Wall clock time and date at job start Sat Apr 11 2020 06:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47273 * 2 1 4 4 H 1.09000 * 109.46981 * 302.63325 * 3 2 1 5 5 C 1.52996 * 109.47152 * 182.63609 * 3 2 1 6 6 C 1.53004 * 109.47127 * 174.99944 * 5 3 2 7 7 H 1.08996 * 109.47102 * 304.99849 * 6 5 3 8 8 C 1.52998 * 109.47210 * 184.99764 * 6 5 3 9 9 O 1.42896 * 109.47122 * 64.99786 * 6 5 3 10 10 N 1.46497 * 109.47068 * 62.63105 * 3 2 1 11 11 S 1.65603 * 120.00036 * 238.76921 * 10 3 2 12 12 O 1.42101 * 104.27495 * 182.28267 * 11 10 3 13 13 O 1.42096 * 104.27880 * 310.14008 * 11 10 3 14 14 C 1.81404 * 104.44638 * 66.21137 * 11 10 3 15 15 C 1.50697 * 109.47054 * 180.14957 * 14 11 10 16 16 C 1.38638 * 119.75284 * 269.73237 * 15 14 11 17 17 C 1.37611 * 120.25296 * 179.72289 * 16 15 14 18 18 C 1.40724 * 119.74190 * 0.56459 * 17 16 15 19 19 C 1.41395 * 120.24288 * 179.68714 * 18 17 16 20 20 H 1.07999 * 119.99436 * 205.02124 * 19 18 17 21 21 C 1.39939 * 120.00296 * 25.01791 * 19 18 17 22 22 N 1.30828 * 120.00056 * 16.75383 * 21 19 18 23 23 Si 1.86806 * 120.00094 * 196.76054 * 21 19 18 24 24 H 1.48499 * 109.47236 * 89.99371 * 23 21 19 25 25 H 1.48495 * 109.46972 * 209.99865 * 23 21 19 26 26 H 1.48504 * 109.46782 * 329.99873 * 23 21 19 27 27 C 1.40713 * 119.50974 * 359.70693 * 18 17 16 28 28 C 1.37622 * 119.74761 * 359.97438 * 27 18 17 29 29 H 1.08999 * 109.46716 * 297.07339 * 1 2 3 30 30 H 1.08998 * 109.47229 * 57.06813 * 1 2 3 31 31 H 1.08997 * 109.47061 * 177.07465 * 1 2 3 32 32 H 1.09005 * 109.46896 * 239.99922 * 2 1 3 33 33 H 1.08999 * 109.47643 * 119.99955 * 2 1 3 34 34 H 1.09004 * 109.47513 * 54.99759 * 5 3 2 35 35 H 1.09004 * 109.47193 * 295.00101 * 5 3 2 36 36 H 1.09005 * 109.47336 * 300.00153 * 8 6 5 37 37 H 1.09004 * 109.47242 * 59.99563 * 8 6 5 38 38 H 1.08996 * 109.47481 * 179.97438 * 8 6 5 39 39 H 0.96699 * 114.00183 * 59.99919 * 9 6 5 40 40 H 0.97004 * 119.99971 * 58.77461 * 10 3 2 41 41 H 1.08993 * 109.47153 * 300.15063 * 14 11 10 42 42 H 1.09003 * 109.47104 * 60.15192 * 14 11 10 43 43 H 1.08010 * 119.87089 * 359.97214 * 16 15 14 44 44 H 1.07999 * 120.13538 * 180.27596 * 17 16 15 45 45 H 0.97002 * 119.99849 * 180.02562 * 22 21 19 46 46 H 1.08000 * 120.12526 * 179.97438 * 27 18 17 47 47 H 1.07997 * 119.87452 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6387 1.9698 -0.8654 5 6 3.5686 1.4430 -0.0663 6 6 4.0732 2.8820 -0.1920 7 1 3.6007 3.3589 -1.0507 8 6 5.5911 2.8753 -0.3835 9 8 3.7460 3.6068 0.9952 10 7 1.6042 2.1146 1.2266 11 16 0.6722 3.4805 1.1360 12 8 0.4947 3.8740 2.4898 13 8 1.3615 4.3146 0.2150 14 6 -0.8977 2.9110 0.4275 15 6 -1.8400 4.0790 0.2906 16 6 -2.6970 4.3974 1.3328 17 6 -3.5577 5.4652 1.2211 18 6 -3.5742 6.2279 0.0385 19 6 -4.4590 7.3232 -0.0902 20 1 -4.7746 7.6500 -1.0700 21 6 -4.9257 7.9838 1.0518 22 7 -4.3142 7.8218 2.1970 23 14 -6.4219 9.0967 0.9411 24 1 -7.6496 8.3030 1.2017 25 1 -6.3090 10.1797 1.9509 26 1 -6.4965 9.6922 -0.4172 27 6 -2.7039 5.8920 -1.0150 28 6 -1.8469 4.8239 -0.8786 29 1 -0.3633 0.4677 0.9151 30 1 -0.3633 0.5587 -0.8625 31 1 -0.3633 -1.0263 -0.0524 32 1 1.8933 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8949 0.8666 -0.9320 35 1 3.9718 0.9945 0.8417 36 1 6.0636 2.3982 0.4752 37 1 5.8407 2.3222 -1.2891 38 1 5.9505 3.9003 -0.4735 39 1 4.1336 3.2379 1.8006 40 1 1.8616 1.7595 2.0918 41 1 -0.7159 2.4738 -0.5542 42 1 -1.3412 2.1612 1.0827 43 1 -2.6862 3.8075 2.2376 44 1 -4.2214 5.7143 2.0359 45 1 -4.6380 8.2793 2.9886 46 1 -2.7086 6.4702 -1.9271 47 1 -1.1779 4.5645 -1.6857 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867903505.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:06 Heat of formation + Delta-G solvation = -149.992783 kcal Electronic energy + Delta-G solvation = -28677.766813 eV Core-core repulsion = 24757.501494 eV Total energy + Delta-G solvation = -3920.265319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.58923 -39.46769 -37.85286 -37.02264 -36.66898 -35.94194 -33.27624 -32.55524 -32.34695 -31.28691 -29.66623 -29.05027 -26.00694 -24.91639 -23.02877 -22.25968 -22.17835 -21.85517 -20.28556 -19.29822 -18.50286 -17.57719 -17.27388 -17.08521 -17.02480 -16.36569 -16.03256 -15.89477 -15.70678 -15.40206 -15.28968 -14.79103 -14.56802 -14.34578 -13.92430 -13.82614 -13.68396 -13.48960 -13.31376 -13.05465 -12.97718 -12.85971 -12.82830 -12.78364 -12.71109 -12.65359 -12.32210 -12.20625 -12.18252 -11.96417 -11.71643 -11.61104 -11.52872 -11.44765 -11.34724 -11.06955 -10.90665 -10.03116 -9.47750 -9.25210 -8.69808 -6.41126 -0.56698 0.88668 1.05570 1.37154 1.50284 1.51914 2.10971 2.18211 2.64639 3.09695 3.42496 3.55782 3.65078 3.83057 3.84423 4.04555 4.09843 4.19584 4.29564 4.40066 4.42765 4.48139 4.51171 4.54556 4.65237 4.70069 4.81524 4.94364 4.98314 5.03129 5.08195 5.08920 5.12162 5.24939 5.25603 5.32850 5.34549 5.37733 5.50429 5.56841 5.60811 5.83608 6.01961 6.04285 6.28023 6.36133 6.60476 6.85151 6.93026 7.07385 8.27067 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.020792 B = 0.002861 C = 0.002732 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1346.339848 B = 9785.945162 C =10245.244741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.126 4.126 3 C 0.148 3.852 4 H 0.078 0.922 5 C -0.151 4.151 6 C 0.095 3.905 7 H 0.075 0.925 8 C -0.178 4.178 9 O -0.573 6.573 10 N -1.091 6.091 11 S 2.610 3.390 12 O -1.014 7.014 13 O -0.975 6.975 14 C -0.540 4.540 15 C -0.226 4.226 16 C -0.096 4.096 17 C -0.192 4.192 18 C 0.084 3.916 19 C -0.491 4.491 20 H 0.083 0.917 21 C 0.031 3.969 22 N -0.822 5.822 23 Si 0.990 3.010 24 H -0.259 1.259 25 H -0.268 1.268 26 H -0.256 1.256 27 C -0.243 4.243 28 C -0.078 4.078 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.092 0.908 33 H 0.081 0.919 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.079 0.921 38 H 0.045 0.955 39 H 0.373 0.627 40 H 0.420 0.580 41 H 0.151 0.849 42 H 0.146 0.854 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.291 0.709 46 H 0.106 0.894 47 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.972 -18.062 -3.463 23.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.165 4.165 3 C 0.041 3.959 4 H 0.096 0.904 5 C -0.190 4.190 6 C 0.036 3.964 7 H 0.093 0.907 8 C -0.235 4.235 9 O -0.378 6.378 10 N -0.851 5.851 11 S 2.707 3.293 12 O -1.004 7.004 13 O -0.964 6.964 14 C -0.669 4.669 15 C -0.230 4.230 16 C -0.116 4.116 17 C -0.212 4.212 18 C 0.081 3.919 19 C -0.520 4.520 20 H 0.101 0.899 21 C -0.185 4.185 22 N -0.447 5.447 23 Si 0.810 3.190 24 H -0.184 1.184 25 H -0.193 1.193 26 H -0.179 1.179 27 C -0.263 4.263 28 C -0.097 4.097 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.100 0.900 34 H 0.123 0.877 35 H 0.108 0.892 36 H 0.089 0.911 37 H 0.098 0.902 38 H 0.064 0.936 39 H 0.220 0.780 40 H 0.255 0.745 41 H 0.168 0.832 42 H 0.164 0.836 43 H 0.128 0.872 44 H 0.125 0.875 45 H 0.102 0.898 46 H 0.124 0.876 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 13.947 -16.704 -3.546 22.048 hybrid contribution -0.694 -0.043 0.702 0.988 sum 13.253 -16.747 -2.843 21.545 Atomic orbital electron populations 1.22128 0.96532 1.02770 1.01836 1.21919 0.95633 0.94698 1.04271 1.21018 0.95348 0.93998 0.85550 0.90419 1.22657 0.94499 0.96747 1.05088 1.21974 0.94547 0.91959 0.87924 0.90687 1.22449 0.95583 1.02051 1.03460 1.86809 1.76668 1.56924 1.17444 1.55275 1.67721 1.47616 1.14494 1.05041 0.76220 0.74485 0.73564 1.93469 1.87611 1.82021 1.37286 1.93509 1.70785 1.65760 1.66374 1.29396 1.17579 1.05484 1.14455 1.18550 1.05686 1.01553 0.97186 1.20923 0.96053 0.97196 0.97401 1.21343 1.03014 0.96818 1.00003 1.18086 0.90332 0.91700 0.91807 1.19961 1.24668 1.12644 0.94689 0.89914 1.26921 0.99676 0.98045 0.93861 1.69892 1.36464 1.36600 1.01794 0.85090 0.77033 0.77323 0.79575 1.18366 1.19264 1.17907 1.21232 1.01705 1.02441 1.00936 1.20839 0.97528 0.94846 0.96513 0.93015 0.92626 0.91341 0.88913 0.90013 0.87688 0.89207 0.91134 0.90234 0.93586 0.77992 0.74458 0.83156 0.83637 0.87161 0.87532 0.89809 0.87617 0.85771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.38 8.62 71.98 0.62 -1.76 16 2 C -0.13 -1.30 5.63 30.60 0.17 -1.13 16 3 C 0.15 2.28 2.21 44.99 0.10 2.38 16 4 H 0.08 1.38 7.66 -2.39 -0.02 1.36 16 5 C -0.15 -1.81 4.66 30.59 0.14 -1.66 16 6 C 0.09 1.83 3.27 30.60 0.10 1.93 16 7 H 0.08 1.85 8.14 -2.39 -0.02 1.83 16 8 C -0.18 -2.57 9.53 71.98 0.69 -1.89 16 9 O -0.57 -14.69 9.59 -129.95 -1.25 -15.94 16 10 N -1.09 -22.56 3.23 -169.39 -0.55 -23.11 16 11 S 2.61 88.80 4.94 -56.49 -0.28 88.52 16 12 O -1.01 -43.55 18.08 -127.65 -2.31 -45.85 16 13 O -0.97 -39.51 15.53 -119.89 -1.86 -41.37 16 14 C -0.54 -17.01 4.74 71.23 0.34 -16.67 16 15 C -0.23 -9.90 5.16 -19.68 -0.10 -10.00 16 16 C -0.10 -4.72 9.67 22.22 0.21 -4.50 16 17 C -0.19 -10.62 8.69 22.73 0.20 -10.42 16 18 C 0.08 4.70 5.57 -21.29 -0.12 4.58 16 19 C -0.49 -27.01 9.06 23.46 0.21 -26.80 16 20 H 0.08 4.33 7.90 -2.91 -0.02 4.31 16 21 C 0.03 1.57 5.16 85.25 0.44 2.01 16 22 N -0.82 -44.59 10.93 21.83 0.24 -44.35 16 23 Si 0.99 38.67 29.59 68.60 2.03 40.70 16 24 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 25 H -0.27 -9.99 7.11 99.48 0.71 -9.29 16 26 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 27 C -0.24 -12.45 9.80 22.73 0.22 -12.23 16 28 C -0.08 -3.56 9.67 22.22 0.21 -3.34 16 29 H 0.05 0.79 5.92 -2.39 -0.01 0.77 16 30 H 0.05 0.80 6.79 -2.39 -0.02 0.78 16 31 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.09 0.63 8.14 -2.38 -0.02 0.62 16 33 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 36 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 37 H 0.08 0.86 8.14 -2.38 -0.02 0.84 16 38 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 39 H 0.37 6.60 9.05 -74.06 -0.67 5.93 16 40 H 0.42 6.95 8.92 -96.74 -0.86 6.08 16 41 H 0.15 3.73 6.50 -2.39 -0.02 3.71 16 42 H 0.15 3.84 6.86 -2.39 -0.02 3.82 16 43 H 0.11 4.86 8.06 -2.91 -0.02 4.84 16 44 H 0.11 6.09 6.16 -2.91 -0.02 6.07 16 45 H 0.29 14.21 8.30 -92.71 -0.77 13.44 16 46 H 0.11 5.04 8.06 -2.91 -0.02 5.02 16 47 H 0.12 4.79 8.06 -2.91 -0.02 4.77 16 Total: -1.00 -78.39 386.14 -1.08 -79.48 By element: Atomic # 1 Polarization: 41.98 SS G_CDS: -0.55 Total: 41.44 kcal Atomic # 6 Polarization: -82.95 SS G_CDS: 3.44 Total: -79.51 kcal Atomic # 7 Polarization: -67.15 SS G_CDS: -0.31 Total: -67.46 kcal Atomic # 8 Polarization: -97.75 SS G_CDS: -5.42 Total: -103.16 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Atomic # 16 Polarization: 88.80 SS G_CDS: -0.28 Total: 88.52 kcal Total: -78.39 -1.08 -79.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867903505.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.518 kcal (2) G-P(sol) polarization free energy of solvation -78.395 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds