Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47374 * 2 1 4 4 H 1.08996 * 109.46576 * 55.00389 * 3 2 1 5 5 C 1.50702 * 109.47100 * 175.00065 * 3 2 1 6 6 H 1.08004 * 119.99698 * 120.00383 * 5 3 2 7 7 C 1.37871 * 120.00281 * 300.00215 * 5 3 2 8 8 N 1.31519 * 119.99893 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00252 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47013 * 89.99900 * 9 7 5 11 11 H 1.48493 * 109.47507 * 210.00391 * 9 7 5 12 12 H 1.48501 * 109.46943 * 330.00409 * 9 7 5 13 13 N 1.46497 * 109.47218 * 295.00159 * 3 2 1 14 14 C 1.34780 * 119.99566 * 85.00262 * 13 3 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 3 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 13 18 18 C 1.34807 * 119.85078 * 269.72146 * 17 16 14 19 19 N 1.30423 * 121.76780 * 179.74468 * 18 17 16 20 20 C 1.34412 * 121.33342 * 0.53927 * 19 18 17 21 21 C 1.48147 * 120.23625 * 179.70899 * 20 19 18 22 22 C 1.39475 * 120.12801 * 179.75151 * 21 20 19 23 23 C 1.37984 * 119.86009 * 179.72812 * 22 21 20 24 24 C 1.38348 * 120.13559 * 0.54485 * 23 22 21 25 25 C 1.38353 * 120.26667 * 359.72622 * 24 23 22 26 26 C 1.37979 * 120.13536 * 359.97438 * 25 24 23 27 27 C 1.38445 * 119.52338 * 359.73532 * 20 19 18 28 28 C 1.34953 * 119.84779 * 90.00175 * 17 16 14 29 29 O 1.22025 * 120.65217 * 359.97438 * 28 17 16 30 30 H 1.08997 * 109.47148 * 59.99090 * 1 2 3 31 31 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46253 * 299.99739 * 1 2 3 33 33 H 1.09004 * 109.46993 * 240.00310 * 2 1 3 34 34 H 1.08994 * 109.47553 * 120.00597 * 2 1 3 35 35 H 0.96997 * 119.99814 * 179.97438 * 8 7 5 36 36 H 0.96995 * 120.00423 * 264.99567 * 13 3 2 37 37 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 38 38 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 39 39 H 1.07999 * 119.11430 * 0.02562 * 18 17 16 40 40 H 1.07996 * 120.06803 * 359.97438 * 22 21 20 41 41 H 1.07994 * 119.93330 * 180.29794 * 23 22 21 42 42 H 1.07994 * 119.86717 * 179.70816 * 24 23 22 43 43 H 1.08000 * 119.93162 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.06761 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.80952 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3364 2.1728 9 14 6.0051 0.8798 1.3810 10 1 6.4430 2.1127 2.0835 11 1 6.4392 -0.3113 2.1542 12 1 6.6132 0.8394 0.0268 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3667 15 8 -0.3395 2.6321 -0.4342 16 6 0.0363 3.3378 -2.6546 17 7 -1.3226 3.8702 -2.5268 18 6 -2.3781 3.1043 -2.8682 19 7 -3.6036 3.5385 -2.7647 20 6 -3.8705 4.7789 -2.3210 21 6 -5.2716 5.2494 -2.2192 22 6 -5.5463 6.5351 -1.7536 23 6 -6.8530 6.9696 -1.6663 24 6 -7.8902 6.1289 -2.0289 25 6 -7.6243 4.8504 -2.4861 26 6 -6.3214 4.4067 -2.5837 27 6 -2.8267 5.6138 -1.9603 28 6 -1.5117 5.1270 -2.0731 29 8 -0.5606 5.8274 -1.7666 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8294 -0.0620 2.9493 36 1 2.2719 2.1233 -1.9977 37 1 0.7277 4.1531 -2.8677 38 1 0.0672 2.6132 -3.4683 39 1 -2.2045 2.1027 -3.2329 40 1 -4.7377 7.1905 -1.4657 41 1 -7.0668 7.9666 -1.3105 42 1 -8.9115 6.4718 -1.9544 43 1 -8.4381 4.1988 -2.7681 44 1 -6.1151 3.4086 -2.9412 45 1 -3.0174 6.6141 -1.6008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000935401395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = -1.531434 kcal Electronic energy + Delta-G solvation = -28762.047099 eV Core-core repulsion = 24745.068347 eV Total energy + Delta-G solvation = -4016.978752 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.86290 -39.51891 -38.93121 -37.49913 -35.65794 -34.86395 -32.54757 -32.17276 -31.32317 -31.07294 -30.14853 -28.41831 -26.76333 -25.02253 -24.23727 -23.06467 -22.51506 -21.61517 -20.64957 -19.50704 -18.38859 -17.86678 -17.61346 -17.14533 -16.61809 -16.11490 -15.42375 -15.16480 -15.11328 -15.04989 -14.84340 -14.45555 -14.22486 -14.05727 -13.63552 -13.48076 -13.26660 -13.11375 -12.80867 -12.72444 -12.68597 -11.89691 -11.65987 -11.49609 -11.36753 -11.33603 -11.04508 -11.02005 -10.89290 -10.38588 -10.27949 -10.18833 -10.10088 -9.72915 -9.41451 -9.21483 -9.13244 -8.94244 -8.56136 -8.31026 -7.97781 -6.17447 -4.27334 0.11215 1.14866 1.21456 1.98547 2.33197 3.10464 3.22158 3.29058 3.30153 3.36658 3.70268 3.75619 3.98577 4.23307 4.32136 4.50647 4.57130 4.69498 4.78925 4.84234 5.06116 5.13033 5.15111 5.15792 5.26707 5.33526 5.41985 5.48704 5.72636 5.80174 6.05012 6.19956 6.22865 6.29311 6.32626 6.33331 6.55010 6.56595 6.67223 6.91516 7.09413 7.24413 7.31122 7.52350 7.63477 7.65475 7.81693 7.86785 8.10272 8.48899 8.68286 8.94367 9.39804 10.87904 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.002239 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.637804 B =12501.531187 C =12843.076162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C 0.271 3.729 4 H 0.049 0.951 5 C -0.536 4.536 6 H 0.062 0.938 7 C 0.067 3.933 8 N -0.882 5.882 9 Si 0.902 3.098 10 H -0.279 1.279 11 H -0.285 1.285 12 H -0.273 1.273 13 N -0.700 5.700 14 C 0.489 3.511 15 O -0.536 6.536 16 C 0.062 3.938 17 N -0.501 5.501 18 C 0.394 3.606 19 N -0.539 5.539 20 C 0.217 3.783 21 C -0.056 4.056 22 C -0.091 4.091 23 C -0.127 4.127 24 C -0.106 4.106 25 C -0.130 4.130 26 C -0.072 4.072 27 C -0.281 4.281 28 C 0.526 3.474 29 O -0.533 6.533 30 H 0.034 0.966 31 H 0.024 0.976 32 H 0.049 0.951 33 H 0.032 0.968 34 H 0.100 0.900 35 H 0.265 0.735 36 H 0.390 0.610 37 H 0.127 0.873 38 H 0.121 0.879 39 H 0.204 0.796 40 H 0.130 0.870 41 H 0.127 0.873 42 H 0.123 0.877 43 H 0.126 0.874 44 H 0.138 0.862 45 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.095 6.646 -13.911 23.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.166 4.166 3 C 0.170 3.830 4 H 0.067 0.933 5 C -0.574 4.574 6 H 0.080 0.920 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.730 3.270 10 H -0.205 1.205 11 H -0.211 1.211 12 H -0.198 1.198 13 N -0.348 5.348 14 C 0.271 3.729 15 O -0.413 6.413 16 C -0.064 4.064 17 N -0.217 5.217 18 C 0.110 3.890 19 N -0.261 5.261 20 C 0.099 3.901 21 C -0.057 4.057 22 C -0.110 4.110 23 C -0.145 4.145 24 C -0.124 4.124 25 C -0.148 4.148 26 C -0.090 4.090 27 C -0.305 4.305 28 C 0.326 3.674 29 O -0.411 6.411 30 H 0.053 0.947 31 H 0.043 0.957 32 H 0.068 0.932 33 H 0.051 0.949 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.223 0.777 37 H 0.145 0.855 38 H 0.139 0.861 39 H 0.220 0.780 40 H 0.147 0.853 41 H 0.145 0.855 42 H 0.141 0.859 43 H 0.144 0.856 44 H 0.156 0.844 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -18.693 6.619 -12.981 23.701 hybrid contribution 1.977 0.384 0.107 2.017 sum -16.716 7.003 -12.875 22.231 Atomic orbital electron populations 1.21821 0.98380 0.98085 1.00974 1.21940 0.92521 0.99676 1.02476 1.18837 0.94402 0.89132 0.80645 0.93295 1.21205 0.90532 1.39199 1.06471 0.91979 1.24889 0.98726 0.94728 0.95335 1.69889 1.35219 1.37452 1.09329 0.86435 0.84681 0.77691 0.78226 1.20528 1.21050 1.19817 1.46438 1.13977 1.55471 1.18909 1.20277 0.83785 0.79985 0.88838 1.90741 1.51493 1.59323 1.39782 1.22032 0.83286 1.01782 0.99321 1.46329 1.08783 1.14721 1.51834 1.24809 0.81452 0.96056 0.86709 1.68316 1.17815 1.15621 1.24390 1.19911 0.92948 0.88335 0.88938 1.18461 0.90233 0.94551 1.02443 1.21335 0.97356 0.94805 0.97506 1.21078 0.92325 1.00144 1.00914 1.21330 0.99273 0.94078 0.97699 1.21177 0.96675 0.96312 1.00625 1.21402 0.91536 0.99856 0.96243 1.23053 0.90626 1.03884 1.12976 1.17004 0.91139 0.80408 0.78822 1.90979 1.43564 1.56319 1.50191 0.94659 0.95684 0.93220 0.94875 0.88156 0.92489 0.77700 0.85460 0.86058 0.77955 0.85261 0.85543 0.85866 0.85593 0.84410 0.82776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.52 37.16 0.32 -2.52 16 2 C -0.13 -2.94 5.45 -26.73 -0.15 -3.08 16 3 C 0.27 6.57 2.24 -69.08 -0.15 6.41 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.77 8.73 -34.44 -0.30 -14.07 16 6 H 0.06 1.52 7.74 -52.48 -0.41 1.12 16 7 C 0.07 1.76 5.29 -17.82 -0.09 1.67 16 8 N -0.88 -24.39 11.29 55.43 0.63 -23.76 16 9 Si 0.90 20.38 29.54 -169.99 -5.02 15.36 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 12 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 13 N -0.70 -13.32 5.02 -54.93 -0.28 -13.60 16 14 C 0.49 8.84 6.47 -10.98 -0.07 8.77 16 15 O -0.54 -11.97 13.57 5.56 0.08 -11.89 16 16 C 0.06 0.78 5.84 -5.19 -0.03 0.75 16 17 N -0.50 -6.85 2.06 -122.57 -0.25 -7.11 16 18 C 0.39 4.43 11.45 -90.65 -1.04 3.40 16 19 N -0.54 -6.66 9.53 -10.80 -0.10 -6.76 16 20 C 0.22 2.82 6.75 -82.59 -0.56 2.27 16 21 C -0.06 -0.63 5.88 -104.91 -0.62 -1.25 16 22 C -0.09 -0.89 9.43 -39.21 -0.37 -1.26 16 23 C -0.13 -1.02 10.03 -39.63 -0.40 -1.42 16 24 C -0.11 -0.80 10.04 -39.50 -0.40 -1.19 16 25 C -0.13 -1.05 10.03 -39.63 -0.40 -1.45 16 26 C -0.07 -0.72 9.59 -39.22 -0.38 -1.09 16 27 C -0.28 -4.00 9.47 -38.59 -0.37 -4.37 16 28 C 0.53 8.74 7.43 -15.26 -0.11 8.63 16 29 O -0.53 -10.73 16.76 4.90 0.08 -10.64 16 30 H 0.03 0.68 5.64 -51.93 -0.29 0.39 16 31 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 1.15 7.85 -51.93 -0.41 0.74 16 33 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 34 H 0.10 2.61 5.95 -51.93 -0.31 2.30 16 35 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 36 H 0.39 6.18 8.54 -40.82 -0.35 5.83 16 37 H 0.13 1.58 7.44 -51.93 -0.39 1.19 16 38 H 0.12 0.89 8.00 -51.93 -0.42 0.47 16 39 H 0.20 1.40 8.01 -52.49 -0.42 0.98 16 40 H 0.13 1.12 6.24 -52.49 -0.33 0.80 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.12 0.63 8.06 -52.49 -0.42 0.21 16 43 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 44 H 0.14 1.32 7.56 -52.48 -0.40 0.92 16 45 H 0.15 1.94 6.26 -52.49 -0.33 1.62 16 LS Contribution 377.28 15.07 5.69 5.69 Total: -1.00 -34.96 377.28 -9.97 -44.93 By element: Atomic # 1 Polarization: 13.30 SS G_CDS: -5.68 Total: 7.62 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -5.11 Total: 0.17 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: 0.00 Total: -51.22 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: 0.16 Total: -22.54 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.96 -9.97 -44.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935401395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.401 kcal (2) G-P(sol) polarization free energy of solvation -34.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds