Wall clock time and date at job start Sat Apr 11 2020 06:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47182 * 2 1 4 4 H 1.09001 * 109.46796 * 305.01989 * 3 2 1 5 5 C 1.52995 * 109.47509 * 65.01936 * 3 2 1 6 6 C 1.53002 * 109.47353 * 185.00221 * 5 3 2 7 7 H 1.08994 * 109.47124 * 305.00199 * 6 5 3 8 8 C 1.53002 * 109.47380 * 184.99781 * 6 5 3 9 9 O 1.42908 * 109.46875 * 65.00016 * 6 5 3 10 10 N 1.46499 * 109.47333 * 185.02494 * 3 2 1 11 11 S 1.65597 * 120.00526 * 95.25050 * 10 3 2 12 12 O 1.42107 * 106.40113 * 311.92387 * 11 10 3 13 13 O 1.42101 * 106.40685 * 179.00093 * 11 10 3 14 14 C 1.76195 * 107.21879 * 65.45777 * 11 10 3 15 15 C 1.38237 * 119.99777 * 90.00216 * 14 11 10 16 16 C 1.38239 * 120.00136 * 180.02562 * 15 14 11 17 17 C 1.38235 * 119.99608 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99781 * 179.70358 * 17 16 15 19 19 C 1.50700 * 109.47282 * 89.99610 * 18 17 16 20 20 H 1.08003 * 120.00077 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00086 * 179.97438 * 19 18 17 22 22 N 1.31523 * 120.00054 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00166 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46842 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47098 * 120.00040 * 23 21 19 26 26 H 1.48498 * 109.47244 * 240.00260 * 23 21 19 27 27 C 1.38234 * 120.00534 * 359.97438 * 17 16 15 28 28 C 1.38235 * 120.00378 * 270.02666 * 14 11 10 29 29 H 1.09004 * 109.47427 * 173.83289 * 1 2 3 30 30 H 1.08999 * 109.47299 * 293.82999 * 1 2 3 31 31 H 1.09000 * 109.47627 * 53.83334 * 1 2 3 32 32 H 1.08997 * 109.46923 * 239.99213 * 2 1 3 33 33 H 1.09002 * 109.46820 * 119.99911 * 2 1 3 34 34 H 1.09000 * 109.47235 * 305.00252 * 5 3 2 35 35 H 1.08997 * 109.47412 * 65.00258 * 5 3 2 36 36 H 1.08999 * 109.46493 * 59.99754 * 8 6 5 37 37 H 1.08999 * 109.47168 * 179.97438 * 8 6 5 38 38 H 1.08994 * 109.47333 * 300.00290 * 8 6 5 39 39 H 0.96696 * 113.99773 * 60.00306 * 9 6 5 40 40 H 0.97003 * 119.99456 * 275.25500 * 10 3 2 41 41 H 1.08004 * 120.00225 * 0.02562 * 15 14 11 42 42 H 1.07990 * 120.00126 * 179.97438 * 16 15 14 43 43 H 1.08998 * 109.46798 * 209.99970 * 18 17 16 44 44 H 1.09004 * 109.46863 * 330.00210 * 18 17 16 45 45 H 0.96995 * 119.99781 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.00352 * 179.97438 * 27 17 16 47 47 H 1.08000 * 119.99800 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6050 1.9815 -0.8416 5 6 1.6357 2.1264 1.3075 6 6 2.0358 3.6023 1.2560 7 1 3.0999 3.6827 1.0344 8 6 1.7454 4.2570 2.6080 9 8 1.2854 4.2639 0.2355 10 7 3.5000 1.4443 -0.1210 11 16 4.2075 1.6181 -1.6081 12 8 3.5466 0.7073 -2.4758 13 8 5.6114 1.6032 -1.3888 14 6 3.8117 3.2341 -2.1882 15 6 4.6454 4.2971 -1.8951 16 6 4.3346 5.5650 -2.3498 17 6 3.1905 5.7698 -3.0981 18 6 2.8482 7.1532 -3.5881 19 6 3.4703 7.3746 -4.9428 20 1 4.0547 6.5916 -5.4031 21 6 3.2925 8.5761 -5.5950 22 7 2.5804 9.5295 -5.0347 23 14 4.0630 8.8503 -7.2745 24 1 4.8086 7.6323 -7.6817 25 1 2.9963 9.1326 -8.2684 26 1 4.9962 10.0035 -7.2087 27 6 2.3573 4.7067 -3.3921 28 6 2.6673 3.4390 -2.9360 29 1 -0.3634 -1.0217 -0.1104 30 1 -0.3634 0.4152 0.9400 31 1 -0.3634 0.6064 -0.8296 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5568 2.0469 1.4407 35 1 2.1415 1.6418 2.1426 36 1 2.3177 3.7522 3.3864 37 1 2.0309 5.3083 2.5715 38 1 0.6813 4.1765 2.8296 39 1 0.3281 4.2322 0.3682 40 1 4.0522 1.3435 0.6701 41 1 5.5395 4.1370 -1.3109 42 1 4.9857 6.3955 -2.1205 43 1 1.7656 7.2540 -3.6646 44 1 3.2334 7.8929 -2.8862 45 1 2.4557 10.3749 -5.4934 46 1 1.4632 4.8667 -3.9763 47 1 2.0159 2.6085 -3.1650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000885346682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:26 Heat of formation + Delta-G solvation = -129.409809 kcal Electronic energy + Delta-G solvation = -28789.031244 eV Core-core repulsion = 24869.658469 eV Total energy + Delta-G solvation = -3919.372775 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -38.89852 -38.61136 -37.09830 -36.27236 -35.69708 -33.60444 -32.40643 -31.63099 -31.46939 -30.44745 -28.13501 -27.34679 -24.69647 -23.65367 -22.25206 -21.87094 -20.98145 -20.79075 -19.50896 -17.87505 -17.30445 -16.78420 -16.38841 -16.03183 -15.78557 -15.15913 -14.97765 -14.90160 -14.43238 -14.29304 -14.22064 -13.74131 -13.57172 -13.09578 -12.99161 -12.74948 -12.66772 -12.54304 -12.19428 -12.10808 -11.96413 -11.87421 -11.76277 -11.65630 -11.60650 -11.44202 -11.41696 -11.06785 -10.87198 -10.86859 -10.72180 -10.47789 -10.39758 -10.12640 -9.70554 -9.60861 -9.46030 -8.50589 -8.42617 -8.25284 -6.12638 -4.17115 0.57894 1.47303 1.94818 3.11582 3.25903 3.33806 3.39475 3.82804 4.15231 4.23745 4.41752 4.44390 4.50559 4.57517 4.76584 4.93176 4.99342 5.01292 5.14118 5.21343 5.23519 5.23763 5.33538 5.34049 5.45472 5.53485 5.61799 5.72650 5.82743 5.83709 5.87493 5.90903 5.96775 6.03541 6.06945 6.16199 6.38980 6.45664 6.62372 6.86529 6.96203 7.02278 7.38586 7.55409 7.60586 7.69064 7.83107 8.19521 8.88161 9.47571 10.97413 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.003322 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.790873 B = 8427.158677 C = 9242.601763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.144 4.144 3 C 0.158 3.842 4 H 0.095 0.905 5 C -0.158 4.158 6 C 0.098 3.902 7 H 0.099 0.901 8 C -0.185 4.185 9 O -0.547 6.547 10 N -1.116 6.116 11 S 2.694 3.306 12 O -0.965 6.965 13 O -0.970 6.970 14 C -0.697 4.697 15 C -0.021 4.021 16 C -0.144 4.144 17 C 0.031 3.969 18 C 0.040 3.960 19 C -0.515 4.515 20 H 0.059 0.941 21 C 0.060 3.940 22 N -0.892 5.892 23 Si 0.897 3.103 24 H -0.271 1.271 25 H -0.282 1.282 26 H -0.282 1.282 27 C -0.139 4.139 28 C -0.015 4.015 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.059 0.941 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.082 0.918 35 H 0.077 0.923 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.056 0.944 39 H 0.369 0.631 40 H 0.413 0.587 41 H 0.125 0.875 42 H 0.125 0.875 43 H 0.034 0.966 44 H 0.033 0.967 45 H 0.263 0.737 46 H 0.125 0.875 47 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.529 -16.301 16.705 23.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.184 4.184 3 C 0.051 3.949 4 H 0.113 0.887 5 C -0.197 4.197 6 C 0.039 3.961 7 H 0.117 0.883 8 C -0.243 4.243 9 O -0.352 6.352 10 N -0.873 5.873 11 S 2.788 3.212 12 O -0.955 6.955 13 O -0.961 6.961 14 C -0.787 4.787 15 C -0.041 4.041 16 C -0.163 4.163 17 C 0.030 3.970 18 C 0.003 3.997 19 C -0.553 4.553 20 H 0.077 0.923 21 C -0.142 4.142 22 N -0.530 5.530 23 Si 0.725 3.275 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.209 1.209 27 C -0.158 4.158 28 C -0.035 4.035 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.100 0.900 35 H 0.095 0.905 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.075 0.925 39 H 0.215 0.785 40 H 0.247 0.753 41 H 0.143 0.857 42 H 0.143 0.857 43 H 0.052 0.948 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.143 0.857 47 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.598 -16.638 15.851 23.259 hybrid contribution -0.213 0.867 -0.214 0.918 sum -3.811 -15.771 15.636 22.533 Atomic orbital electron populations 1.21789 0.95190 1.02089 1.01921 1.22085 0.96308 0.96580 1.03396 1.20798 0.78681 0.95948 0.99512 0.88727 1.22693 1.02586 0.96820 0.97649 1.21922 0.97256 0.89569 0.87373 0.88276 1.22510 1.01958 1.02123 0.97704 1.86789 1.21630 1.78211 1.48534 1.55709 1.14651 1.90367 1.26571 1.01637 0.72718 0.74389 0.72501 1.93554 1.76186 1.61341 1.64400 1.93559 1.29649 1.87676 1.85189 1.30148 1.07835 1.21595 1.19116 1.20672 0.96076 0.92072 0.95281 1.21161 0.98185 0.96554 1.00354 1.21018 0.90730 0.98207 0.87001 1.18517 0.98063 0.86567 0.96523 1.21034 1.32695 0.99895 1.01700 0.92272 1.25002 0.95154 0.95876 0.98152 1.69965 1.39441 1.05238 1.38403 0.86445 0.79115 0.78305 0.83675 1.19579 1.20841 1.20851 1.21132 1.00963 0.92121 1.01581 1.20649 0.93091 0.97425 0.92337 0.92471 0.92645 0.92192 0.90231 0.91637 0.89977 0.90456 0.91893 0.91600 0.92460 0.78464 0.75293 0.85711 0.85724 0.94794 0.94855 0.92770 0.85728 0.85762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.52 37.16 0.35 -0.68 16 2 C -0.14 -1.18 5.73 -26.74 -0.15 -1.33 16 3 C 0.16 1.38 2.19 -67.94 -0.15 1.23 16 4 H 0.09 0.95 6.83 -51.93 -0.35 0.60 16 5 C -0.16 -1.05 4.36 -26.73 -0.12 -1.16 16 6 C 0.10 0.84 3.53 -26.73 -0.09 0.75 16 7 H 0.10 0.98 7.62 -51.93 -0.40 0.58 16 8 C -0.19 -1.34 9.53 37.16 0.35 -0.99 16 9 O -0.55 -5.91 12.79 -35.23 -0.45 -6.36 16 10 N -1.12 -10.87 4.84 -4.90 -0.02 -10.89 16 11 S 2.69 38.01 5.65 -107.50 -0.61 37.41 16 12 O -0.96 -15.65 16.51 -57.17 -0.94 -16.60 16 13 O -0.97 -16.00 17.28 -57.17 -0.99 -16.99 16 14 C -0.70 -11.25 5.85 -39.58 -0.23 -11.48 16 15 C -0.02 -0.36 9.52 -39.58 -0.38 -0.74 16 16 C -0.14 -2.77 9.70 -39.58 -0.38 -3.15 16 17 C 0.03 0.66 5.07 -104.62 -0.53 0.12 16 18 C 0.04 1.00 5.10 -29.03 -0.15 0.85 16 19 C -0.52 -14.19 9.09 -34.44 -0.31 -14.51 16 20 H 0.06 1.64 7.74 -52.48 -0.41 1.23 16 21 C 0.06 1.67 5.46 -17.82 -0.10 1.58 16 22 N -0.89 -25.82 13.29 55.43 0.74 -25.09 16 23 Si 0.90 21.37 29.54 -169.99 -5.02 16.35 16 24 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 C -0.14 -2.65 9.70 -39.58 -0.38 -3.03 16 28 C -0.02 -0.26 8.93 -39.58 -0.35 -0.61 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 30 H 0.05 0.30 6.76 -51.93 -0.35 -0.05 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.81 7.62 -51.93 -0.40 0.41 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.44 6.48 -51.93 -0.34 0.10 16 35 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.37 2.65 9.04 45.56 0.41 3.06 16 40 H 0.41 3.02 8.84 -34.47 -0.30 2.72 16 41 H 0.13 1.84 7.62 -52.48 -0.40 1.44 16 42 H 0.12 2.31 8.06 -52.49 -0.42 1.88 16 43 H 0.03 0.88 8.08 -51.93 -0.42 0.46 16 44 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 45 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 46 H 0.12 2.27 8.06 -52.49 -0.42 1.85 16 47 H 0.12 1.80 7.62 -52.49 -0.40 1.40 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -34.24 398.27 -10.63 -44.87 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: -6.71 Total: 4.47 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: -2.62 Total: -33.16 kcal Atomic # 7 Polarization: -36.69 SS G_CDS: 0.71 Total: -35.98 kcal Atomic # 8 Polarization: -37.57 SS G_CDS: -2.38 Total: -39.95 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: 38.01 SS G_CDS: -0.61 Total: 37.41 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.24 -10.63 -44.87 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885346682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.541 kcal (2) G-P(sol) polarization free energy of solvation -34.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds