Wall clock time and date at job start Sat Apr 11 2020 06:19:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52997 * 109.47218 * 2 1 4 4 H 1.09001 * 109.47243 * 305.68275 * 3 2 1 5 5 C 1.53009 * 109.47223 * 185.67868 * 3 2 1 6 6 C 1.52998 * 109.46908 * 175.00069 * 5 3 2 7 7 H 1.09001 * 109.47357 * 305.00175 * 6 5 3 8 8 C 1.52996 * 109.47014 * 185.00007 * 6 5 3 9 9 O 1.42903 * 109.47011 * 65.00132 * 6 5 3 10 10 N 1.46499 * 109.47101 * 65.67924 * 3 2 1 11 11 S 1.65601 * 120.00054 * 237.28241 * 10 3 2 12 12 O 1.42091 * 106.40135 * 311.55294 * 11 10 3 13 13 O 1.42101 * 106.39919 * 178.63641 * 11 10 3 14 14 C 1.76198 * 107.21721 * 65.09630 * 11 10 3 15 15 C 1.38235 * 120.00112 * 86.31543 * 14 11 10 16 16 C 1.38241 * 119.99963 * 180.27708 * 15 14 11 17 17 C 1.38233 * 119.99669 * 359.46412 * 16 15 14 18 18 C 1.50706 * 119.99962 * 180.27996 * 17 16 15 19 19 C 1.50696 * 109.47034 * 270.27854 * 18 17 16 20 20 H 1.08008 * 120.00246 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99879 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99565 * 179.97438 * 21 19 18 23 23 Si 1.86793 * 119.99750 * 359.97438 * 21 19 18 24 24 H 1.48503 * 109.46974 * 90.00303 * 23 21 19 25 25 H 1.48499 * 109.46871 * 210.00052 * 23 21 19 26 26 H 1.48493 * 109.47309 * 330.00176 * 23 21 19 27 27 C 1.38234 * 120.00486 * 0.56045 * 17 16 15 28 28 C 1.38238 * 119.99978 * 266.33683 * 14 11 10 29 29 H 1.09003 * 109.47247 * 302.04976 * 1 2 3 30 30 H 1.08998 * 109.47381 * 62.05430 * 1 2 3 31 31 H 1.09003 * 109.47441 * 182.04906 * 1 2 3 32 32 H 1.09003 * 109.47216 * 239.99850 * 2 1 3 33 33 H 1.09002 * 109.47507 * 120.00294 * 2 1 3 34 34 H 1.09000 * 109.46881 * 295.00022 * 5 3 2 35 35 H 1.08999 * 109.46672 * 55.00021 * 5 3 2 36 36 H 1.08999 * 109.47261 * 60.00041 * 8 6 5 37 37 H 1.09004 * 109.47137 * 179.97438 * 8 6 5 38 38 H 1.09001 * 109.47196 * 300.00267 * 8 6 5 39 39 H 0.96696 * 114.00024 * 60.00085 * 9 6 5 40 40 H 0.97006 * 120.00231 * 57.27996 * 10 3 2 41 41 H 1.08002 * 120.00124 * 0.02562 * 15 14 11 42 42 H 1.07991 * 119.99969 * 179.72853 * 16 15 14 43 43 H 1.09002 * 109.46911 * 30.27731 * 18 17 16 44 44 H 1.08996 * 109.47199 * 150.27446 * 18 17 16 45 45 H 0.97003 * 119.99653 * 180.02562 * 22 21 19 46 46 H 1.07991 * 120.00620 * 179.72625 * 27 17 16 47 47 H 1.08002 * 119.99857 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5959 1.9849 -0.8347 5 6 3.5633 1.4448 -0.1427 6 6 4.0615 2.8860 -0.2680 7 1 3.5469 3.3779 -1.0934 8 6 5.5680 2.8834 -0.5353 9 8 3.7946 3.5895 0.9468 10 7 1.6664 2.0925 1.2586 11 16 0.7626 3.4799 1.2376 12 8 1.3794 4.3463 0.2953 13 8 0.5447 3.8374 2.5956 14 6 -0.8154 3.0644 0.5731 15 6 -1.8109 2.5850 1.4039 16 6 -3.0471 2.2536 0.8815 17 6 -3.2914 2.4121 -0.4698 18 6 -4.6411 2.0567 -1.0383 19 6 -4.6441 0.6095 -1.4582 20 1 -3.7572 0.0072 -1.3271 21 6 -5.7791 0.0540 -2.0100 22 7 -5.7815 -1.2089 -2.3769 23 14 -7.3132 1.0954 -2.2362 24 1 -7.2803 1.7414 -3.5729 25 1 -8.5171 0.2321 -2.1332 26 1 -7.3620 2.1405 -1.1824 27 6 -2.2959 2.8909 -1.3008 28 6 -1.0580 3.2174 -0.7793 29 1 -0.3634 0.5453 0.8710 30 1 -0.3634 0.4816 -0.9078 31 1 -0.3634 -1.0270 0.0367 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 4.0113 0.9806 0.7359 35 1 3.8456 0.8840 -1.0338 36 1 5.7716 2.3467 -1.4619 37 1 5.9229 3.9101 -0.6250 38 1 6.0826 2.3914 0.2900 39 1 4.2218 3.2066 1.7252 40 1 1.9485 1.7102 2.1044 41 1 -1.6215 2.4656 2.4604 42 1 -3.8233 1.8750 1.5298 43 1 -5.4081 2.2167 -0.2805 44 1 -4.8483 2.6865 -1.9034 45 1 -6.5799 -1.5995 -2.7654 46 1 -2.4853 3.0105 -2.3572 47 1 -0.2803 3.5919 -1.4283 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885346681.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:22 Heat of formation + Delta-G solvation = -145.265652 kcal Electronic energy + Delta-G solvation = -29024.614757 eV Core-core repulsion = 25104.554421 eV Total energy + Delta-G solvation = -3920.060336 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.27135 -39.45985 -38.06659 -36.99504 -36.71164 -35.51891 -33.52927 -32.59030 -32.43791 -31.93970 -29.68044 -29.14238 -25.23976 -24.95385 -23.72923 -22.28611 -22.19666 -21.97312 -20.49991 -19.02637 -18.97072 -18.23314 -17.35639 -17.04174 -16.74488 -16.54133 -16.02543 -15.97626 -15.55144 -15.38349 -15.29352 -14.79984 -14.66359 -14.52966 -14.44268 -14.12243 -13.81926 -13.62253 -13.46335 -13.31742 -13.02030 -12.93839 -12.88839 -12.72252 -12.56424 -12.42334 -12.33088 -12.18833 -12.07278 -11.94206 -11.86270 -11.73806 -11.71036 -11.46887 -11.44539 -10.95083 -10.81800 -10.09736 -9.90871 -9.85385 -8.32968 -6.38423 -0.44087 -0.00390 0.42736 1.34935 1.36867 1.47534 2.19745 2.32192 2.64267 2.99590 3.01649 3.48464 3.56755 3.84211 3.92574 3.98951 4.06296 4.10175 4.17220 4.28734 4.36440 4.48102 4.48476 4.50744 4.54405 4.68620 4.80862 4.81510 4.86396 4.92312 5.00874 5.01428 5.07239 5.13985 5.16132 5.19745 5.21344 5.32155 5.33592 5.39169 5.48822 5.50253 5.55639 5.80162 5.97153 6.21161 6.30986 6.67313 7.09779 7.25056 8.82937 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.019106 B = 0.003158 C = 0.002943 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.162720 B = 8864.915746 C = 9511.775208 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.123 4.123 3 C 0.157 3.843 4 H 0.077 0.923 5 C -0.152 4.152 6 C 0.100 3.900 7 H 0.081 0.919 8 C -0.179 4.179 9 O -0.573 6.573 10 N -1.085 6.085 11 S 2.727 3.273 12 O -0.964 6.964 13 O -0.998 6.998 14 C -0.700 4.700 15 C -0.021 4.021 16 C -0.152 4.152 17 C 0.000 4.000 18 C 0.010 3.990 19 C -0.518 4.518 20 H 0.034 0.966 21 C 0.013 3.987 22 N -0.944 5.944 23 Si 0.945 3.055 24 H -0.265 1.265 25 H -0.284 1.284 26 H -0.247 1.247 27 C -0.152 4.152 28 C -0.019 4.019 29 H 0.054 0.946 30 H 0.037 0.963 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.070 0.930 39 H 0.377 0.623 40 H 0.426 0.574 41 H 0.148 0.852 42 H 0.130 0.870 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.268 0.732 46 H 0.131 0.869 47 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.489 5.225 6.268 22.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.162 4.162 3 C 0.050 3.950 4 H 0.095 0.905 5 C -0.191 4.191 6 C 0.041 3.959 7 H 0.099 0.901 8 C -0.236 4.236 9 O -0.379 6.379 10 N -0.847 5.847 11 S 2.816 3.184 12 O -0.953 6.953 13 O -0.989 6.989 14 C -0.785 4.785 15 C -0.040 4.040 16 C -0.171 4.171 17 C -0.001 4.001 18 C -0.027 4.027 19 C -0.555 4.555 20 H 0.053 0.947 21 C -0.185 4.185 22 N -0.584 5.584 23 Si 0.769 3.231 24 H -0.190 1.190 25 H -0.210 1.210 26 H -0.170 1.170 27 C -0.170 4.170 28 C -0.039 4.039 29 H 0.073 0.927 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.103 0.897 33 H 0.104 0.896 34 H 0.113 0.887 35 H 0.117 0.883 36 H 0.092 0.908 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.225 0.775 40 H 0.263 0.737 41 H 0.166 0.834 42 H 0.147 0.853 43 H 0.054 0.946 44 H 0.054 0.946 45 H 0.077 0.923 46 H 0.149 0.851 47 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 21.240 6.368 5.890 22.943 hybrid contribution -1.405 -1.119 -0.069 1.798 sum 19.835 5.249 5.821 21.327 Atomic orbital electron populations 1.21890 0.97296 1.01177 1.01514 1.21890 0.94334 0.95904 1.04080 1.20877 0.95976 0.93531 0.84601 0.90473 1.22680 0.93845 0.97481 1.05113 1.21913 0.95016 0.91619 0.87336 0.90123 1.22445 0.95732 1.02240 1.03227 1.86705 1.75918 1.57224 1.18050 1.55121 1.68323 1.46555 1.14705 1.00817 0.72262 0.73122 0.72243 1.93538 1.74283 1.63136 1.64379 1.93504 1.86749 1.82477 1.36152 1.31040 1.23718 1.19792 1.03964 1.20927 0.91766 0.91759 0.99517 1.21279 0.98281 1.02353 0.95190 1.20493 0.96283 0.89357 0.93938 1.18833 0.91511 0.95601 0.96778 1.21015 0.98952 0.94633 1.40943 0.94744 1.25892 1.02176 0.96019 0.94395 1.70035 1.30572 1.14363 1.43465 0.85727 0.78269 0.79185 0.79950 1.19040 1.20962 1.17041 1.21294 0.93607 1.01739 1.00395 1.20962 0.96933 0.92751 0.93206 0.92745 0.94399 0.93771 0.89661 0.89578 0.88742 0.88251 0.90775 0.93073 0.91108 0.77467 0.73731 0.83409 0.85254 0.94593 0.94633 0.92298 0.85107 0.83185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.08 9.30 71.98 0.67 -3.41 16 2 C -0.12 -1.97 5.60 30.59 0.17 -1.80 16 3 C 0.16 2.48 2.27 44.99 0.10 2.58 16 4 H 0.08 1.43 7.71 -2.39 -0.02 1.42 16 5 C -0.15 -1.60 4.66 30.60 0.14 -1.46 16 6 C 0.10 1.49 3.30 30.59 0.10 1.59 16 7 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 8 C -0.18 -1.97 9.53 71.98 0.69 -1.28 16 9 O -0.57 -10.42 9.54 -130.10 -1.24 -11.66 16 10 N -1.09 -18.80 3.42 -169.38 -0.58 -19.38 16 11 S 2.73 71.29 5.11 -56.49 -0.29 71.01 16 12 O -0.96 -29.14 14.83 -120.08 -1.78 -30.93 16 13 O -1.00 -31.19 17.38 -128.00 -2.22 -33.41 16 14 C -0.70 -20.71 4.54 22.27 0.10 -20.61 16 15 C -0.02 -0.64 8.41 22.27 0.19 -0.45 16 16 C -0.15 -5.49 9.70 22.27 0.22 -5.27 16 17 C 0.00 -0.02 5.07 -19.86 -0.10 -0.12 16 18 C 0.01 0.45 4.17 29.10 0.12 0.57 16 19 C -0.52 -28.68 9.65 25.60 0.25 -28.43 16 20 H 0.03 2.13 7.98 -2.91 -0.02 2.10 16 21 C 0.01 0.73 5.47 84.66 0.46 1.19 16 22 N -0.94 -57.35 13.96 21.45 0.30 -57.06 16 23 Si 0.95 42.56 27.47 68.60 1.88 44.44 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 25 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 26 H -0.25 -10.31 6.54 99.48 0.65 -9.66 16 27 C -0.15 -5.40 9.70 22.27 0.22 -5.18 16 28 C -0.02 -0.60 9.20 22.27 0.20 -0.39 16 29 H 0.05 1.39 5.56 -2.39 -0.01 1.38 16 30 H 0.04 1.11 7.81 -2.39 -0.02 1.09 16 31 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 36 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 37 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 38 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 39 H 0.38 3.87 9.04 -74.06 -0.67 3.20 16 40 H 0.43 5.18 8.96 -96.74 -0.87 4.31 16 41 H 0.15 3.92 7.70 -2.91 -0.02 3.90 16 42 H 0.13 4.46 8.06 -2.92 -0.02 4.44 16 43 H 0.04 1.60 7.14 -2.39 -0.02 1.58 16 44 H 0.04 1.55 7.51 -2.39 -0.02 1.53 16 45 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 46 H 0.13 4.43 8.06 -2.92 -0.02 4.40 16 47 H 0.15 3.91 7.54 -2.91 -0.02 3.89 16 Total: -1.00 -74.98 387.71 -1.02 -76.00 By element: Atomic # 1 Polarization: 24.08 SS G_CDS: -0.62 Total: 23.46 kcal Atomic # 6 Polarization: -66.01 SS G_CDS: 3.53 Total: -62.48 kcal Atomic # 7 Polarization: -76.16 SS G_CDS: -0.28 Total: -76.44 kcal Atomic # 8 Polarization: -70.75 SS G_CDS: -5.25 Total: -76.00 kcal Atomic # 14 Polarization: 42.56 SS G_CDS: 1.88 Total: 44.44 kcal Atomic # 16 Polarization: 71.29 SS G_CDS: -0.29 Total: 71.01 kcal Total: -74.98 -1.02 -76.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885346681.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.262 kcal (2) G-P(sol) polarization free energy of solvation -74.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.247 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.019 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds