Wall clock time and date at job start Sat Apr 11 2020 06:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17392 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46502 * 109.47158 * 175.37728 * 3 2 1 5 5 C 1.37098 * 119.99929 * 264.37859 * 4 3 2 6 6 H 1.08001 * 120.00041 * 194.42549 * 5 4 3 7 7 C 1.38953 * 120.00138 * 14.42283 * 5 4 3 8 8 N 1.31410 * 120.00193 * 23.70172 * 7 5 4 9 9 Si 1.86803 * 120.00053 * 203.70184 * 7 5 4 10 10 H 1.48491 * 109.47286 * 90.00013 * 9 7 5 11 11 H 1.48504 * 109.47007 * 210.00214 * 9 7 5 12 12 H 1.48504 * 109.46916 * 329.99585 * 9 7 5 13 13 C 1.34776 * 120.00161 * 84.36960 * 4 3 2 14 14 O 1.21288 * 120.00000 * 0.02562 * 13 4 3 15 15 C 1.50699 * 119.99950 * 180.02562 * 13 4 3 16 16 H 1.08998 * 110.05405 * 59.97248 * 15 13 4 17 17 C 1.53868 * 110.03444 * 298.55147 * 15 13 4 18 18 C 1.54274 * 106.59838 * 240.71460 * 17 15 13 19 19 C 1.54888 * 104.31012 * 336.32689 * 18 17 15 20 20 C 1.54266 * 110.03037 * 181.37976 * 15 13 4 21 21 H 1.09007 * 110.48359 * 24.08794 * 20 15 13 22 22 C 1.50698 * 110.49159 * 261.57609 * 20 15 13 23 23 O 1.21282 * 119.99830 * 0.02562 * 22 20 15 24 24 N 1.34774 * 120.00057 * 180.02562 * 22 20 15 25 25 C 1.46506 * 119.99739 * 179.97438 * 24 22 20 26 26 C 1.47203 * 109.46828 * 89.99749 * 25 24 22 27 27 C 7.38328 * 76.16009 * 224.97617 * 2 1 3 28 28 C 1.46490 * 120.00116 * 359.97438 * 24 22 20 29 29 C 1.47202 * 109.47298 * 90.00253 * 28 24 22 30 30 N 9.59197 * 115.45569 * 210.26861 * 2 1 3 31 31 H 4.40645 * 5.51540 * 180.02562 * 4 1 2 32 32 H 1.09005 * 109.47237 * 55.37922 * 3 2 1 33 33 H 1.08999 * 109.47354 * 295.38011 * 3 2 1 34 34 H 0.97001 * 120.00667 * 179.97438 * 8 7 5 35 35 H 1.09002 * 110.03719 * 121.43222 * 17 15 13 36 36 H 1.08999 * 110.03364 * 359.97438 * 17 15 13 37 37 H 1.09004 * 110.48487 * 95.06725 * 18 17 15 38 38 H 1.08999 * 110.48536 * 217.57713 * 18 17 15 39 39 H 1.09002 * 110.75479 * 156.32831 * 19 18 17 40 40 H 1.09003 * 110.75008 * 279.69043 * 19 18 17 41 41 H 1.09000 * 109.46984 * 209.99861 * 25 24 22 42 42 H 1.08996 * 109.46918 * 330.00117 * 25 24 22 43 43 H 7.54072 * 70.51293 * 230.86210 * 2 1 3 44 44 H 1.09007 * 109.47212 * 209.99802 * 28 24 22 45 45 H 1.08997 * 109.47772 * 330.00500 * 28 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3776 -0.1113 5 6 3.4716 1.8881 -1.3380 6 1 4.0427 2.8024 -1.4038 7 6 3.0794 1.2291 -2.4968 8 7 2.0394 0.4261 -2.4761 9 14 4.0306 1.4846 -4.0841 10 1 5.1185 0.4782 -4.1767 11 1 3.1130 1.3297 -5.2414 12 1 4.6162 2.8492 -4.0960 13 6 3.2500 2.1426 0.9922 14 8 2.9514 1.6910 2.0775 15 6 3.7512 3.5592 0.8775 16 1 3.0908 4.1382 0.2320 17 6 5.1820 3.5680 0.3117 18 6 6.0765 4.2218 1.3852 19 6 5.1017 5.0905 2.2185 20 6 3.8259 4.2080 2.2751 21 1 3.9228 3.4434 3.0460 22 6 2.6077 5.0583 2.5278 23 8 1.7456 5.1501 1.6796 24 7 2.4761 5.7169 3.6963 25 6 1.2920 6.5440 3.9417 26 6 0.2422 5.7242 4.5683 27 6 -0.5922 5.0713 5.0671 28 6 3.5170 5.6057 4.7210 29 6 4.5189 6.6652 4.5198 30 7 5.2967 7.4801 4.3655 31 1 -1.0503 -0.0003 0.0002 32 1 3.0096 -0.5831 -0.8457 33 1 3.0095 -0.4396 0.9285 34 1 1.7653 -0.0337 -3.2850 35 1 5.2162 4.1513 -0.6085 36 1 5.5142 2.5476 0.1204 37 1 6.5392 3.4596 2.0122 38 1 6.8392 4.8451 0.9184 39 1 5.4985 5.2653 3.2185 40 1 4.8967 6.0342 1.7128 41 1 1.5552 7.3673 4.6058 42 1 0.9253 6.9431 2.9960 43 1 -1.3416 4.4870 5.5138 44 1 3.0679 5.7133 5.7084 45 1 3.9989 4.6310 4.6453 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907979754.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:34 Heat of formation + Delta-G solvation = 74.227938 kcal Electronic energy + Delta-G solvation = -30300.285157 eV Core-core repulsion = 26286.591578 eV Total energy + Delta-G solvation = -4013.693580 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.91282 -40.47789 -38.10527 -38.00003 -36.86271 -36.57149 -34.11222 -33.80349 -33.26133 -30.79860 -30.40983 -29.56115 -27.96374 -27.48962 -26.48828 -23.18186 -21.94059 -21.37331 -20.42802 -19.79704 -19.34692 -19.02994 -18.39919 -17.97584 -17.50072 -17.38021 -16.51685 -16.40840 -16.20584 -15.73294 -15.67419 -15.42549 -14.99526 -14.90736 -14.49618 -14.34329 -14.25556 -13.99834 -13.84379 -13.82701 -13.58889 -13.41519 -13.09226 -12.78768 -12.66882 -12.52286 -12.46795 -12.20573 -12.05429 -11.77570 -11.66314 -11.64353 -11.49128 -11.19035 -11.15263 -11.12367 -10.78388 -10.62106 -10.32096 -10.20313 -9.83143 -8.26206 -5.83163 1.09074 1.42346 1.43109 1.49307 1.59069 1.75607 1.88581 1.89104 1.94265 2.14889 2.33646 2.40014 2.46896 2.95639 3.09958 3.16596 3.36444 3.52627 3.56024 3.78272 3.92183 4.01465 4.15812 4.34275 4.38548 4.43387 4.46591 4.48421 4.59173 4.61412 4.72937 4.76366 4.80456 4.92086 5.02114 5.08760 5.17544 5.23137 5.28347 5.36836 5.38101 5.43863 5.55605 5.80845 6.05429 6.42758 6.50885 6.68715 7.00278 7.10320 7.15063 7.58861 7.98931 8.74650 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.012118 B = 0.004062 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2310.105427 B = 6892.324679 C = 8249.955793 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.144 4.144 3 C 0.242 3.758 4 N -0.447 5.447 5 C -0.361 4.361 6 H 0.120 0.880 7 C -0.004 4.004 8 N -0.879 5.879 9 Si 0.980 3.020 10 H -0.269 1.269 11 H -0.292 1.292 12 H -0.259 1.259 13 C 0.459 3.541 14 O -0.629 6.629 15 C -0.076 4.076 16 H 0.076 0.924 17 C -0.107 4.107 18 C -0.112 4.112 19 C -0.102 4.102 20 C -0.096 4.096 21 H 0.125 0.875 22 C 0.529 3.471 23 O -0.565 6.565 24 N -0.604 5.604 25 C 0.221 3.779 26 C -0.236 4.236 27 C -0.181 4.181 28 C 0.198 3.802 29 C 0.212 3.788 30 N -0.454 5.454 31 H 0.232 0.768 32 H 0.098 0.902 33 H 0.068 0.932 34 H 0.268 0.732 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.143 0.857 42 H 0.091 0.909 43 H 0.240 0.760 44 H 0.171 0.829 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.526 8.856 13.574 16.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.283 4.283 2 C -0.146 4.146 3 C 0.119 3.881 4 N -0.163 5.163 5 C -0.487 4.487 6 H 0.137 0.863 7 C -0.208 4.208 8 N -0.516 5.516 9 Si 0.804 3.196 10 H -0.194 1.194 11 H -0.218 1.218 12 H -0.183 1.183 13 C 0.250 3.750 14 O -0.518 6.518 15 C -0.097 4.097 16 H 0.094 0.906 17 C -0.145 4.145 18 C -0.150 4.150 19 C -0.140 4.140 20 C -0.118 4.118 21 H 0.142 0.858 22 C 0.319 3.681 23 O -0.442 6.442 24 N -0.337 5.337 25 C 0.100 3.900 26 C -0.237 4.237 27 C -0.199 4.199 28 C 0.073 3.927 29 C -0.107 4.107 30 N -0.133 5.133 31 H 0.249 0.751 32 H 0.116 0.884 33 H 0.086 0.914 34 H 0.078 0.922 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.100 0.900 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.082 0.918 41 H 0.161 0.839 42 H 0.109 0.891 43 H 0.257 0.743 44 H 0.188 0.812 45 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 5.009 9.773 13.225 17.190 hybrid contribution -1.099 -0.710 -1.299 1.843 sum 3.910 9.063 11.926 15.481 Atomic orbital electron populations 1.25115 0.96450 1.00923 1.05764 1.23677 0.95383 0.99506 0.96007 1.18039 0.84212 0.85424 1.00381 1.43870 1.55474 1.10059 1.06901 1.20225 1.34541 1.12187 0.81790 0.86273 1.26085 0.95451 0.96966 1.02263 1.70288 1.21318 1.29896 1.30069 0.85120 0.78069 0.79437 0.76954 1.19435 1.21822 1.18308 1.20664 0.82229 0.88428 0.83716 1.90448 1.57725 1.75292 1.28357 1.21419 0.99140 0.92358 0.96803 0.90617 1.22129 0.91480 1.01855 0.99017 1.22363 0.97102 0.98907 0.96615 1.22697 0.92362 0.97231 1.01719 1.22171 0.93012 0.97650 0.98931 0.85761 1.21003 0.87643 0.78565 0.80909 1.90714 1.44156 1.63400 1.45891 1.47839 1.20493 1.49262 1.16075 1.18509 0.80209 0.90337 1.00972 1.23751 0.99006 1.01259 0.99709 1.25633 0.97539 0.96517 1.00199 1.19571 0.84092 0.94332 0.94690 1.29937 0.94044 0.94144 0.92589 1.81325 1.11495 1.11779 1.08671 0.75142 0.88380 0.91387 0.92244 0.91004 0.91524 0.89964 0.89305 0.88774 0.91779 0.83928 0.89123 0.74347 0.81185 0.83774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -12.55 19.25 74.32 1.43 -11.12 16 2 C -0.14 -7.51 11.68 31.13 0.36 -7.14 16 3 C 0.24 12.24 5.07 84.57 0.43 12.67 16 4 N -0.45 -22.77 2.58 -645.40 -1.67 -24.44 16 5 C -0.36 -18.10 8.40 84.04 0.71 -17.40 16 6 H 0.12 5.59 4.82 -2.91 -0.01 5.57 16 7 C 0.00 -0.22 4.84 84.93 0.41 0.19 16 8 N -0.88 -46.66 9.52 21.66 0.21 -46.46 16 9 Si 0.98 39.44 29.61 68.60 2.03 41.47 16 10 H -0.27 -10.43 7.11 99.48 0.71 -9.73 16 11 H -0.29 -12.00 7.11 99.48 0.71 -11.29 16 12 H -0.26 -9.92 7.11 99.48 0.71 -9.21 16 13 C 0.46 22.20 6.77 87.66 0.59 22.80 16 14 O -0.63 -32.32 15.09 -3.05 -0.05 -32.36 16 15 C -0.08 -2.99 1.84 -10.82 -0.02 -3.01 16 16 H 0.08 3.49 6.81 -2.39 -0.02 3.48 16 17 C -0.11 -3.47 4.61 31.32 0.14 -3.32 16 18 C -0.11 -2.64 6.82 31.67 0.22 -2.42 16 19 C -0.10 -2.36 4.76 32.01 0.15 -2.21 16 20 C -0.10 -2.97 1.63 -10.34 -0.02 -2.98 16 21 H 0.12 3.80 6.05 -2.38 -0.01 3.78 16 22 C 0.53 17.12 7.04 87.66 0.62 17.74 16 23 O -0.56 -24.28 15.00 -3.04 -0.05 -24.32 16 24 N -0.60 -13.09 2.39 -842.97 -2.02 -15.10 16 25 C 0.22 4.35 5.88 84.57 0.50 4.85 16 26 C -0.24 -5.43 13.66 31.16 0.43 -5.00 16 27 C -0.18 -3.87 19.24 74.35 1.43 -2.44 16 28 C 0.20 2.38 5.46 84.58 0.46 2.85 16 29 C 0.21 3.34 12.36 89.43 1.11 4.44 16 30 N -0.45 -9.73 18.50 20.02 0.37 -9.36 16 31 H 0.23 8.76 7.80 -4.40 -0.03 8.72 16 32 H 0.10 5.02 6.30 -2.38 -0.02 5.00 16 33 H 0.07 3.28 7.60 -2.39 -0.02 3.27 16 34 H 0.27 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.07 2.27 7.56 -2.39 -0.02 2.25 16 36 H 0.07 2.36 7.03 -2.39 -0.02 2.35 16 37 H 0.08 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.09 1.69 5.04 -2.39 -0.01 1.68 16 40 H 0.06 1.58 8.06 -2.39 -0.02 1.56 16 41 H 0.14 1.54 8.07 -2.39 -0.02 1.52 16 42 H 0.09 2.17 7.42 -2.39 -0.02 2.15 16 43 H 0.24 3.48 7.80 -4.42 -0.03 3.45 16 44 H 0.17 0.65 8.07 -2.38 -0.02 0.63 16 45 H 0.14 1.47 6.02 -2.39 -0.01 1.45 16 Total: -1.00 -77.97 382.36 8.81 -69.16 By element: Atomic # 1 Polarization: 31.90 SS G_CDS: 1.03 Total: 32.93 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: 8.95 Total: 8.48 kcal Atomic # 7 Polarization: -92.25 SS G_CDS: -3.11 Total: -95.36 kcal Atomic # 8 Polarization: -56.59 SS G_CDS: -0.09 Total: -56.69 kcal Atomic # 14 Polarization: 39.44 SS G_CDS: 2.03 Total: 41.47 kcal Total: -77.97 8.81 -69.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907979754.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.387 kcal (2) G-P(sol) polarization free energy of solvation -77.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds