Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47273 * 2 1 4 4 H 1.09000 * 109.46981 * 302.63325 * 3 2 1 5 5 C 1.52996 * 109.47152 * 182.63609 * 3 2 1 6 6 C 1.53004 * 109.47127 * 174.99944 * 5 3 2 7 7 H 1.08996 * 109.47102 * 304.99849 * 6 5 3 8 8 C 1.52998 * 109.47210 * 184.99764 * 6 5 3 9 9 O 1.42896 * 109.47122 * 64.99786 * 6 5 3 10 10 N 1.46497 * 109.47068 * 62.63105 * 3 2 1 11 11 S 1.65603 * 120.00036 * 238.76921 * 10 3 2 12 12 O 1.42101 * 104.27495 * 182.28267 * 11 10 3 13 13 O 1.42096 * 104.27880 * 310.14008 * 11 10 3 14 14 C 1.81404 * 104.44638 * 66.21137 * 11 10 3 15 15 C 1.50697 * 109.47054 * 180.14957 * 14 11 10 16 16 C 1.38638 * 119.75284 * 269.73237 * 15 14 11 17 17 C 1.37611 * 120.25296 * 179.72289 * 16 15 14 18 18 C 1.40724 * 119.74190 * 0.56459 * 17 16 15 19 19 C 1.41395 * 120.24288 * 179.68714 * 18 17 16 20 20 H 1.07999 * 119.99436 * 205.02124 * 19 18 17 21 21 C 1.39939 * 120.00296 * 25.01791 * 19 18 17 22 22 N 1.30828 * 120.00056 * 16.75383 * 21 19 18 23 23 Si 1.86806 * 120.00094 * 196.76054 * 21 19 18 24 24 H 1.48499 * 109.47236 * 89.99371 * 23 21 19 25 25 H 1.48495 * 109.46972 * 209.99865 * 23 21 19 26 26 H 1.48504 * 109.46782 * 329.99873 * 23 21 19 27 27 C 1.40713 * 119.50974 * 359.70693 * 18 17 16 28 28 C 1.37622 * 119.74761 * 359.97438 * 27 18 17 29 29 H 1.08999 * 109.46716 * 297.07339 * 1 2 3 30 30 H 1.08998 * 109.47229 * 57.06813 * 1 2 3 31 31 H 1.08997 * 109.47061 * 177.07465 * 1 2 3 32 32 H 1.09005 * 109.46896 * 239.99922 * 2 1 3 33 33 H 1.08999 * 109.47643 * 119.99955 * 2 1 3 34 34 H 1.09004 * 109.47513 * 54.99759 * 5 3 2 35 35 H 1.09004 * 109.47193 * 295.00101 * 5 3 2 36 36 H 1.09005 * 109.47336 * 300.00153 * 8 6 5 37 37 H 1.09004 * 109.47242 * 59.99563 * 8 6 5 38 38 H 1.08996 * 109.47481 * 179.97438 * 8 6 5 39 39 H 0.96699 * 114.00183 * 59.99919 * 9 6 5 40 40 H 0.97004 * 119.99971 * 58.77461 * 10 3 2 41 41 H 1.08993 * 109.47153 * 300.15063 * 14 11 10 42 42 H 1.09003 * 109.47104 * 60.15192 * 14 11 10 43 43 H 1.08010 * 119.87089 * 359.97214 * 16 15 14 44 44 H 1.07999 * 120.13538 * 180.27596 * 17 16 15 45 45 H 0.97002 * 119.99849 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.12526 * 179.97438 * 27 18 17 47 47 H 1.07997 * 119.87452 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6387 1.9698 -0.8654 5 6 3.5686 1.4430 -0.0663 6 6 4.0732 2.8820 -0.1920 7 1 3.6007 3.3589 -1.0507 8 6 5.5911 2.8753 -0.3835 9 8 3.7460 3.6068 0.9952 10 7 1.6042 2.1146 1.2266 11 16 0.6722 3.4805 1.1360 12 8 0.4947 3.8740 2.4898 13 8 1.3615 4.3146 0.2150 14 6 -0.8977 2.9110 0.4275 15 6 -1.8400 4.0790 0.2906 16 6 -2.6970 4.3974 1.3328 17 6 -3.5577 5.4652 1.2211 18 6 -3.5742 6.2279 0.0385 19 6 -4.4590 7.3232 -0.0902 20 1 -4.7746 7.6500 -1.0700 21 6 -4.9257 7.9838 1.0518 22 7 -4.3142 7.8218 2.1970 23 14 -6.4219 9.0967 0.9411 24 1 -7.6496 8.3030 1.2017 25 1 -6.3090 10.1797 1.9509 26 1 -6.4965 9.6922 -0.4172 27 6 -2.7039 5.8920 -1.0150 28 6 -1.8469 4.8239 -0.8786 29 1 -0.3633 0.4677 0.9151 30 1 -0.3633 0.5587 -0.8625 31 1 -0.3633 -1.0263 -0.0524 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8949 0.8666 -0.9320 35 1 3.9718 0.9945 0.8417 36 1 6.0636 2.3982 0.4752 37 1 5.8407 2.3222 -1.2891 38 1 5.9505 3.9003 -0.4735 39 1 4.1336 3.2379 1.8006 40 1 1.8616 1.7595 2.0918 41 1 -0.7159 2.4738 -0.5542 42 1 -1.3412 2.1612 1.0827 43 1 -2.6862 3.8075 2.2376 44 1 -4.2214 5.7143 2.0359 45 1 -4.6380 8.2793 2.9886 46 1 -2.7086 6.4702 -1.9271 47 1 -1.1779 4.5645 -1.6857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867903505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = -125.987671 kcal Electronic energy + Delta-G solvation = -28676.725874 eV Core-core repulsion = 24757.501494 eV Total energy + Delta-G solvation = -3919.224380 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -38.66374 -37.72344 -36.34709 -36.14406 -35.13114 -34.10370 -31.84158 -31.68933 -31.27053 -29.38193 -28.55768 -27.69040 -24.44213 -24.00633 -21.48133 -21.26435 -21.06142 -20.30293 -18.98734 -17.38441 -17.20936 -16.53904 -16.15852 -15.71640 -15.39085 -15.28848 -14.90840 -14.63737 -14.33111 -14.00326 -13.89211 -13.74130 -13.61044 -13.02640 -12.63846 -12.56861 -12.14432 -12.12789 -12.03973 -11.96805 -11.79937 -11.55758 -11.49138 -11.33328 -11.26026 -11.22979 -11.12978 -11.01846 -10.98988 -10.84983 -10.67800 -10.54834 -10.22607 -10.04727 -9.72429 -9.46651 -9.24307 -9.06902 -7.55309 -7.37044 -6.84048 -4.43746 0.84679 2.69302 3.00834 3.04419 3.07879 3.14745 3.31035 3.87363 4.24762 4.40069 4.53873 4.60301 4.69502 4.78519 4.90761 4.96486 5.08172 5.14016 5.21095 5.24311 5.38619 5.47093 5.47351 5.53564 5.60344 5.69072 5.70572 5.78545 5.82661 5.97447 6.01841 6.09408 6.21278 6.25771 6.28385 6.32005 6.88842 6.98537 7.15996 7.22127 7.25204 7.52051 7.72879 7.79918 7.96147 7.96717 8.19284 8.54276 8.78964 8.86690 10.09491 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.002861 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.339848 B = 9785.945162 C =10245.244741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.135 4.135 3 C 0.158 3.842 4 H 0.087 0.913 5 C -0.160 4.160 6 C 0.104 3.896 7 H 0.104 0.896 8 C -0.185 4.185 9 O -0.539 6.539 10 N -1.113 6.113 11 S 2.591 3.409 12 O -0.968 6.968 13 O -0.942 6.942 14 C -0.538 4.538 15 C -0.232 4.232 16 C -0.084 4.084 17 C -0.165 4.165 18 C 0.116 3.884 19 C -0.452 4.452 20 H 0.082 0.918 21 C 0.073 3.927 22 N -0.782 5.782 23 Si 0.913 3.087 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.225 4.225 28 C -0.070 4.070 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.078 0.922 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.061 0.939 38 H 0.063 0.937 39 H 0.360 0.640 40 H 0.407 0.593 41 H 0.117 0.883 42 H 0.118 0.882 43 H 0.093 0.907 44 H 0.123 0.877 45 H 0.284 0.716 46 H 0.098 0.902 47 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.624 -15.348 -2.828 20.073 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.174 4.174 3 C 0.050 3.950 4 H 0.105 0.895 5 C -0.200 4.200 6 C 0.045 3.955 7 H 0.121 0.879 8 C -0.243 4.243 9 O -0.342 6.342 10 N -0.867 5.867 11 S 2.688 3.312 12 O -0.959 6.959 13 O -0.932 6.932 14 C -0.667 4.667 15 C -0.236 4.236 16 C -0.103 4.103 17 C -0.185 4.185 18 C 0.113 3.887 19 C -0.481 4.481 20 H 0.100 0.900 21 C -0.147 4.147 22 N -0.407 5.407 23 Si 0.737 3.263 24 H -0.192 1.192 25 H -0.202 1.202 26 H -0.185 1.185 27 C -0.245 4.245 28 C -0.089 4.089 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.080 0.920 38 H 0.082 0.918 39 H 0.205 0.795 40 H 0.239 0.761 41 H 0.135 0.865 42 H 0.137 0.863 43 H 0.112 0.888 44 H 0.140 0.860 45 H 0.095 0.905 46 H 0.116 0.884 47 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 12.602 -13.987 -2.909 19.050 hybrid contribution -0.487 -0.671 0.543 0.991 sum 12.114 -14.658 -2.366 19.163 Atomic orbital electron populations 1.22034 0.95474 1.02126 1.02578 1.21961 0.96622 0.96351 1.02470 1.20677 0.94004 0.93013 0.87291 0.89504 1.22716 0.96025 0.98360 1.02855 1.21879 0.93230 0.90774 0.89659 0.87852 1.22532 0.97211 1.02622 1.01884 1.86853 1.75948 1.55400 1.16026 1.55889 1.69144 1.49026 1.12672 1.06178 0.76073 0.73821 0.75105 1.93525 1.86866 1.80405 1.35083 1.93537 1.70095 1.63798 1.65790 1.29323 1.18917 1.06797 1.11638 1.18118 1.06222 1.00844 0.98447 1.20610 0.96096 0.97556 0.96044 1.21332 1.01761 0.95327 1.00059 1.17727 0.89182 0.90848 0.90920 1.19710 1.22915 1.11578 0.93896 0.90014 1.26006 0.97095 0.96818 0.94739 1.69829 1.34799 1.35136 1.00896 0.86234 0.81294 0.79420 0.79360 1.19166 1.20155 1.18492 1.20976 1.01303 1.01317 1.00877 1.20438 0.97744 0.95487 0.95256 0.92075 0.92157 0.92478 0.91100 0.91463 0.90364 0.91236 0.92759 0.91978 0.91817 0.79511 0.76071 0.86515 0.86338 0.88845 0.85952 0.90468 0.88415 0.88796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.42 8.62 37.16 0.32 -1.10 16 2 C -0.13 -1.00 5.63 -26.73 -0.15 -1.15 16 3 C 0.16 1.49 2.21 -67.93 -0.15 1.34 16 4 H 0.09 0.89 7.66 -51.93 -0.40 0.49 16 5 C -0.16 -1.26 4.66 -26.73 -0.12 -1.39 16 6 C 0.10 1.10 3.27 -26.73 -0.09 1.01 16 7 H 0.10 1.30 8.14 -51.93 -0.42 0.87 16 8 C -0.18 -1.54 9.53 37.16 0.35 -1.18 16 9 O -0.54 -7.16 9.59 -55.14 -0.53 -7.69 16 10 N -1.11 -12.87 3.23 -4.89 -0.02 -12.89 16 11 S 2.59 45.46 4.94 -107.50 -0.53 44.92 16 12 O -0.97 -20.87 18.08 -57.54 -1.04 -21.91 16 13 O -0.94 -19.25 15.53 -65.66 -1.02 -20.27 16 14 C -0.54 -9.01 4.74 36.00 0.17 -8.84 16 15 C -0.23 -5.13 5.16 -104.33 -0.54 -5.66 16 16 C -0.08 -2.01 9.67 -39.66 -0.38 -2.39 16 17 C -0.17 -4.36 8.69 -38.87 -0.34 -4.69 16 18 C 0.12 3.12 5.57 -106.82 -0.60 2.53 16 19 C -0.45 -11.88 9.06 -37.74 -0.34 -12.22 16 20 H 0.08 2.04 7.90 -52.49 -0.41 1.63 16 21 C 0.07 1.81 5.16 -17.34 -0.09 1.73 16 22 N -0.78 -20.31 10.93 55.55 0.61 -19.70 16 23 Si 0.91 18.43 29.59 -169.99 -5.03 13.40 16 24 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.28 -5.48 7.11 56.52 0.40 -5.07 16 26 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 27 C -0.22 -5.59 9.80 -38.87 -0.38 -5.97 16 28 C -0.07 -1.59 9.67 -39.66 -0.38 -1.98 16 29 H 0.06 0.57 5.92 -51.93 -0.31 0.26 16 30 H 0.06 0.54 6.79 -51.93 -0.35 0.19 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 34 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.36 3.42 9.05 45.56 0.41 3.83 16 40 H 0.41 3.94 8.92 -34.47 -0.31 3.63 16 41 H 0.12 1.63 6.50 -51.93 -0.34 1.29 16 42 H 0.12 1.72 6.86 -51.92 -0.36 1.36 16 43 H 0.09 2.04 8.06 -52.48 -0.42 1.62 16 44 H 0.12 3.28 6.16 -52.49 -0.32 2.96 16 45 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 46 H 0.10 2.26 8.06 -52.49 -0.42 1.83 16 47 H 0.09 1.88 8.06 -52.49 -0.42 1.46 16 LS Contribution 386.14 15.07 5.82 5.82 Total: -1.00 -33.95 386.14 -11.05 -45.00 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: -6.59 Total: 13.29 kcal Atomic # 6 Polarization: -37.26 SS G_CDS: -2.72 Total: -39.98 kcal Atomic # 7 Polarization: -33.18 SS G_CDS: 0.59 Total: -32.59 kcal Atomic # 8 Polarization: -47.28 SS G_CDS: -2.59 Total: -49.86 kcal Atomic # 14 Polarization: 18.43 SS G_CDS: -5.03 Total: 13.40 kcal Atomic # 16 Polarization: 45.46 SS G_CDS: -0.53 Total: 44.92 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.95 -11.05 -45.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867903505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.983 kcal (2) G-P(sol) polarization free energy of solvation -33.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.937 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds