Wall clock time and date at job start Sat Apr 11 2020 06:19:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47189 * 2 1 4 4 H 1.08997 * 109.47074 * 304.60614 * 3 2 1 5 5 C 1.53001 * 109.47378 * 64.61072 * 3 2 1 6 6 C 1.52997 * 109.47147 * 185.00366 * 5 3 2 7 7 H 1.09001 * 109.47614 * 54.99501 * 6 5 3 8 8 C 1.52998 * 109.46871 * 174.99910 * 6 5 3 9 9 O 1.42902 * 109.46954 * 294.99637 * 6 5 3 10 10 N 1.46504 * 109.47002 * 184.61089 * 3 2 1 11 11 S 1.65603 * 120.00052 * 95.80407 * 10 3 2 12 12 O 1.42101 * 104.27648 * 181.83591 * 11 10 3 13 13 O 1.42104 * 104.27492 * 309.68963 * 11 10 3 14 14 C 1.81396 * 104.45157 * 65.76018 * 11 10 3 15 15 C 1.50694 * 109.47319 * 180.02562 * 14 11 10 16 16 C 1.38631 * 119.74988 * 269.73025 * 15 14 11 17 17 C 1.37624 * 120.25060 * 179.72331 * 16 15 14 18 18 C 1.40717 * 119.74079 * 0.56481 * 17 16 15 19 19 C 1.41396 * 120.23841 * 179.68712 * 18 17 16 20 20 H 1.08007 * 119.99156 * 207.96148 * 19 18 17 21 21 C 1.39940 * 120.00585 * 27.96545 * 19 18 17 22 22 N 1.30828 * 120.00008 * 11.36330 * 21 19 18 23 23 Si 1.86803 * 119.99890 * 191.37216 * 21 19 18 24 24 H 1.48499 * 109.47521 * 59.99466 * 23 21 19 25 25 H 1.48507 * 109.46753 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46917 * 299.99280 * 23 21 19 27 27 C 1.40711 * 119.51129 * 359.70777 * 18 17 16 28 28 C 1.37614 * 119.74758 * 0.02562 * 27 18 17 29 29 H 1.08996 * 109.47253 * 173.72041 * 1 2 3 30 30 H 1.09004 * 109.47043 * 53.72373 * 1 2 3 31 31 H 1.08998 * 109.46787 * 293.72323 * 1 2 3 32 32 H 1.08995 * 109.47386 * 119.99972 * 2 1 3 33 33 H 1.08998 * 109.47318 * 240.00114 * 2 1 3 34 34 H 1.08998 * 109.46546 * 305.00167 * 5 3 2 35 35 H 1.08999 * 109.46652 * 64.99966 * 5 3 2 36 36 H 1.09003 * 109.47018 * 179.97438 * 8 6 5 37 37 H 1.08998 * 109.47135 * 299.99395 * 8 6 5 38 38 H 1.09003 * 109.47216 * 60.00187 * 8 6 5 39 39 H 0.96698 * 114.00367 * 180.02562 * 9 6 5 40 40 H 0.96995 * 120.00210 * 275.80060 * 10 3 2 41 41 H 1.09005 * 109.47479 * 300.00080 * 14 11 10 42 42 H 1.08999 * 109.47124 * 59.99783 * 14 11 10 43 43 H 1.08004 * 119.87835 * 359.97438 * 16 15 14 44 44 H 1.07997 * 120.13094 * 180.28026 * 17 16 15 45 45 H 0.97000 * 119.99954 * 180.02562 * 22 21 19 46 46 H 1.08006 * 120.12396 * 179.97438 * 27 18 17 47 47 H 1.07999 * 119.87505 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6109 1.9796 -0.8458 5 6 1.6269 2.1296 1.3032 6 6 2.0273 3.6053 1.2508 7 1 1.5986 4.0669 0.3613 8 6 1.5047 4.3200 2.4985 9 8 3.4516 3.7110 1.2028 10 7 3.5008 1.4440 -0.1110 11 16 4.2185 1.6280 -1.5921 12 8 5.6104 1.5364 -1.3209 13 8 3.5685 0.6713 -2.4177 14 6 3.7787 3.3123 -2.1021 15 6 4.3810 3.6016 -3.4528 16 6 5.6473 4.1597 -3.5361 17 6 6.2095 4.4229 -4.7644 18 6 5.4890 4.1343 -5.9382 19 6 6.0539 4.4066 -7.2055 20 1 5.4126 4.6238 -8.0470 21 6 7.4436 4.3946 -7.3695 22 7 8.2100 3.9190 -6.4218 23 14 8.2043 5.0577 -8.9414 24 1 7.8361 6.4870 -9.1050 25 1 9.6823 4.9331 -8.8669 26 1 7.6995 4.2806 -10.1018 27 6 4.2023 3.5732 -5.8414 28 6 3.6621 3.3133 -4.6026 29 1 -0.3633 -1.0215 -0.1124 30 1 -0.3633 0.6081 -0.8285 31 1 -0.3633 0.4134 0.9408 32 1 1.8933 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 0.5472 2.0503 1.4291 35 1 2.1271 1.6469 2.1427 36 1 1.7903 5.3713 2.4615 37 1 0.4183 4.2395 2.5351 38 1 1.9335 3.8586 3.3881 39 1 3.7777 4.6207 1.1684 40 1 4.0477 1.3372 0.6829 41 1 2.6940 3.4025 -2.1615 42 1 4.1631 4.0249 -1.3723 43 1 6.1963 4.3851 -2.6338 44 1 7.1979 4.8536 -4.8271 45 1 9.1733 3.9110 -6.5353 46 1 3.6403 3.3481 -6.7359 47 1 2.6748 2.8823 -4.5259 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867903503.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:00 Heat of formation + Delta-G solvation = -153.625066 kcal Electronic energy + Delta-G solvation = -28414.155940 eV Core-core repulsion = 24493.733113 eV Total energy + Delta-G solvation = -3920.422827 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.58914 -39.36687 -38.03243 -37.01263 -36.78652 -35.91737 -33.19495 -33.04546 -32.37223 -31.28480 -29.50581 -28.64066 -25.98000 -25.26180 -23.01369 -22.23685 -22.16478 -21.56203 -20.29658 -19.28311 -18.70175 -18.01747 -17.42217 -17.20554 -17.13565 -16.07789 -16.03065 -15.83285 -15.68362 -15.46371 -15.42642 -14.60934 -14.35562 -14.26101 -13.90691 -13.83702 -13.71995 -13.51048 -13.26935 -13.13119 -13.05471 -12.98144 -12.96289 -12.77170 -12.74823 -12.73081 -12.35404 -12.30456 -12.24737 -12.11823 -11.91639 -11.68044 -11.54592 -11.34318 -11.28995 -11.04374 -10.75024 -10.15190 -9.47006 -9.21880 -8.65087 -6.42331 -0.62515 0.89255 1.06161 1.37787 1.50222 1.51880 2.00210 2.19162 2.67107 2.97238 3.33702 3.52485 3.65056 3.66085 3.84865 4.02757 4.06673 4.18453 4.31947 4.36930 4.43829 4.48880 4.51651 4.53214 4.67341 4.72559 4.74740 4.92104 4.99390 5.06511 5.09731 5.10193 5.16174 5.25010 5.25930 5.29906 5.35452 5.41592 5.44822 5.57529 5.62171 5.83109 6.02661 6.05141 6.29108 6.32988 6.61761 6.86506 6.93516 7.04487 8.30633 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019878 B = 0.002795 C = 0.002689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1408.265156 B =10014.933283 C =10408.521996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.148 4.148 3 C 0.151 3.849 4 H 0.084 0.916 5 C -0.116 4.116 6 C 0.093 3.907 7 H 0.062 0.938 8 C -0.181 4.181 9 O -0.579 6.579 10 N -1.090 6.090 11 S 2.598 3.402 12 O -1.010 7.010 13 O -1.001 7.001 14 C -0.517 4.517 15 C -0.225 4.225 16 C -0.095 4.095 17 C -0.187 4.187 18 C 0.083 3.917 19 C -0.492 4.492 20 H 0.083 0.917 21 C 0.028 3.972 22 N -0.829 5.829 23 Si 0.990 3.010 24 H -0.256 1.256 25 H -0.269 1.269 26 H -0.259 1.259 27 C -0.240 4.240 28 C -0.081 4.081 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.048 0.952 34 H 0.114 0.886 35 H 0.078 0.922 36 H 0.061 0.939 37 H 0.075 0.925 38 H 0.057 0.943 39 H 0.386 0.614 40 H 0.421 0.579 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.113 0.887 44 H 0.108 0.892 45 H 0.290 0.710 46 H 0.106 0.894 47 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.773 0.801 17.429 22.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.188 4.188 3 C 0.044 3.956 4 H 0.102 0.898 5 C -0.154 4.154 6 C 0.034 3.966 7 H 0.080 0.920 8 C -0.238 4.238 9 O -0.386 6.386 10 N -0.849 5.849 11 S 2.697 3.303 12 O -1.000 7.000 13 O -0.991 6.991 14 C -0.648 4.648 15 C -0.229 4.229 16 C -0.114 4.114 17 C -0.207 4.207 18 C 0.080 3.920 19 C -0.521 4.521 20 H 0.101 0.899 21 C -0.186 4.186 22 N -0.455 5.455 23 Si 0.810 3.190 24 H -0.180 1.180 25 H -0.193 1.193 26 H -0.183 1.183 27 C -0.260 4.260 28 C -0.100 4.100 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.097 0.903 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.132 0.868 35 H 0.096 0.904 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.076 0.924 39 H 0.235 0.765 40 H 0.257 0.743 41 H 0.169 0.831 42 H 0.172 0.828 43 H 0.131 0.869 44 H 0.126 0.874 45 H 0.100 0.900 46 H 0.125 0.875 47 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -14.177 -0.599 16.979 22.127 hybrid contribution 0.778 1.167 -0.380 1.453 sum -13.399 0.568 16.599 21.340 Atomic orbital electron populations 1.21803 0.93505 1.02448 1.02978 1.22102 0.97673 0.96613 1.02402 1.21007 0.78312 0.96364 0.99960 0.89804 1.22073 1.03125 0.93740 0.96507 1.21925 0.81363 0.95826 0.97481 0.92041 1.22457 1.02404 1.00715 0.98243 1.86556 1.21304 1.33519 1.97265 1.55255 1.14661 1.89792 1.25214 1.05307 0.72964 0.78473 0.73575 1.93483 1.34339 1.87872 1.84342 1.93489 1.76893 1.59331 1.69363 1.28953 1.11074 1.21747 1.03021 1.18599 0.96909 1.15142 0.92216 1.20946 0.94776 0.98532 0.97190 1.21401 1.01061 1.06191 0.92064 1.18099 0.91812 0.88002 0.94039 1.19937 0.92737 1.43345 0.96083 0.89927 1.26897 0.97447 0.92317 1.01954 1.69866 1.07027 1.33277 1.35296 0.85130 0.77223 0.79728 0.76878 1.18038 1.19298 1.18314 1.21272 0.98676 1.09111 0.96899 1.20870 0.98891 0.98102 0.92155 0.92446 0.92330 0.90316 0.90945 0.93315 0.86751 0.90355 0.92020 0.90618 0.92383 0.76489 0.74346 0.83101 0.82786 0.86920 0.87383 0.89955 0.87541 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.50 71.98 0.68 -1.31 16 2 C -0.15 -2.80 5.73 30.59 0.18 -2.63 16 3 C 0.15 2.72 2.15 44.99 0.10 2.81 16 4 H 0.08 1.42 7.22 -2.39 -0.02 1.40 16 5 C -0.12 -1.35 4.48 30.59 0.14 -1.21 16 6 C 0.09 1.06 3.58 30.59 0.11 1.17 16 7 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 8 C -0.18 -1.57 9.53 71.98 0.69 -0.89 16 9 O -0.58 -8.50 11.29 -148.98 -1.68 -10.18 16 10 N -1.09 -25.96 3.86 -169.38 -0.65 -26.62 16 11 S 2.60 90.28 5.36 -56.49 -0.30 89.98 16 12 O -1.01 -44.03 18.08 -127.65 -2.31 -46.34 16 13 O -1.00 -41.17 17.12 -127.65 -2.19 -43.36 16 14 C -0.52 -15.73 6.10 71.23 0.43 -15.29 16 15 C -0.22 -9.58 5.16 -19.68 -0.10 -9.68 16 16 C -0.10 -4.54 9.67 22.22 0.21 -4.32 16 17 C -0.19 -10.19 8.67 22.73 0.20 -9.99 16 18 C 0.08 4.61 5.56 -21.29 -0.12 4.50 16 19 C -0.49 -26.78 9.07 23.46 0.21 -26.57 16 20 H 0.08 4.25 7.87 -2.91 -0.02 4.23 16 21 C 0.03 1.45 5.25 85.25 0.45 1.90 16 22 N -0.83 -44.77 10.82 21.83 0.24 -44.53 16 23 Si 0.99 38.53 29.57 68.60 2.03 40.56 16 24 H -0.26 -9.58 7.11 99.48 0.71 -8.87 16 25 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 C -0.24 -12.04 9.80 22.73 0.22 -11.81 16 28 C -0.08 -3.60 9.67 22.22 0.21 -3.39 16 29 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.08 0.67 6.76 -2.39 -0.02 0.65 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.05 1.25 7.46 -2.39 -0.02 1.23 16 34 H 0.11 0.78 6.47 -2.39 -0.02 0.77 16 35 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 37 H 0.07 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 39 H 0.39 3.60 9.08 -74.06 -0.67 2.92 16 40 H 0.42 9.34 8.44 -96.75 -0.82 8.52 16 41 H 0.15 3.49 7.44 -2.39 -0.02 3.47 16 42 H 0.15 3.81 7.95 -2.39 -0.02 3.79 16 43 H 0.11 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.11 6.11 6.18 -2.91 -0.02 6.09 16 45 H 0.29 14.18 8.30 -92.71 -0.77 13.41 16 46 H 0.11 4.97 8.06 -2.91 -0.02 4.95 16 47 H 0.13 4.69 8.06 -2.91 -0.02 4.67 16 Total: -1.00 -75.90 393.80 -1.76 -77.66 By element: Atomic # 1 Polarization: 40.04 SS G_CDS: -0.51 Total: 39.53 kcal Atomic # 6 Polarization: -80.32 SS G_CDS: 3.61 Total: -76.70 kcal Atomic # 7 Polarization: -70.73 SS G_CDS: -0.42 Total: -71.15 kcal Atomic # 8 Polarization: -93.70 SS G_CDS: -6.17 Total: -99.88 kcal Atomic # 14 Polarization: 38.53 SS G_CDS: 2.03 Total: 40.56 kcal Atomic # 16 Polarization: 90.28 SS G_CDS: -0.30 Total: 89.98 kcal Total: -75.90 -1.76 -77.66 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867903503.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.965 kcal (2) G-P(sol) polarization free energy of solvation -75.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds