067 0.933 34 H 0.154 0.846 35 H 0.070 0.930 36 H 0.055 0.945 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.099 0.901 40 H 0.230 0.770 41 H 0.153 0.847 42 H 0.172 0.828 43 H 0.171 0.829 44 H 0.173 0.827 45 H 0.173 0.827 46 H 0.177 0.823 47 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.525 0.022 26.043 26.165 hybrid contribution -0.417 -0.710 -1.610 1.808 sum 2.108 -0.688 24.433 24.533 Atomic orbital electron populations 1.21487 0.95878 0.99642 1.00904 1.21951 0.96555 0.99906 0.99411 1.18963 0.93353 0.89466 0.86896 0.98851 1.21306 1.30055 1.11164 0.90822 0.93119 1.25574 0.96028 0.95908 1.01007 1.70010 1.40111 1.25178 1.20918 0.85640 0.78191 0.78861 0.79733 1.19449 1.21221 1.20724 1.60571 1.04380 1.62827 1.03035 1.22617 0.96210 0.97627 0.92538 1.20005 0.94466 0.82347 0.89524 1.21740 0.93731 1.01833 1.01839 1.86513 1.39753 1.22827 1.86347 1.20951 0.95192 0.94504 0.95746 1.21437 0.97503 0.97764 0.99574 1.21135 0.93629 0.98564 0.91812 1.30698 1.21622 1.02366 1.20256 1.04841 0.75265 0.73983 0.76881 1.30021 1.16152 1.15033 1.16455 1.93540 1.63862 1.62059 1.78223 1.93537 1.78773 1.40040 1.85010 1.21193 0.91586 0.94958 0.97159 1.21296 0.98674 0.99998 0.94690 0.93119 0.93708 0.93864 0.92141 0.95452 0.93282 0.84582 0.93002 0.94538 0.90775 0.91659 0.90148 0.76965 0.84707 0.82846 0.82921 0.82749 0.82675 0.82287 0.83591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.90 9.41 71.98 0.68 -4.22 16 2 C -0.14 -6.28 5.52 30.59 0.17 -6.11 16 3 C 0.22 10.79 2.34 44.17 0.10 10.89 16 4 H -0.01 -0.36 7.66 -2.39 -0.02 -0.38 16 5 C -0.49 -26.73 7.25 25.60 0.19 -26.54 16 6 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 7 C 0.01 0.70 5.28 84.66 0.45 1.14 16 8 N -0.92 -52.46 11.38 21.45 0.24 -52.22 16 9 Si 0.95 43.93 29.54 68.60 2.03 45.96 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 N -0.68 -27.01 5.99 -495.43 -2.97 -29.98 16 14 C 0.04 1.32 4.01 86.30 0.35 1.67 16 15 C 0.18 4.69 0.99 -11.54 -0.01 4.67 16 16 C -0.13 -3.15 8.49 71.98 0.61 -2.54 16 17 O -0.55 -15.60 11.83 -148.98 -1.76 -17.36 16 18 C -0.06 -1.44 4.80 -19.87 -0.10 -1.54 16 19 C -0.14 -3.20 9.14 22.27 0.20 -2.99 16 20 C -0.03 -0.64 9.47 22.27 0.21 -0.43 16 21 C -0.66 -11.67 5.66 22.27 0.13 -11.54 16 22 S 2.51 35.88 5.80 -56.49 -0.33 35.56 16 23 C -0.62 -1.85 10.80 113.37 1.22 -0.63 16 24 O -0.98 -21.62 17.13 -127.65 -2.19 -23.80 16 25 O -0.98 -20.57 17.13 -127.65 -2.19 -22.76 16 26 C -0.03 -0.54 9.47 22.27 0.21 -0.33 16 27 C -0.13 -2.57 9.35 22.27 0.21 -2.36 16 28 H 0.05 1.77 6.62 -2.38 -0.02 1.75 16 29 H 0.04 2.02 6.86 -2.39 -0.02 2.01 16 30 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.06 3.16 6.23 -2.39 -0.01 3.15 16 32 H 0.03 1.10 7.62 -2.39 -0.02 1.09 16 33 H 0.26 14.10 8.31 -92.71 -0.77 13.33 16 34 H 0.33 12.52 4.93 -89.70 -0.44 12.07 16 35 H 0.05 1.86 7.90 -2.38 -0.02 1.85 16 36 H 0.04 1.14 6.02 -2.38 -0.01 1.12 16 37 H 0.07 1.53 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.72 6.72 -2.38 -0.02 1.70 16 39 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 40 H 0.38 9.58 9.04 -74.06 -0.67 8.91 16 41 H 0.14 2.95 6.17 -2.91 -0.02 2.93 16 42 H 0.15 2.47 7.57 -2.91 -0.02 2.45 16 43 H 0.15 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.15 -0.08 8.14 -2.39 -0.02 -0.10 16 45 H 0.15 -0.09 8.14 -2.39 -0.02 -0.11 16 46 H 0.16 2.13 7.57 -2.91 -0.02 2.11 16 47 H 0.15 2.67 7.48 -2.91 -0.02 2.64 16 Total: -1.00 -74.90 385.46 -2.66 -77.56 By element: Atomic # 1 Polarization: 28.01 SS G_CDS: -0.12 Total: 27.90 kcal Atomic # 6 Polarization: -45.46 SS G_CDS: 4.62 Total: -40.85 kcal Atomic # 7 Polarization: -79.47 SS G_CDS: -2.72 Total: -82.20 kcal Atomic # 8 Polarization: -57.79 SS G_CDS: -6.13 Total: -63.93 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.96 kcal Atomic # 16 Polarization: 35.88 SS G_CDS: -0.33 Total: 35.56 kcal Total: -74.90 -2.66 -77.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000846989148.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.583 kcal (2) G-P(sol) polarization free energy of solvation -74.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.562 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds