Wall clock time and date at job start Sat Apr 11 2020 06:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53000 * 109.47017 * 2 1 4 4 H 1.09002 * 109.46865 * 55.00209 * 3 2 1 5 5 C 1.50700 * 109.47024 * 174.99635 * 3 2 1 6 6 H 1.07998 * 119.99892 * 119.99873 * 5 3 2 7 7 C 1.37876 * 120.00462 * 300.00731 * 5 3 2 8 8 N 1.31512 * 120.00356 * 179.97438 * 7 5 3 9 9 Si 1.86805 * 119.99805 * 359.97438 * 7 5 3 10 10 H 1.48499 * 109.47056 * 90.00208 * 9 7 5 11 11 H 1.48491 * 109.47271 * 210.00470 * 9 7 5 12 12 H 1.48507 * 109.47243 * 330.00377 * 9 7 5 13 13 N 1.46499 * 109.47564 * 295.00007 * 3 2 1 14 14 C 1.34781 * 119.99874 * 84.99851 * 13 3 2 15 15 O 1.21279 * 119.99905 * 0.02562 * 14 13 3 16 16 C 1.50697 * 119.99900 * 180.02562 * 14 13 3 17 17 N 1.46495 * 109.47278 * 180.02562 * 16 14 13 18 18 C 1.34010 * 125.11988 * 125.00166 * 17 16 14 19 19 C 1.38393 * 107.83805 * 180.02562 * 18 17 16 20 20 C 1.46488 * 126.86603 * 180.02562 * 19 18 17 21 21 O 1.21334 * 119.99977 * 179.97438 * 20 19 18 22 22 C 1.46809 * 106.26713 * 359.97438 * 19 18 17 23 23 C 1.48265 * 126.52625 * 180.02562 * 22 19 18 24 24 C 1.39400 * 120.12518 * 145.00223 * 23 22 19 25 25 C 1.37998 * 119.87179 * 179.97438 * 24 23 22 26 26 C 1.38335 * 120.12799 * 359.97438 * 25 24 23 27 27 C 1.38335 * 120.25383 * 0.02562 * 26 25 24 28 28 C 1.38002 * 120.12751 * 359.97438 * 27 26 25 29 29 N 1.31302 * 106.94591 * 0.26588 * 22 19 18 30 30 H 1.08995 * 109.47300 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47132 * 300.00371 * 1 2 3 32 32 H 1.09010 * 109.46877 * 59.99554 * 1 2 3 33 33 H 1.08996 * 109.46719 * 240.00234 * 2 1 3 34 34 H 1.08999 * 109.46584 * 120.00064 * 2 1 3 35 35 H 0.97002 * 120.00001 * 180.02562 * 8 7 5 36 36 H 0.96998 * 120.00104 * 265.00309 * 13 3 2 37 37 H 1.09000 * 109.47078 * 59.99582 * 16 14 13 38 38 H 1.08999 * 109.46962 * 300.00371 * 16 14 13 39 39 H 1.08004 * 126.08121 * 0.04732 * 18 17 16 40 40 H 1.07999 * 120.00094 * 359.97438 * 20 19 18 41 41 H 1.08000 * 120.06250 * 359.95322 * 24 23 22 42 42 H 1.08001 * 119.94033 * 180.02562 * 25 24 23 43 43 H 1.07998 * 119.87264 * 179.72362 * 26 25 24 44 44 H 1.08001 * 119.93428 * 180.02562 * 27 26 25 45 45 H 1.08001 * 120.06644 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6522 7 6 4.1433 0.8783 1.2280 8 7 5.4540 0.8795 1.3359 9 14 3.0963 0.1098 2.5707 10 1 2.8745 -1.3262 2.2644 11 1 3.7940 0.2357 3.8754 12 1 1.7880 0.8091 2.6395 13 7 1.6525 2.0976 -1.2518 14 6 0.4352 2.6645 -1.3669 15 8 -0.3392 2.6327 -0.4340 16 6 0.0363 3.3378 -2.6547 17 7 -1.3221 3.8711 -2.5266 18 6 -1.6739 5.1455 -2.7458 19 6 -3.0353 5.2539 -2.5222 20 6 -3.8522 6.4639 -2.6430 21 8 -5.0432 6.4169 -2.4163 22 6 -3.4975 3.9136 -2.1410 23 6 -4.8869 3.5225 -1.8022 24 6 -5.3646 2.2613 -2.1552 25 6 -6.6585 1.9025 -1.8367 26 6 -7.4810 2.7915 -1.1681 27 6 -7.0124 4.0443 -0.8153 28 6 -5.7202 4.4140 -1.1285 29 7 -2.4452 3.1284 -2.1523 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5140 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 5.8771 0.4809 2.1125 36 1 2.2720 2.1232 -1.9977 37 1 0.0674 2.6132 -3.4684 38 1 0.7277 4.1531 -2.8677 39 1 -1.0126 5.9456 -3.0441 40 1 -3.3943 7.3978 -2.9337 41 1 -4.7233 1.5665 -2.6771 42 1 -7.0295 0.9256 -2.1093 43 1 -8.4943 2.5080 -0.9249 44 1 -7.6588 4.7341 -0.2930 45 1 -5.3556 5.3926 -0.8530 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867419090.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:55 Heat of formation + Delta-G solvation = 20.056174 kcal Electronic energy + Delta-G solvation = -28965.566191 eV Core-core repulsion = 24949.523548 eV Total energy + Delta-G solvation = -4016.042643 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.22314 -40.73000 -39.79972 -39.25689 -37.17220 -34.74985 -34.41296 -33.34001 -32.09396 -31.82777 -31.29534 -29.70378 -28.20252 -25.06210 -24.73455 -23.86737 -23.56333 -22.48443 -21.43010 -21.32259 -20.60848 -19.22083 -18.48191 -17.85502 -17.62211 -17.31413 -16.92286 -16.57164 -16.32862 -16.08166 -15.90219 -15.56327 -15.38688 -15.11846 -14.92726 -14.78039 -14.35038 -14.30119 -14.11784 -13.93754 -13.78606 -13.69846 -13.45172 -13.17991 -12.92971 -12.82528 -12.45631 -12.27235 -12.11794 -11.91007 -11.65458 -11.45222 -11.26787 -11.13764 -10.88926 -10.63840 -10.46254 -9.80877 -9.80708 -9.73223 -9.25821 -8.40993 -6.45201 0.02222 0.41682 0.52902 1.19310 1.22827 1.31974 1.40386 1.40682 1.70102 2.22182 2.27020 2.40010 2.94292 2.95419 3.30640 3.56265 3.73589 3.86207 4.00199 4.04498 4.13060 4.17155 4.19729 4.26588 4.27421 4.35613 4.42569 4.48339 4.56533 4.75474 4.80124 4.91648 4.95292 4.99016 5.07073 5.16506 5.17648 5.27066 5.38003 5.46339 5.57489 5.59929 5.62634 5.66103 5.86730 6.07220 6.12868 6.57776 6.58422 6.80589 6.84381 7.18243 7.45033 8.73801 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015770 B = 0.002745 C = 0.002494 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.148494 B =10196.689978 C =11223.894367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.136 4.136 3 C 0.254 3.746 4 H 0.016 0.984 5 C -0.528 4.528 6 H 0.066 0.934 7 C 0.034 3.966 8 N -0.930 5.930 9 Si 0.929 3.071 10 H -0.263 1.263 11 H -0.294 1.294 12 H -0.268 1.268 13 N -0.695 5.695 14 C 0.484 3.516 15 O -0.566 6.566 16 C 0.112 3.888 17 N -0.351 5.351 18 C 0.149 3.851 19 C -0.366 4.366 20 C 0.416 3.584 21 O -0.509 6.509 22 C 0.130 3.870 23 C -0.048 4.048 24 C -0.108 4.108 25 C -0.135 4.135 26 C -0.109 4.109 27 C -0.136 4.136 28 C -0.076 4.076 29 N -0.299 5.299 30 H 0.052 0.948 31 H 0.027 0.973 32 H 0.055 0.945 33 H 0.072 0.928 34 H 0.040 0.960 35 H 0.270 0.730 36 H 0.412 0.588 37 H 0.143 0.857 38 H 0.183 0.817 39 H 0.251 0.749 40 H 0.158 0.842 41 H 0.116 0.884 42 H 0.147 0.853 43 H 0.153 0.847 44 H 0.144 0.856 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.154 9.628 -13.355 24.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.175 4.175 3 C 0.149 3.851 4 H 0.034 0.966 5 C -0.566 4.566 6 H 0.084 0.916 7 C -0.166 4.166 8 N -0.569 5.569 9 Si 0.757 3.243 10 H -0.189 1.189 11 H -0.221 1.221 12 H -0.193 1.193 13 N -0.346 5.346 14 C 0.270 3.730 15 O -0.444 6.444 16 C -0.012 4.012 17 N -0.128 5.128 18 C 0.000 4.000 19 C -0.379 4.379 20 C 0.279 3.721 21 O -0.385 6.385 22 C -0.038 4.038 23 C -0.050 4.050 24 C -0.127 4.127 25 C -0.153 4.153 26 C -0.127 4.127 27 C -0.154 4.154 28 C -0.095 4.095 29 N -0.117 5.117 30 H 0.071 0.929 31 H 0.046 0.954 32 H 0.074 0.926 33 H 0.091 0.909 34 H 0.058 0.942 35 H 0.079 0.921 36 H 0.248 0.752 37 H 0.161 0.839 38 H 0.200 0.800 39 H 0.267 0.733 40 H 0.174 0.826 41 H 0.134 0.866 42 H 0.164 0.836 43 H 0.170 0.830 44 H 0.162 0.838 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -18.516 8.269 -12.302 23.718 hybrid contribution 0.423 -0.073 0.671 0.797 sum -18.093 8.197 -11.631 23.018 Atomic orbital electron populations 1.21707 0.95612 1.00072 1.01245 1.22218 0.95247 0.98967 1.01049 1.18690 0.93218 0.89252 0.83915 0.96571 1.21274 0.90136 1.38291 1.06897 0.91611 1.25437 0.95527 0.95983 0.99643 1.69948 1.10004 1.46155 1.30831 0.86155 0.79199 0.79958 0.78943 1.18851 1.22124 1.19278 1.45858 1.15507 1.56076 1.17148 1.21158 0.81917 0.79513 0.90460 1.90785 1.51893 1.59905 1.41863 1.22027 0.78965 1.04157 0.96030 1.48009 1.07208 1.07350 1.50256 1.24065 0.95500 0.87729 0.92710 1.22788 0.95303 0.96657 1.23130 1.23616 0.87035 0.91007 0.70475 1.90506 1.19638 1.88284 1.40110 1.22393 0.92408 0.92343 0.96699 1.17987 0.89669 0.95427 1.01906 1.21322 0.96766 0.94841 0.99800 1.21340 0.93218 1.01012 0.99692 1.21609 1.00862 0.93334 0.96905 1.21388 0.95456 0.97534 1.01060 1.21549 0.94013 0.98546 0.95378 1.77454 0.92568 1.20376 1.21314 0.92900 0.95397 0.92620 0.90904 0.94186 0.92093 0.75160 0.83916 0.79981 0.73261 0.82586 0.86610 0.83573 0.82966 0.83843 0.85185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.18 8.52 71.98 0.61 -4.57 16 2 C -0.14 -5.79 5.11 30.60 0.16 -5.63 16 3 C 0.25 11.36 1.83 44.25 0.08 11.44 16 4 H 0.02 0.85 6.63 -2.39 -0.02 0.83 16 5 C -0.53 -27.19 9.31 25.60 0.24 -26.95 16 6 H 0.07 3.52 7.98 -2.91 -0.02 3.50 16 7 C 0.03 1.88 5.45 84.65 0.46 2.34 16 8 N -0.93 -54.29 13.96 21.45 0.30 -53.99 16 9 Si 0.93 44.67 24.41 68.60 1.67 46.34 16 10 H -0.26 -12.00 6.83 99.48 0.68 -11.32 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.27 -13.07 6.53 99.48 0.65 -12.42 16 13 N -0.69 -23.22 5.02 -446.09 -2.24 -25.46 16 14 C 0.48 15.16 6.42 87.66 0.56 15.73 16 15 O -0.57 -23.85 12.79 -3.03 -0.04 -23.89 16 16 C 0.11 1.96 6.93 85.63 0.59 2.56 16 17 N -0.35 -8.03 3.36 -349.93 -1.18 -9.20 16 18 C 0.15 2.30 11.39 84.40 0.96 3.26 16 19 C -0.37 -8.02 6.26 -18.85 -0.12 -8.13 16 20 C 0.42 7.28 11.56 69.97 0.81 8.09 16 21 O -0.51 -12.97 13.27 -3.20 -0.04 -13.01 16 22 C 0.13 3.99 6.94 44.14 0.31 4.29 16 23 C -0.05 -1.47 5.73 -20.05 -0.11 -1.58 16 24 C -0.11 -3.03 9.76 22.49 0.22 -2.81 16 25 C -0.13 -3.03 10.03 22.24 0.22 -2.80 16 26 C -0.11 -2.21 10.04 22.32 0.22 -1.99 16 27 C -0.14 -3.15 10.03 22.24 0.22 -2.93 16 28 C -0.08 -2.14 7.79 22.49 0.18 -1.96 16 29 N -0.30 -9.67 11.46 -44.43 -0.51 -10.18 16 30 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 31 H 0.03 1.22 7.85 -2.39 -0.02 1.20 16 32 H 0.05 2.20 5.65 -2.38 -0.01 2.19 16 33 H 0.07 2.86 8.14 -2.39 -0.02 2.84 16 34 H 0.04 1.81 3.22 -2.39 -0.01 1.81 16 35 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 36 H 0.41 10.96 8.54 -92.71 -0.79 10.16 16 37 H 0.14 1.81 8.14 -2.39 -0.02 1.79 16 38 H 0.18 1.19 8.04 -2.39 -0.02 1.17 16 39 H 0.25 0.38 8.06 -2.91 -0.02 0.36 16 40 H 0.16 0.91 8.06 -2.91 -0.02 0.89 16 41 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 42 H 0.15 2.44 8.06 -2.91 -0.02 2.42 16 43 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 44 H 0.14 2.56 8.06 -2.91 -0.02 2.53 16 45 H 0.13 3.77 5.65 -2.91 -0.02 3.75 16 Total: -1.00 -85.18 372.48 3.74 -81.44 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: 0.16 Total: 19.61 kcal Atomic # 6 Polarization: -17.28 SS G_CDS: 5.62 Total: -11.67 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -3.62 Total: -98.83 kcal Atomic # 8 Polarization: -36.82 SS G_CDS: -0.08 Total: -36.90 kcal Atomic # 14 Polarization: 44.67 SS G_CDS: 1.67 Total: 46.34 kcal Total: -85.18 3.74 -81.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867419090.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.493 kcal (2) G-P(sol) polarization free energy of solvation -85.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.744 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.437 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds