Wall clock time and date at job start Sat Apr 11 2020 06:19:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.46997 * 2 1 4 4 H 1.09002 * 109.47505 * 54.57883 * 3 2 1 5 5 C 1.52996 * 109.47014 * 174.57951 * 3 2 1 6 6 C 1.53006 * 109.47325 * 184.99978 * 5 3 2 7 7 H 1.08997 * 109.47078 * 54.99756 * 6 5 3 8 8 C 1.52999 * 109.47326 * 174.99972 * 6 5 3 9 9 O 1.42905 * 109.46682 * 294.99700 * 6 5 3 10 10 N 1.46499 * 109.47032 * 294.57428 * 3 2 1 11 11 S 1.65608 * 119.99746 * 110.43309 * 10 3 2 12 12 O 1.42104 * 106.39989 * 312.45785 * 11 10 3 13 13 O 1.42104 * 106.39996 * 179.53871 * 11 10 3 14 14 C 1.76196 * 107.21778 * 65.99923 * 11 10 3 15 15 C 1.38232 * 120.00068 * 90.00075 * 14 11 10 16 16 C 1.38233 * 119.99959 * 180.25474 * 15 14 11 17 17 C 1.38232 * 120.00211 * 359.51198 * 16 15 14 18 18 C 1.50698 * 120.00196 * 180.26022 * 17 16 15 19 19 C 1.50702 * 109.46982 * 270.20255 * 18 17 16 20 20 H 1.07997 * 119.99784 * 0.02562 * 19 18 17 21 21 C 1.37879 * 120.00095 * 179.97438 * 19 18 17 22 22 N 1.31516 * 120.00182 * 180.02562 * 21 19 18 23 23 Si 1.86806 * 119.99979 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47065 * 89.99799 * 23 21 19 25 25 H 1.48497 * 109.47041 * 209.99838 * 23 21 19 26 26 H 1.48500 * 109.46805 * 329.99941 * 23 21 19 27 27 C 1.38230 * 119.99740 * 0.46366 * 17 16 15 28 28 C 1.38231 * 120.00094 * 269.97528 * 14 11 10 29 29 H 1.08998 * 109.47213 * 301.12761 * 1 2 3 30 30 H 1.09000 * 109.46891 * 61.12678 * 1 2 3 31 31 H 1.08996 * 109.47310 * 181.12198 * 1 2 3 32 32 H 1.08997 * 109.47077 * 239.99684 * 2 1 3 33 33 H 1.08999 * 109.46637 * 119.99543 * 2 1 3 34 34 H 1.09004 * 109.47328 * 304.99877 * 5 3 2 35 35 H 1.08996 * 109.47628 * 64.99705 * 5 3 2 36 36 H 1.08999 * 109.47361 * 179.97438 * 8 6 5 37 37 H 1.09001 * 109.46960 * 299.99642 * 8 6 5 38 38 H 1.09000 * 109.46938 * 59.99431 * 8 6 5 39 39 H 0.96696 * 113.99775 * 179.97438 * 9 6 5 40 40 H 0.96993 * 120.00588 * 290.43387 * 10 3 2 41 41 H 1.08004 * 119.99836 * 359.97438 * 15 14 11 42 42 H 1.08000 * 119.99961 * 179.72516 * 16 15 14 43 43 H 1.08993 * 109.47514 * 30.20514 * 18 17 16 44 44 H 1.09005 * 109.47491 * 150.21093 * 18 17 16 45 45 H 0.96991 * 120.00310 * 180.02562 * 22 21 19 46 46 H 1.08003 * 120.00509 * 179.79298 * 27 17 16 47 47 H 1.08005 * 119.99750 * 0.02562 * 28 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5996 1.9836 0.8374 5 6 3.5639 1.4446 0.1363 6 6 4.0627 2.8856 0.2616 7 1 3.5516 3.3763 1.0899 8 6 5.5703 2.8826 0.5225 9 8 3.7906 3.5910 -0.9511 10 7 1.6612 2.0943 -1.2561 11 16 0.5175 3.2921 -1.2553 12 8 -0.5721 2.8059 -0.4835 13 8 0.3847 3.7210 -2.6036 14 6 1.1901 4.6548 -0.3636 15 6 1.9121 5.6276 -1.0293 16 6 2.4443 6.6940 -0.3288 17 6 2.2458 6.7929 1.0356 18 6 2.8209 7.9585 1.7982 19 6 4.2078 7.6115 2.2751 20 1 4.6305 6.6440 2.0483 21 6 4.9373 8.5298 3.0002 22 7 6.1477 8.2272 3.4160 23 14 4.2063 10.2037 3.3919 24 1 3.4766 10.1352 4.6835 25 1 5.2953 11.2083 3.4913 26 1 3.2660 10.5980 2.3124 27 6 1.5233 5.8203 1.7011 28 6 0.9952 4.7514 1.0015 29 1 -0.3633 0.5312 0.8797 30 1 -0.3633 0.4962 -0.8999 31 1 -0.3634 -1.0274 0.0201 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8500 0.8825 1.0253 35 1 4.0082 0.9817 -0.7448 36 1 5.9258 3.9092 0.6114 37 1 5.7778 2.3446 1.4475 38 1 6.0814 2.3919 -0.3057 39 1 4.0803 4.5135 -0.9430 40 1 2.0801 1.8245 -2.0882 41 1 2.0644 5.5521 -2.0958 42 1 3.0122 7.4517 -0.8482 43 1 2.8684 8.8310 1.1468 44 1 2.1865 8.1798 2.6565 45 1 6.6608 8.8730 3.9263 46 1 1.3710 5.8957 2.7677 47 1 0.4310 3.9913 1.5215 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000885346683.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:28 Heat of formation + Delta-G solvation = -142.671365 kcal Electronic energy + Delta-G solvation = -29602.871575 eV Core-core repulsion = 25682.923736 eV Total energy + Delta-G solvation = -3919.947839 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.149 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.27672 -39.25670 -38.21107 -37.01560 -36.78667 -35.49455 -33.48882 -32.66791 -32.47526 -31.85458 -29.63972 -29.16316 -25.21106 -24.99644 -23.68826 -22.25251 -21.95288 -21.80112 -20.52929 -19.03750 -18.96131 -18.36212 -17.96751 -17.17661 -16.69712 -16.35532 -15.94787 -15.72160 -15.57543 -15.53077 -15.30894 -14.90190 -14.54830 -14.39098 -14.11982 -14.09198 -13.71683 -13.61318 -13.54526 -13.27975 -13.20447 -13.09747 -13.03826 -12.66555 -12.56215 -12.54608 -12.37019 -12.17074 -12.05549 -11.92605 -11.79355 -11.74381 -11.63735 -11.57711 -11.36946 -10.85470 -10.80412 -10.14440 -9.84561 -9.78846 -8.31788 -6.36526 -0.43349 0.05368 0.47732 1.35060 1.37680 1.47399 2.15544 2.32820 2.64380 2.95775 3.03424 3.45074 3.48553 3.64348 3.94624 4.04645 4.07482 4.13733 4.20083 4.32579 4.35852 4.47336 4.52293 4.53823 4.57930 4.68021 4.82865 4.85336 4.91432 4.94065 4.98777 5.04286 5.11581 5.18787 5.19869 5.23468 5.24622 5.27772 5.33558 5.36950 5.51971 5.53941 5.61029 5.84617 6.01251 6.22497 6.32372 6.68990 6.80231 7.27179 8.83672 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.015361 B = 0.003847 C = 0.003446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.326643 B = 7276.465305 C = 8122.835132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.128 4.128 3 C 0.155 3.845 4 H 0.079 0.921 5 C -0.114 4.114 6 C 0.100 3.900 7 H 0.036 0.964 8 C -0.181 4.181 9 O -0.562 6.562 10 N -1.080 6.080 11 S 2.718 3.282 12 O -0.981 6.981 13 O -0.998 6.998 14 C -0.676 4.676 15 C -0.005 4.005 16 C -0.153 4.153 17 C 0.000 4.000 18 C 0.009 3.991 19 C -0.514 4.514 20 H 0.038 0.962 21 C 0.015 3.985 22 N -0.943 5.943 23 Si 0.941 3.059 24 H -0.268 1.268 25 H -0.286 1.286 26 H -0.247 1.247 27 C -0.153 4.153 28 C -0.023 4.023 29 H 0.050 0.950 30 H 0.041 0.959 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.091 0.909 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.033 0.967 37 H 0.069 0.931 38 H 0.070 0.930 39 H 0.373 0.627 40 H 0.425 0.575 41 H 0.147 0.853 42 H 0.131 0.869 43 H 0.035 0.965 44 H 0.032 0.968 45 H 0.267 0.733 46 H 0.127 0.873 47 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.556 -15.622 -7.522 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.167 4.167 3 C 0.048 3.952 4 H 0.097 0.903 5 C -0.152 4.152 6 C 0.041 3.959 7 H 0.054 0.946 8 C -0.239 4.239 9 O -0.369 6.369 10 N -0.841 5.841 11 S 2.809 3.191 12 O -0.971 6.971 13 O -0.988 6.988 14 C -0.764 4.764 15 C -0.024 4.024 16 C -0.172 4.172 17 C -0.001 4.001 18 C -0.028 4.028 19 C -0.552 4.552 20 H 0.056 0.944 21 C -0.182 4.182 22 N -0.583 5.583 23 Si 0.765 3.235 24 H -0.193 1.193 25 H -0.211 1.211 26 H -0.171 1.171 27 C -0.172 4.172 28 C -0.043 4.043 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.110 0.890 34 H 0.123 0.877 35 H 0.107 0.893 36 H 0.053 0.947 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.221 0.779 40 H 0.262 0.738 41 H 0.165 0.835 42 H 0.149 0.851 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.076 0.924 46 H 0.145 0.855 47 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -8.568 -16.126 -7.820 19.865 hybrid contribution 1.356 2.073 0.870 2.626 sum -7.212 -14.053 -6.950 17.257 Atomic orbital electron populations 1.21831 0.96123 1.01501 1.01926 1.21924 0.95767 0.94974 1.04082 1.20931 0.95116 0.94459 0.84688 0.90279 1.22041 0.94368 0.94013 1.04805 1.21768 0.93789 0.93624 0.86676 0.94616 1.22442 0.97241 1.01435 1.02753 1.86435 1.84756 1.28048 1.37649 1.55025 1.61113 1.51840 1.16107 1.00864 0.73219 0.72831 0.72200 1.93555 1.51072 1.79743 1.72724 1.93513 1.86477 1.82731 1.36083 1.30648 1.18450 1.20638 1.06653 1.20829 0.90725 0.90918 0.99901 1.21261 1.02158 0.99982 0.93798 1.20442 0.90298 0.95036 0.94303 1.18827 0.94934 0.93337 0.95672 1.21006 0.98802 1.01325 1.34055 0.94373 1.25830 0.94906 1.02442 0.95066 1.70020 1.12185 1.37423 1.38717 0.85796 0.78626 0.79269 0.79849 1.19278 1.21144 1.17070 1.21238 1.00157 0.95286 1.00503 1.20928 0.94328 0.96883 0.92119 0.93066 0.93985 0.91847 0.90118 0.89047 0.87696 0.89258 0.94735 0.91185 0.91084 0.77927 0.73793 0.83520 0.85085 0.94672 0.94977 0.92402 0.85471 0.83531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 8.74 71.98 0.63 -2.15 16 2 C -0.13 -1.74 5.61 30.59 0.17 -1.57 16 3 C 0.16 2.61 2.24 44.99 0.10 2.71 16 4 H 0.08 1.46 7.54 -2.39 -0.02 1.44 16 5 C -0.11 -1.77 4.69 30.60 0.14 -1.63 16 6 C 0.10 2.24 3.58 30.60 0.11 2.35 16 7 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 8 C -0.18 -4.25 9.53 71.98 0.69 -3.56 16 9 O -0.56 -13.06 9.17 -148.98 -1.37 -14.42 16 10 N -1.08 -20.66 3.21 -169.40 -0.54 -21.20 16 11 S 2.72 70.51 5.51 -56.49 -0.31 70.20 16 12 O -0.98 -28.51 14.63 -128.00 -1.87 -30.38 16 13 O -1.00 -31.19 17.28 -128.00 -2.21 -33.40 16 14 C -0.68 -18.98 4.81 22.27 0.11 -18.87 16 15 C 0.00 -0.13 6.98 22.27 0.16 0.02 16 16 C -0.15 -5.06 9.58 22.27 0.21 -4.84 16 17 C 0.00 -0.02 5.07 -19.87 -0.10 -0.12 16 18 C 0.01 0.41 4.17 29.10 0.12 0.54 16 19 C -0.51 -27.38 9.65 25.60 0.25 -27.14 16 20 H 0.04 2.24 7.98 -2.91 -0.02 2.22 16 21 C 0.02 0.85 5.47 84.65 0.46 1.31 16 22 N -0.94 -56.00 13.96 21.45 0.30 -55.71 16 23 Si 0.94 41.75 27.47 68.60 1.88 43.64 16 24 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 25 H -0.29 -12.60 7.11 99.48 0.71 -11.90 16 26 H -0.25 -10.18 6.54 99.48 0.65 -9.52 16 27 C -0.15 -5.16 9.70 22.27 0.22 -4.95 16 28 C -0.02 -0.68 9.25 22.27 0.21 -0.47 16 29 H 0.05 1.02 8.06 -2.39 -0.02 1.00 16 30 H 0.04 0.87 6.60 -2.39 -0.02 0.86 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.89 16 33 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 34 H 0.10 1.26 8.14 -2.38 -0.02 1.25 16 35 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.37 9.30 7.58 -74.06 -0.56 8.74 16 40 H 0.43 6.86 8.96 -96.75 -0.87 5.99 16 41 H 0.15 3.73 7.62 -2.91 -0.02 3.71 16 42 H 0.13 4.13 8.06 -2.91 -0.02 4.10 16 43 H 0.04 1.51 7.14 -2.39 -0.02 1.49 16 44 H 0.03 1.36 7.51 -2.38 -0.02 1.35 16 45 H 0.27 14.88 8.31 -92.71 -0.77 14.11 16 46 H 0.13 4.14 8.06 -2.91 -0.02 4.12 16 47 H 0.15 3.62 7.62 -2.91 -0.02 3.59 16 Total: -1.00 -67.97 385.36 -1.16 -69.13 By element: Atomic # 1 Polarization: 31.02 SS G_CDS: -0.51 Total: 30.50 kcal Atomic # 6 Polarization: -61.84 SS G_CDS: 3.47 Total: -58.37 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -0.24 Total: -76.91 kcal Atomic # 8 Polarization: -72.75 SS G_CDS: -5.45 Total: -78.20 kcal Atomic # 14 Polarization: 41.75 SS G_CDS: 1.88 Total: 43.64 kcal Atomic # 16 Polarization: 70.51 SS G_CDS: -0.31 Total: 70.20 kcal Total: -67.97 -1.16 -69.13 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000885346683.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.541 kcal (2) G-P(sol) polarization free energy of solvation -67.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds