Wall clock time and date at job start Sat Apr 11 2020 06:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47189 * 2 1 4 4 H 1.08997 * 109.47074 * 304.60614 * 3 2 1 5 5 C 1.53001 * 109.47378 * 64.61072 * 3 2 1 6 6 C 1.52997 * 109.47147 * 185.00366 * 5 3 2 7 7 H 1.09001 * 109.47614 * 54.99501 * 6 5 3 8 8 C 1.52998 * 109.46871 * 174.99910 * 6 5 3 9 9 O 1.42902 * 109.46954 * 294.99637 * 6 5 3 10 10 N 1.46504 * 109.47002 * 184.61089 * 3 2 1 11 11 S 1.65603 * 120.00052 * 95.80407 * 10 3 2 12 12 O 1.42101 * 104.27648 * 181.83591 * 11 10 3 13 13 O 1.42104 * 104.27492 * 309.68963 * 11 10 3 14 14 C 1.81396 * 104.45157 * 65.76018 * 11 10 3 15 15 C 1.50694 * 109.47319 * 180.02562 * 14 11 10 16 16 C 1.38631 * 119.74988 * 269.73025 * 15 14 11 17 17 C 1.37624 * 120.25060 * 179.72331 * 16 15 14 18 18 C 1.40717 * 119.74079 * 0.56481 * 17 16 15 19 19 C 1.41396 * 120.23841 * 179.68712 * 18 17 16 20 20 H 1.08007 * 119.99156 * 207.96148 * 19 18 17 21 21 C 1.39940 * 120.00585 * 27.96545 * 19 18 17 22 22 N 1.30828 * 120.00008 * 11.36330 * 21 19 18 23 23 Si 1.86803 * 119.99890 * 191.37216 * 21 19 18 24 24 H 1.48499 * 109.47521 * 59.99466 * 23 21 19 25 25 H 1.48507 * 109.46753 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46917 * 299.99280 * 23 21 19 27 27 C 1.40711 * 119.51129 * 359.70777 * 18 17 16 28 28 C 1.37614 * 119.74758 * 0.02562 * 27 18 17 29 29 H 1.08996 * 109.47253 * 173.72041 * 1 2 3 30 30 H 1.09004 * 109.47043 * 53.72373 * 1 2 3 31 31 H 1.08998 * 109.46787 * 293.72323 * 1 2 3 32 32 H 1.08995 * 109.47386 * 119.99972 * 2 1 3 33 33 H 1.08998 * 109.47318 * 240.00114 * 2 1 3 34 34 H 1.08998 * 109.46546 * 305.00167 * 5 3 2 35 35 H 1.08999 * 109.46652 * 64.99966 * 5 3 2 36 36 H 1.09003 * 109.47018 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47135 * 299.99395 * 8 6 5 38 38 H 1.09003 * 109.47216 * 60.00187 * 8 6 5 39 39 H 0.96698 * 114.00367 * 180.02562 * 9 6 5 40 40 H 0.96995 * 120.00210 * 275.80060 * 10 3 2 41 41 H 1.09005 * 109.47479 * 300.00080 * 14 11 10 42 42 H 1.08999 * 109.47124 * 59.99783 * 14 11 10 43 43 H 1.08004 * 119.87835 * 359.97438 * 16 15 14 44 44 H 1.07997 * 120.13094 * 180.28026 * 17 16 15 45 45 H 0.97000 * 119.99954 * 180.02562 * 22 21 19 46 46 H 1.08006 * 120.12396 * 179.97438 * 27 18 17 47 47 H 1.07999 * 119.87505 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6109 1.9796 -0.8458 5 6 1.6269 2.1296 1.3032 6 6 2.0273 3.6053 1.2508 7 1 1.5986 4.0669 0.3613 8 6 1.5047 4.3200 2.4985 9 8 3.4516 3.7110 1.2028 10 7 3.5008 1.4440 -0.1110 11 16 4.2185 1.6280 -1.5921 12 8 5.6104 1.5364 -1.3209 13 8 3.5685 0.6713 -2.4177 14 6 3.7787 3.3123 -2.1021 15 6 4.3810 3.6016 -3.4528 16 6 5.6473 4.1597 -3.5361 17 6 6.2095 4.4229 -4.7644 18 6 5.4890 4.1343 -5.9382 19 6 6.0539 4.4066 -7.2055 20 1 5.4126 4.6238 -8.0470 21 6 7.4436 4.3946 -7.3695 22 7 8.2100 3.9190 -6.4218 23 14 8.2043 5.0577 -8.9414 24 1 7.8361 6.4870 -9.1050 25 1 9.6823 4.9331 -8.8669 26 1 7.6995 4.2806 -10.1018 27 6 4.2023 3.5732 -5.8414 28 6 3.6621 3.3133 -4.6026 29 1 -0.3633 -1.0215 -0.1124 30 1 -0.3633 0.6081 -0.8285 31 1 -0.3633 0.4134 0.9408 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 0.5472 2.0503 1.4291 35 1 2.1271 1.6469 2.1427 36 1 1.7903 5.3713 2.4615 37 1 0.4183 4.2395 2.5351 38 1 1.9335 3.8586 3.3881 39 1 3.7777 4.6207 1.1684 40 1 4.0477 1.3372 0.6829 41 1 2.6940 3.4025 -2.1615 42 1 4.1631 4.0249 -1.3723 43 1 6.1963 4.3851 -2.6338 44 1 7.1979 4.8536 -4.8271 45 1 9.1733 3.9110 -6.5353 46 1 3.6403 3.3481 -6.7359 47 1 2.6748 2.8823 -4.5259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867903503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:01 Heat of formation + Delta-G solvation = -129.532011 kcal Electronic energy + Delta-G solvation = -28413.111186 eV Core-core repulsion = 24493.733113 eV Total energy + Delta-G solvation = -3919.378074 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -38.66534 -37.74058 -36.59307 -36.09897 -35.27030 -34.08595 -32.13789 -31.79355 -31.42357 -29.40218 -28.01216 -27.75810 -24.57518 -24.16899 -21.64548 -21.14260 -20.81678 -20.30782 -18.94901 -17.66983 -17.38209 -17.07229 -16.21215 -15.76180 -15.40596 -15.17306 -14.86505 -14.70757 -14.31181 -13.99448 -13.84729 -13.76790 -13.53452 -12.87806 -12.77507 -12.61620 -12.37325 -12.24512 -12.09200 -12.02047 -11.82908 -11.66848 -11.55113 -11.45591 -11.35639 -11.28124 -11.23692 -11.11965 -11.03098 -10.97210 -10.59873 -10.53315 -10.25018 -10.12460 -9.75887 -9.46593 -9.29510 -9.08599 -7.57131 -7.35225 -6.80230 -4.46190 0.82008 2.69056 2.98774 3.03929 3.06223 3.14081 3.26290 3.87766 4.04217 4.31970 4.37314 4.57607 4.65543 4.70103 4.84747 4.93065 5.00613 5.11352 5.19482 5.23667 5.35042 5.39436 5.45180 5.51330 5.57839 5.61894 5.70296 5.74469 5.85846 5.95364 5.95941 6.11833 6.23153 6.24888 6.30739 6.34531 6.87240 6.98570 7.14152 7.24450 7.33524 7.51111 7.51289 7.70344 7.94142 7.95955 8.18681 8.53785 8.78683 8.85296 10.12659 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.002795 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.265156 B =10014.933283 C =10408.521996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.146 4.146 3 C 0.161 3.839 4 H 0.077 0.923 5 C -0.122 4.122 6 C 0.098 3.902 7 H 0.056 0.944 8 C -0.186 4.186 9 O -0.558 6.558 10 N -1.108 6.108 11 S 2.586 3.414 12 O -0.965 6.965 13 O -0.968 6.968 14 C -0.521 4.521 15 C -0.231 4.231 16 C -0.084 4.084 17 C -0.161 4.161 18 C 0.116 3.884 19 C -0.453 4.453 20 H 0.080 0.920 21 C 0.071 3.929 22 N -0.789 5.789 23 Si 0.915 3.085 24 H -0.263 1.263 25 H -0.277 1.277 26 H -0.264 1.264 27 C -0.222 4.222 28 C -0.073 4.073 29 H 0.056 0.944 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.077 0.923 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.062 0.938 39 H 0.375 0.625 40 H 0.414 0.586 41 H 0.112 0.888 42 H 0.123 0.877 43 H 0.095 0.905 44 H 0.125 0.875 45 H 0.284 0.716 46 H 0.098 0.902 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.621 0.184 15.781 20.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.185 4.185 3 C 0.053 3.947 4 H 0.096 0.904 5 C -0.161 4.161 6 C 0.039 3.961 7 H 0.074 0.926 8 C -0.243 4.243 9 O -0.364 6.364 10 N -0.863 5.863 11 S 2.684 3.316 12 O -0.956 6.956 13 O -0.958 6.958 14 C -0.651 4.651 15 C -0.235 4.235 16 C -0.104 4.104 17 C -0.180 4.180 18 C 0.113 3.887 19 C -0.483 4.483 20 H 0.099 0.901 21 C -0.147 4.147 22 N -0.414 5.414 23 Si 0.739 3.261 24 H -0.188 1.188 25 H -0.202 1.202 26 H -0.189 1.189 27 C -0.242 4.242 28 C -0.093 4.093 29 H 0.075 0.925 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.096 0.904 36 H 0.076 0.924 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.223 0.777 40 H 0.248 0.752 41 H 0.131 0.869 42 H 0.142 0.858 43 H 0.113 0.887 44 H 0.143 0.857 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -12.021 -1.220 15.334 19.522 hybrid contribution 0.272 1.431 -0.096 1.459 sum -11.749 0.211 15.237 19.242 Atomic orbital electron populations 1.21803 0.95540 1.02032 1.01605 1.22103 0.95849 0.96901 1.03675 1.20656 0.80365 0.95807 0.97890 0.90447 1.22063 1.01601 0.93899 0.98498 1.21804 0.81859 0.95895 0.96503 0.92641 1.22520 1.01767 1.00775 0.99280 1.86593 1.20388 1.32257 1.97168 1.55735 1.13276 1.90262 1.27075 1.06174 0.74058 0.78479 0.72873 1.93538 1.31385 1.87204 1.83430 1.93520 1.76644 1.57938 1.67698 1.28953 1.08718 1.22092 1.05375 1.18178 0.97842 1.17717 0.89811 1.20637 0.93726 0.98629 0.97390 1.21395 1.01202 1.04583 0.90859 1.17738 0.90610 0.86882 0.93456 1.19663 0.91532 1.41188 0.95878 0.90149 1.25988 0.97515 0.92801 0.98441 1.69789 1.06539 1.32016 1.33073 0.86253 0.77998 0.80344 0.81471 1.18793 1.20202 1.18893 1.21017 0.98940 1.08837 0.95404 1.20460 0.97481 0.98679 0.92639 0.92516 0.92425 0.92745 0.91637 0.89975 0.89309 0.90393 0.92364 0.91776 0.91864 0.77740 0.75212 0.86912 0.85843 0.88698 0.85717 0.90477 0.88372 0.88777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.50 37.16 0.35 -0.88 16 2 C -0.15 -1.52 5.73 -26.73 -0.15 -1.68 16 3 C 0.16 1.68 2.15 -67.93 -0.15 1.54 16 4 H 0.08 0.79 7.22 -51.93 -0.37 0.42 16 5 C -0.12 -0.94 4.48 -26.73 -0.12 -1.06 16 6 C 0.10 0.75 3.58 -26.73 -0.10 0.65 16 7 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 8 C -0.19 -1.13 9.53 37.16 0.35 -0.77 16 9 O -0.56 -4.94 11.29 -35.23 -0.40 -5.34 16 10 N -1.11 -14.31 3.86 -4.89 -0.02 -14.33 16 11 S 2.59 46.55 5.36 -107.50 -0.58 45.97 16 12 O -0.97 -21.11 18.08 -57.54 -1.04 -22.15 16 13 O -0.97 -20.20 17.12 -57.54 -0.99 -21.18 16 14 C -0.52 -8.67 6.10 36.00 0.22 -8.45 16 15 C -0.23 -5.06 5.16 -104.33 -0.54 -5.60 16 16 C -0.08 -2.00 9.67 -39.66 -0.38 -2.38 16 17 C -0.16 -4.20 8.67 -38.87 -0.34 -4.54 16 18 C 0.12 3.10 5.56 -106.83 -0.59 2.51 16 19 C -0.45 -11.86 9.07 -37.74 -0.34 -12.20 16 20 H 0.08 1.99 7.87 -52.48 -0.41 1.58 16 21 C 0.07 1.77 5.25 -17.34 -0.09 1.68 16 22 N -0.79 -20.47 10.82 55.55 0.60 -19.87 16 23 Si 0.92 18.44 29.57 -169.99 -5.03 13.41 16 24 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 25 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 26 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 27 C -0.22 -5.48 9.80 -38.88 -0.38 -5.86 16 28 C -0.07 -1.66 9.67 -39.66 -0.38 -2.04 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 0.34 6.76 -51.93 -0.35 -0.01 16 32 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.08 1.08 7.46 -51.93 -0.39 0.69 16 34 H 0.09 0.52 6.47 -51.93 -0.34 0.18 16 35 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.38 2.28 9.08 45.56 0.41 2.70 16 40 H 0.41 4.98 8.44 -34.47 -0.29 4.69 16 41 H 0.11 1.56 7.44 -51.92 -0.39 1.17 16 42 H 0.12 1.75 7.95 -51.92 -0.41 1.34 16 43 H 0.09 2.04 8.06 -52.48 -0.42 1.61 16 44 H 0.13 3.33 6.18 -52.49 -0.32 3.00 16 45 H 0.28 6.70 8.30 -40.82 -0.34 6.37 16 46 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 47 H 0.09 1.88 8.06 -52.49 -0.42 1.45 16 LS Contribution 393.80 15.07 5.93 5.93 Total: -1.00 -33.32 393.80 -10.79 -44.12 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -6.65 Total: 12.51 kcal Atomic # 6 Polarization: -36.44 SS G_CDS: -2.64 Total: -39.08 kcal Atomic # 7 Polarization: -34.78 SS G_CDS: 0.58 Total: -34.20 kcal Atomic # 8 Polarization: -46.25 SS G_CDS: -2.42 Total: -48.67 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.03 Total: 13.41 kcal Atomic # 16 Polarization: 46.55 SS G_CDS: -0.58 Total: 45.97 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.32 -10.79 -44.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867903503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.413 kcal (2) G-P(sol) polarization free energy of solvation -33.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.738 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.532 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds