Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47017 * 2 1 4 4 H 1.09002 * 109.46865 * 55.00209 * 3 2 1 5 5 C 1.50700 * 109.47024 * 174.99635 * 3 2 1 6 6 H 1.07998 * 119.99892 * 119.99873 * 5 3 2 7 7 C 1.37876 * 120.00462 * 300.00731 * 5 3 2 8 8 N 1.31512 * 120.00356 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99805 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47056 * 90.00208 * 9 7 5 11 11 H 1.48491 * 109.47271 * 210.00470 * 9 7 5 12 12 H 1.48507 * 109.47243 * 330.00377 * 9 7 5 13 13 N 1.46499 * 109.47564 * 295.00007 * 3 2 1 14 14 C 1.34781 * 119.99874 * 84.99851 * 13 3 2 15 15 O 1.21279 * 119.99905 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99900 * 180.02562 * 14 13 3 17 17 N 1.46495 * 109.47278 * 180.02562 * 16 14 13 18 18 C 1.34010 * 125.11988 * 125.00166 * 17 16 14 19 19 C 1.38393 * 107.83805 * 180.02562 * 18 17 16 20 20 C 1.46488 * 126.86603 * 180.02562 * 19 18 17 21 21 O 1.21334 * 119.99977 * 179.97438 * 20 19 18 22 22 C 1.46809 * 106.26713 * 359.97438 * 19 18 17 23 23 C 1.48265 * 126.52625 * 180.02562 * 22 19 18 24 24 C 1.39400 * 120.12518 * 145.00223 * 23 22 19 25 25 C 1.37998 * 119.87179 * 179.97438 * 24 23 22 26 26 C 1.38335 * 120.12799 * 359.97438 * 25 24 23 27 27 C 1.38335 * 120.25383 * 0.02562 * 26 25 24 28 28 C 1.38002 * 120.12751 * 359.97438 * 27 26 25 29 29 N 1.31302 * 106.94591 * 0.26588 * 22 19 18 30 30 H 1.08995 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47132 * 300.00371 * 1 2 3 32 32 H 1.09010 * 109.46877 * 59.99554 * 1 2 3 33 33 H 1.08996 * 109.46719 * 240.00234 * 2 1 3 34 34 H 1.08999 * 109.46584 * 120.00064 * 2 1 3 35 35 H 0.97002 * 120.00001 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00104 * 265.00309 * 13 3 2 37 37 H 1.09000 * 109.47078 * 59.99582 * 16 14 13 38 38 H 1.08999 * 109.46962 * 300.00371 * 16 14 13 39 39 H 1.08004 * 126.08121 * 0.04732 * 18 17 16 40 40 H 1.07999 * 120.00094 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.06250 * 359.95322 * 24 23 22 42 42 H 1.08001 * 119.94033 * 180.02562 * 25 24 23 43 43 H 1.07998 * 119.87264 * 179.72362 * 26 25 24 44 44 H 1.08001 * 119.93428 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.06644 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8795 1.3359 9 14 3.0963 0.1098 2.5707 10 1 2.8745 -1.3262 2.2644 11 1 3.7940 0.2357 3.8754 12 1 1.7880 0.8091 2.6395 13 7 1.6525 2.0976 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3392 2.6327 -0.4340 16 6 0.0363 3.3378 -2.6547 17 7 -1.3221 3.8711 -2.5266 18 6 -1.6739 5.1455 -2.7458 19 6 -3.0353 5.2539 -2.5222 20 6 -3.8522 6.4639 -2.6430 21 8 -5.0432 6.4169 -2.4163 22 6 -3.4975 3.9136 -2.1410 23 6 -4.8869 3.5225 -1.8022 24 6 -5.3646 2.2613 -2.1552 25 6 -6.6585 1.9025 -1.8367 26 6 -7.4810 2.7915 -1.1681 27 6 -7.0124 4.0443 -0.8153 28 6 -5.7202 4.4140 -1.1285 29 7 -2.4452 3.1284 -2.1523 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.8771 0.4809 2.1125 36 1 2.2720 2.1232 -1.9977 37 1 0.0674 2.6132 -3.4684 38 1 0.7277 4.1531 -2.8677 39 1 -1.0126 5.9456 -3.0441 40 1 -3.3943 7.3978 -2.9337 41 1 -4.7233 1.5665 -2.6771 42 1 -7.0295 0.9256 -2.1093 43 1 -8.4943 2.5080 -0.9249 44 1 -7.6588 4.7341 -0.2930 45 1 -5.3556 5.3926 -0.8530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867419090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = 45.455064 kcal Electronic energy + Delta-G solvation = -28964.464813 eV Core-core repulsion = 24949.523548 eV Total energy + Delta-G solvation = -4014.941265 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.33748 -39.43427 -38.82422 -38.42699 -35.51605 -33.76407 -32.53430 -31.79092 -31.14721 -30.88396 -30.38405 -28.13817 -26.96212 -24.22139 -23.18413 -22.66887 -22.55754 -21.09703 -20.57555 -19.88443 -19.57490 -17.71424 -17.53034 -16.56827 -16.28532 -16.25734 -15.65252 -15.58210 -15.16760 -14.89555 -14.79201 -14.50253 -14.21577 -14.01237 -13.69565 -13.37072 -13.22815 -13.14404 -12.97491 -12.77436 -12.57378 -12.22431 -11.92647 -11.77457 -11.38604 -11.23021 -11.13199 -10.98336 -10.75414 -10.68802 -10.14270 -9.99887 -9.74459 -9.61170 -9.33982 -9.27711 -8.89203 -8.84442 -8.82456 -8.33720 -8.22401 -6.29571 -4.32944 0.92153 1.17621 1.47200 2.04464 2.26954 2.93674 3.07160 3.18386 3.30702 3.35554 3.59184 3.87808 4.08057 4.24506 4.32521 4.47976 4.61487 4.88458 4.91594 4.96856 5.01096 5.04500 5.07310 5.18965 5.31346 5.44496 5.62270 5.64192 5.86381 5.92033 5.98344 6.07683 6.12877 6.16883 6.49784 6.51353 6.55817 6.59215 6.61650 6.66044 6.76828 6.91099 6.97006 7.12690 7.20092 7.39947 7.43008 7.55804 7.99264 8.36468 8.63056 8.74439 9.30874 10.82217 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.002745 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.148494 B =10196.689978 C =11223.894367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.139 4.139 3 C 0.246 3.754 4 H 0.049 0.951 5 C -0.538 4.538 6 H 0.081 0.919 7 C 0.080 3.920 8 N -0.890 5.890 9 Si 0.882 3.118 10 H -0.275 1.275 11 H -0.293 1.293 12 H -0.261 1.261 13 N -0.697 5.697 14 C 0.488 3.512 15 O -0.517 6.517 16 C 0.103 3.897 17 N -0.338 5.338 18 C 0.124 3.876 19 C -0.342 4.342 20 C 0.412 3.588 21 O -0.470 6.470 22 C 0.155 3.845 23 C -0.022 4.022 24 C -0.087 4.087 25 C -0.133 4.133 26 C -0.110 4.110 27 C -0.131 4.131 28 C -0.059 4.059 29 N -0.246 5.246 30 H 0.031 0.969 31 H 0.051 0.949 32 H 0.053 0.947 33 H 0.059 0.941 34 H 0.054 0.946 35 H 0.268 0.732 36 H 0.396 0.604 37 H 0.116 0.884 38 H 0.128 0.872 39 H 0.190 0.810 40 H 0.100 0.900 41 H 0.123 0.877 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.122 0.878 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 8.530 -11.631 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.177 4.177 3 C 0.143 3.857 4 H 0.067 0.933 5 C -0.576 4.576 6 H 0.099 0.901 7 C -0.124 4.124 8 N -0.527 5.527 9 Si 0.712 3.288 10 H -0.202 1.202 11 H -0.221 1.221 12 H -0.185 1.185 13 N -0.347 5.347 14 C 0.270 3.730 15 O -0.392 6.392 16 C -0.022 4.022 17 N -0.115 5.115 18 C -0.026 4.026 19 C -0.355 4.355 20 C 0.272 3.728 21 O -0.345 6.345 22 C -0.014 4.014 23 C -0.024 4.024 24 C -0.107 4.107 25 C -0.151 4.151 26 C -0.129 4.129 27 C -0.149 4.149 28 C -0.079 4.079 29 N -0.064 5.064 30 H 0.050 0.950 31 H 0.070 0.930 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.073 0.927 35 H 0.078 0.922 36 H 0.229 0.771 37 H 0.134 0.866 38 H 0.146 0.854 39 H 0.207 0.793 40 H 0.116 0.884 41 H 0.141 0.859 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.140 0.860 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -17.654 7.167 -10.532 21.770 hybrid contribution 0.161 0.208 0.185 0.322 sum -17.493 7.375 -10.347 21.621 Atomic orbital electron populations 1.21862 0.96672 0.99142 1.02344 1.22293 0.94462 0.99804 1.01158 1.19166 0.95659 0.88524 0.82376 0.93334 1.21010 0.88451 1.40150 1.07948 0.90138 1.24818 0.94861 0.95046 0.97655 1.69856 1.08680 1.44279 1.29877 0.86917 0.80931 0.80048 0.80945 1.20154 1.22074 1.18520 1.46108 1.14259 1.55944 1.18350 1.20175 0.83359 0.80622 0.88874 1.90792 1.50720 1.58334 1.39395 1.21821 0.78912 1.01932 0.99569 1.47834 1.07477 1.06366 1.49835 1.23144 0.95679 0.87932 0.95843 1.22302 0.93816 0.97012 1.22349 1.22845 0.87795 0.90067 0.72082 1.90515 1.17856 1.87810 1.38299 1.22018 0.92455 0.90458 0.96460 1.17680 0.88970 0.94718 1.01080 1.21203 0.95689 0.94952 0.98808 1.21001 0.93976 0.99809 1.00330 1.21229 0.99569 0.94052 0.98037 1.21050 0.95902 0.96594 1.01359 1.21481 0.93038 0.98763 0.94574 1.77574 0.91145 1.18342 1.19343 0.94969 0.93012 0.92786 0.92269 0.92742 0.92178 0.77095 0.86564 0.85449 0.79293 0.88359 0.85865 0.85973 0.86218 0.85954 0.84440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.52 37.16 0.32 -2.58 16 2 C -0.14 -2.99 5.11 -26.73 -0.14 -3.13 16 3 C 0.25 5.51 1.83 -69.08 -0.13 5.38 16 4 H 0.05 1.23 6.63 -51.93 -0.34 0.89 16 5 C -0.54 -13.82 9.31 -34.44 -0.32 -14.14 16 6 H 0.08 2.15 7.98 -52.49 -0.42 1.73 16 7 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 8 N -0.89 -25.67 13.96 55.43 0.77 -24.90 16 9 Si 0.88 21.41 24.41 -169.99 -4.15 17.27 16 10 H -0.27 -6.49 6.83 56.52 0.39 -6.11 16 11 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 12 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 13 N -0.70 -12.13 5.02 -54.93 -0.28 -12.40 16 14 C 0.49 8.01 6.42 -10.98 -0.07 7.94 16 15 O -0.52 -10.85 12.79 5.56 0.07 -10.77 16 16 C 0.10 1.09 6.93 -5.20 -0.04 1.05 16 17 N -0.34 -4.27 3.36 -61.96 -0.21 -4.48 16 18 C 0.12 1.18 11.39 -16.54 -0.19 0.99 16 19 C -0.34 -3.99 6.26 -103.05 -0.64 -4.64 16 20 C 0.41 4.00 11.56 34.05 0.39 4.40 16 21 O -0.47 -6.07 13.27 5.51 0.07 -5.99 16 22 C 0.16 2.33 6.94 -80.51 -0.56 1.77 16 23 C -0.02 -0.33 5.73 -104.91 -0.60 -0.93 16 24 C -0.09 -1.17 9.76 -39.24 -0.38 -1.56 16 25 C -0.13 -1.52 10.03 -39.63 -0.40 -1.92 16 26 C -0.11 -1.19 10.04 -39.51 -0.40 -1.59 16 27 C -0.13 -1.53 10.03 -39.63 -0.40 -1.93 16 28 C -0.06 -0.81 7.79 -39.24 -0.31 -1.12 16 29 N -0.25 -3.96 11.46 34.61 0.40 -3.57 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.13 7.85 -51.93 -0.41 0.73 16 32 H 0.05 1.08 5.65 -51.92 -0.29 0.78 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.05 1.25 3.22 -51.93 -0.17 1.09 16 35 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.40 5.70 8.54 -40.82 -0.35 5.35 16 37 H 0.12 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.13 0.80 8.04 -51.93 -0.42 0.38 16 39 H 0.19 0.78 8.06 -52.48 -0.42 0.35 16 40 H 0.10 0.51 8.06 -52.49 -0.42 0.09 16 41 H 0.12 1.61 8.06 -52.49 -0.42 1.18 16 42 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 43 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 44 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 45 H 0.14 1.90 5.65 -52.49 -0.30 1.60 16 LS Contribution 372.48 15.07 5.61 5.61 Total: -1.00 -36.04 372.48 -7.34 -43.38 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: -5.68 Total: 5.77 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -3.95 Total: -9.91 kcal Atomic # 7 Polarization: -46.03 SS G_CDS: 0.69 Total: -45.35 kcal Atomic # 8 Polarization: -16.91 SS G_CDS: 0.14 Total: -16.77 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.15 Total: 17.27 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -36.04 -7.34 -43.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867419090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.832 kcal (2) G-P(sol) polarization free energy of solvation -36.036 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds