Wall clock time and date at job start Sat Apr 11 2020 06:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52995 * 109.47182 * 2 1 4 4 H 1.09001 * 109.46796 * 305.01989 * 3 2 1 5 5 C 1.52995 * 109.47509 * 65.01936 * 3 2 1 6 6 C 1.53002 * 109.47353 * 185.00221 * 5 3 2 7 7 H 1.08994 * 109.47124 * 305.00199 * 6 5 3 8 8 C 1.53002 * 109.47380 * 184.99781 * 6 5 3 9 9 O 1.42908 * 109.46875 * 65.00016 * 6 5 3 10 10 N 1.46499 * 109.47333 * 185.02494 * 3 2 1 11 11 S 1.65597 * 120.00526 * 95.25050 * 10 3 2 12 12 O 1.42107 * 106.40113 * 311.92387 * 11 10 3 13 13 O 1.42101 * 106.40685 * 179.00093 * 11 10 3 14 14 C 1.76195 * 107.21879 * 65.45777 * 11 10 3 15 15 C 1.38237 * 119.99777 * 90.00216 * 14 11 10 16 16 C 1.38239 * 120.00136 * 180.02562 * 15 14 11 17 17 C 1.38235 * 119.99608 * 359.97438 * 16 15 14 18 18 C 1.50706 * 119.99781 * 179.70358 * 17 16 15 19 19 C 1.50700 * 109.47282 * 89.99610 * 18 17 16 20 20 H 1.08003 * 120.00077 * 0.02562 * 19 18 17 21 21 C 1.37870 * 120.00086 * 179.97438 * 19 18 17 22 22 N 1.31523 * 120.00054 * 0.02562 * 21 19 18 23 23 Si 1.86803 * 120.00166 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46842 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47098 * 120.00040 * 23 21 19 26 26 H 1.48498 * 109.47244 * 240.00260 * 23 21 19 27 27 C 1.38234 * 120.00534 * 359.97438 * 17 16 15 28 28 C 1.38235 * 120.00378 * 270.02666 * 14 11 10 29 29 H 1.09004 * 109.47427 * 173.83289 * 1 2 3 30 30 H 1.08999 * 109.47299 * 293.82999 * 1 2 3 31 31 H 1.09000 * 109.47627 * 53.83334 * 1 2 3 32 32 H 1.08997 * 109.46923 * 239.99213 * 2 1 3 33 33 H 1.09002 * 109.46820 * 119.99911 * 2 1 3 34 34 H 1.09000 * 109.47235 * 305.00252 * 5 3 2 35 35 H 1.08997 * 109.47412 * 65.00258 * 5 3 2 36 36 H 1.08999 * 109.46493 * 59.99754 * 8 6 5 37 37 H 1.08999 * 109.47168 * 179.97438 * 8 6 5 38 38 H 1.08994 * 109.47333 * 300.00290 * 8 6 5 39 39 H 0.96696 * 113.99773 * 60.00306 * 9 6 5 40 40 H 0.97003 * 119.99456 * 275.25500 * 10 3 2 41 41 H 1.08004 * 120.00225 * 0.02562 * 15 14 11 42 42 H 1.07990 * 120.00126 * 179.97438 * 16 15 14 43 43 H 1.08998 * 109.46798 * 209.99970 * 18 17 16 44 44 H 1.09004 * 109.46863 * 330.00210 * 18 17 16 45 45 H 0.96995 * 119.99781 * 179.97438 * 22 21 19 46 46 H 1.07999 * 120.00352 * 179.97438 * 27 17 16 47 47 H 1.08000 * 119.99800 * 359.97438 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6050 1.9815 -0.8416 5 6 1.6357 2.1264 1.3075 6 6 2.0358 3.6023 1.2560 7 1 3.0999 3.6827 1.0344 8 6 1.7454 4.2570 2.6080 9 8 1.2854 4.2639 0.2355 10 7 3.5000 1.4443 -0.1210 11 16 4.2075 1.6181 -1.6081 12 8 3.5466 0.7073 -2.4758 13 8 5.6114 1.6032 -1.3888 14 6 3.8117 3.2341 -2.1882 15 6 4.6454 4.2971 -1.8951 16 6 4.3346 5.5650 -2.3498 17 6 3.1905 5.7698 -3.0981 18 6 2.8482 7.1532 -3.5881 19 6 3.4703 7.3746 -4.9428 20 1 4.0547 6.5916 -5.4031 21 6 3.2925 8.5761 -5.5950 22 7 2.5804 9.5295 -5.0347 23 14 4.0630 8.8503 -7.2745 24 1 4.8086 7.6323 -7.6817 25 1 2.9963 9.1326 -8.2684 26 1 4.9962 10.0035 -7.2087 27 6 2.3573 4.7067 -3.3921 28 6 2.6673 3.4390 -2.9360 29 1 -0.3634 -1.0217 -0.1104 30 1 -0.3634 0.4152 0.9400 31 1 -0.3634 0.6064 -0.8296 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 0.5568 2.0469 1.4407 35 1 2.1415 1.6418 2.1426 36 1 2.3177 3.7522 3.3864 37 1 2.0309 5.3083 2.5715 38 1 0.6813 4.1765 2.8296 39 1 0.3281 4.2322 0.3682 40 1 4.0522 1.3435 0.6701 41 1 5.5395 4.1370 -1.3109 42 1 4.9857 6.3955 -2.1205 43 1 1.7656 7.2540 -3.6646 44 1 3.2334 7.8929 -2.8862 45 1 2.4557 10.3749 -5.4934 46 1 1.4632 4.8667 -3.9763 47 1 2.0159 2.6085 -3.1650 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885346682.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:25 Heat of formation + Delta-G solvation = -154.226194 kcal Electronic energy + Delta-G solvation = -28790.107363 eV Core-core repulsion = 24869.658469 eV Total energy + Delta-G solvation = -3920.448894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.17291 -39.51787 -38.31328 -37.05334 -36.92432 -35.57419 -33.29067 -33.11515 -32.28905 -31.89416 -29.21519 -28.73334 -25.56938 -25.30484 -23.68900 -22.50253 -22.43550 -21.63834 -20.62861 -19.04978 -18.59479 -18.40590 -17.64425 -16.93186 -16.83633 -16.53345 -16.23702 -15.95402 -15.63556 -15.47855 -15.22276 -14.97513 -14.60768 -14.40664 -14.19732 -13.94604 -13.85206 -13.40526 -13.36787 -13.31251 -13.22033 -13.14696 -13.10167 -12.68569 -12.67682 -12.64143 -12.54097 -12.30396 -12.13433 -12.01993 -11.97631 -11.68966 -11.63287 -11.40956 -11.33503 -10.84387 -10.65061 -10.32725 -9.87302 -9.86136 -8.26122 -6.38941 -0.58609 0.02651 0.48784 1.37299 1.38425 1.51577 2.04556 2.35766 2.60357 2.89024 3.06096 3.34969 3.54633 3.81410 3.91253 3.94880 3.99954 4.13141 4.21225 4.28774 4.37300 4.43672 4.52350 4.53120 4.55031 4.64582 4.70001 4.89253 4.91849 4.94923 4.99821 5.05164 5.15067 5.16804 5.27940 5.29028 5.29723 5.30853 5.37424 5.39730 5.44351 5.57885 5.68505 5.92029 5.98497 6.13178 6.16804 6.73093 7.03958 7.30054 8.84156 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.014090 B = 0.003322 C = 0.003029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1986.790873 B = 8427.158677 C = 9242.601763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.143 4.143 3 C 0.150 3.850 4 H 0.081 0.919 5 C -0.147 4.147 6 C 0.093 3.907 7 H 0.082 0.918 8 C -0.181 4.181 9 O -0.577 6.577 10 N -1.098 6.098 11 S 2.720 3.280 12 O -0.982 6.982 13 O -0.990 6.990 14 C -0.693 4.693 15 C -0.019 4.019 16 C -0.155 4.155 17 C 0.002 3.998 18 C 0.051 3.949 19 C -0.533 4.533 20 H 0.053 0.947 21 C 0.009 3.991 22 N -0.925 5.925 23 Si 0.965 3.035 24 H -0.268 1.268 25 H -0.274 1.274 26 H -0.275 1.275 27 C -0.147 4.147 28 C -0.009 4.009 29 H 0.060 0.940 30 H 0.073 0.927 31 H 0.052 0.948 32 H 0.057 0.943 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.078 0.922 37 H 0.044 0.956 38 H 0.070 0.930 39 H 0.382 0.618 40 H 0.428 0.572 41 H 0.150 0.850 42 H 0.123 0.877 43 H 0.012 0.988 44 H 0.009 0.991 45 H 0.267 0.733 46 H 0.125 0.875 47 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 -18.518 17.909 26.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.182 4.182 3 C 0.044 3.956 4 H 0.099 0.901 5 C -0.186 4.186 6 C 0.034 3.966 7 H 0.100 0.900 8 C -0.238 4.238 9 O -0.384 6.384 10 N -0.860 5.860 11 S 2.810 3.190 12 O -0.972 6.972 13 O -0.981 6.981 14 C -0.781 4.781 15 C -0.038 4.038 16 C -0.174 4.174 17 C 0.001 3.999 18 C 0.014 3.986 19 C -0.571 4.571 20 H 0.071 0.929 21 C -0.189 4.189 22 N -0.565 5.565 23 Si 0.789 3.211 24 H -0.193 1.193 25 H -0.199 1.199 26 H -0.200 1.200 27 C -0.166 4.166 28 C -0.028 4.028 29 H 0.079 0.921 30 H 0.092 0.908 31 H 0.071 0.929 32 H 0.076 0.924 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.097 0.903 37 H 0.064 0.936 38 H 0.089 0.911 39 H 0.230 0.770 40 H 0.266 0.734 41 H 0.167 0.833 42 H 0.141 0.859 43 H 0.030 0.970 44 H 0.028 0.972 45 H 0.076 0.924 46 H 0.143 0.857 47 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -3.604 -18.835 17.060 25.667 hybrid contribution -0.249 1.456 -0.476 1.552 sum -3.853 -17.379 16.584 24.329 Atomic orbital electron populations 1.21807 0.94127 1.02411 1.02673 1.22065 0.97236 0.95716 1.03206 1.21003 0.77474 0.96724 1.00412 0.90086 1.22635 1.04062 0.94984 0.96947 1.21996 0.96269 0.90918 0.87444 0.89951 1.22452 1.03123 1.00863 0.97374 1.86748 1.22999 1.78885 1.49761 1.55330 1.15492 1.89584 1.25590 1.00895 0.71987 0.73068 0.73026 1.93537 1.76472 1.61211 1.65951 1.93530 1.31254 1.87546 1.85736 1.30658 1.06851 1.22795 1.17767 1.20902 0.96885 0.91153 0.94828 1.21203 0.97732 0.97826 1.00615 1.20716 0.92781 0.96768 0.89613 1.18228 0.96248 0.88737 0.95397 1.21329 1.32794 0.99995 1.02932 0.92878 1.25869 0.95528 0.95543 1.02010 1.70071 1.40552 1.05767 1.40102 0.85402 0.78413 0.78295 0.78983 1.19251 1.19948 1.20029 1.21171 1.00817 0.92658 1.01972 1.20865 0.93519 0.96994 0.91439 0.92113 0.90767 0.92925 0.92410 0.89881 0.87968 0.88257 0.90332 0.93641 0.91071 0.76957 0.73445 0.83286 0.85866 0.96998 0.97239 0.92404 0.85698 0.83354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.66 9.52 71.98 0.69 -0.97 16 2 C -0.14 -1.94 5.73 30.59 0.18 -1.76 16 3 C 0.15 2.25 2.19 44.99 0.10 2.35 16 4 H 0.08 1.48 6.83 -2.39 -0.02 1.46 16 5 C -0.15 -1.46 4.36 30.59 0.13 -1.32 16 6 C 0.09 1.42 3.53 30.60 0.11 1.53 16 7 H 0.08 1.51 7.62 -2.39 -0.02 1.49 16 8 C -0.18 -2.27 9.53 71.98 0.69 -1.58 16 9 O -0.58 -12.06 12.79 -148.98 -1.91 -13.97 16 10 N -1.10 -18.70 4.84 -169.40 -0.82 -19.52 16 11 S 2.72 71.83 5.65 -56.49 -0.32 71.51 16 12 O -0.98 -30.17 16.51 -128.00 -2.11 -32.28 16 13 O -0.99 -30.73 17.28 -128.00 -2.21 -32.94 16 14 C -0.69 -21.67 5.85 22.27 0.13 -21.54 16 15 C -0.02 -0.62 9.52 22.27 0.21 -0.40 16 16 C -0.15 -6.13 9.70 22.27 0.22 -5.91 16 17 C 0.00 0.07 5.07 -19.86 -0.10 -0.03 16 18 C 0.05 2.70 5.10 29.10 0.15 2.84 16 19 C -0.53 -30.40 9.09 25.60 0.23 -30.17 16 20 H 0.05 3.02 7.74 -2.91 -0.02 3.00 16 21 C 0.01 0.53 5.46 84.65 0.46 0.99 16 22 N -0.93 -55.05 13.29 21.45 0.28 -54.77 16 23 Si 0.96 44.36 29.54 68.60 2.03 46.38 16 24 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 25 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 26 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 27 C -0.15 -5.74 9.70 22.27 0.22 -5.53 16 28 C -0.01 -0.30 8.93 22.27 0.20 -0.10 16 29 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 30 H 0.07 0.53 6.76 -2.39 -0.02 0.51 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.06 1.06 7.62 -2.39 -0.02 1.04 16 33 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.10 0.67 6.48 -2.39 -0.02 0.65 16 35 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.04 0.75 8.14 -2.39 -0.02 0.74 16 38 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.38 5.14 9.04 -74.06 -0.67 4.47 16 40 H 0.43 4.96 8.84 -96.74 -0.86 4.10 16 41 H 0.15 4.18 7.62 -2.91 -0.02 4.16 16 42 H 0.12 4.76 8.06 -2.92 -0.02 4.74 16 43 H 0.01 0.66 8.08 -2.39 -0.02 0.64 16 44 H 0.01 0.53 8.09 -2.39 -0.02 0.51 16 45 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 46 H 0.13 4.72 8.06 -2.91 -0.02 4.70 16 47 H 0.15 4.10 7.62 -2.91 -0.02 4.08 16 Total: -1.00 -75.18 398.27 -2.00 -77.18 By element: Atomic # 1 Polarization: 20.56 SS G_CDS: -0.55 Total: 20.01 kcal Atomic # 6 Polarization: -65.21 SS G_CDS: 3.60 Total: -61.61 kcal Atomic # 7 Polarization: -73.75 SS G_CDS: -0.54 Total: -74.28 kcal Atomic # 8 Polarization: -72.96 SS G_CDS: -6.23 Total: -79.20 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Atomic # 16 Polarization: 71.83 SS G_CDS: -0.32 Total: 71.51 kcal Total: -75.18 -2.00 -77.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885346682.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.045 kcal (2) G-P(sol) polarization free energy of solvation -75.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.005 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds