Wall clock time and date at job start Sat Apr 11 2020 06:19:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47374 * 2 1 4 4 H 1.08996 * 109.46576 * 55.00389 * 3 2 1 5 5 C 1.50702 * 109.47100 * 175.00065 * 3 2 1 6 6 H 1.08004 * 119.99698 * 120.00383 * 5 3 2 7 7 C 1.37871 * 120.00281 * 300.00215 * 5 3 2 8 8 N 1.31519 * 119.99893 * 0.02562 * 7 5 3 9 9 Si 1.86802 * 120.00252 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.47013 * 89.99900 * 9 7 5 11 11 H 1.48493 * 109.47507 * 210.00391 * 9 7 5 12 12 H 1.48501 * 109.46943 * 330.00409 * 9 7 5 13 13 N 1.46497 * 109.47218 * 295.00159 * 3 2 1 14 14 C 1.34780 * 119.99566 * 85.00262 * 13 3 2 15 15 O 1.21280 * 120.00423 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99795 * 180.02562 * 14 13 3 17 17 N 1.46499 * 109.46992 * 179.97438 * 16 14 13 18 18 C 1.34807 * 119.85078 * 269.72146 * 17 16 14 19 19 N 1.30423 * 121.76780 * 179.74468 * 18 17 16 20 20 C 1.34412 * 121.33342 * 0.53927 * 19 18 17 21 21 C 1.48147 * 120.23625 * 179.70899 * 20 19 18 22 22 C 1.39475 * 120.12801 * 179.75151 * 21 20 19 23 23 C 1.37984 * 119.86009 * 179.72812 * 22 21 20 24 24 C 1.38348 * 120.13559 * 0.54485 * 23 22 21 25 25 C 1.38353 * 120.26667 * 359.72622 * 24 23 22 26 26 C 1.37979 * 120.13536 * 359.97438 * 25 24 23 27 27 C 1.38445 * 119.52338 * 359.73532 * 20 19 18 28 28 C 1.34953 * 119.84779 * 90.00175 * 17 16 14 29 29 O 1.22025 * 120.65217 * 359.97438 * 28 17 16 30 30 H 1.08997 * 109.47148 * 59.99090 * 1 2 3 31 31 H 1.08997 * 109.47090 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.46253 * 299.99739 * 1 2 3 33 33 H 1.09004 * 109.46993 * 240.00310 * 2 1 3 34 34 H 1.08994 * 109.47553 * 120.00597 * 2 1 3 35 35 H 0.96997 * 119.99814 * 179.97438 * 8 7 5 36 36 H 0.96995 * 120.00423 * 264.99567 * 13 3 2 37 37 H 1.09002 * 109.47060 * 299.99722 * 16 14 13 38 38 H 1.09001 * 109.47380 * 59.99809 * 16 14 13 39 39 H 1.07999 * 119.11430 * 0.02562 * 18 17 16 40 40 H 1.07996 * 120.06803 * 359.97438 * 22 21 20 41 41 H 1.07994 * 119.93330 * 180.29794 * 23 22 21 42 42 H 1.07994 * 119.86717 * 179.70816 * 24 23 22 43 43 H 1.08000 * 119.93162 * 180.02562 * 25 24 23 44 44 H 1.08004 * 120.06761 * 180.02562 * 26 25 24 45 45 H 1.07994 * 120.80952 * 180.02562 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9814 0.8418 5 6 3.5420 1.4442 0.1238 6 1 4.1473 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3364 2.1728 9 14 6.0051 0.8798 1.3810 10 1 6.4430 2.1127 2.0835 11 1 6.4392 -0.3113 2.1542 12 1 6.6132 0.8394 0.0268 13 7 1.6525 2.0975 -1.2518 14 6 0.4352 2.6645 -1.3667 15 8 -0.3395 2.6321 -0.4342 16 6 0.0363 3.3378 -2.6546 17 7 -1.3226 3.8702 -2.5268 18 6 -2.3781 3.1043 -2.8682 19 7 -3.6036 3.5385 -2.7647 20 6 -3.8705 4.7789 -2.3210 21 6 -5.2716 5.2494 -2.2192 22 6 -5.5463 6.5351 -1.7536 23 6 -6.8530 6.9696 -1.6663 24 6 -7.8902 6.1289 -2.0289 25 6 -7.6243 4.8504 -2.4861 26 6 -6.3214 4.4067 -2.5837 27 6 -2.8267 5.6138 -1.9603 28 6 -1.5117 5.1270 -2.0731 29 8 -0.5606 5.8274 -1.7666 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3632 0.5138 0.8901 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 3.8294 -0.0620 2.9493 36 1 2.2719 2.1233 -1.9977 37 1 0.7277 4.1531 -2.8677 38 1 0.0672 2.6132 -3.4683 39 1 -2.2045 2.1027 -3.2329 40 1 -4.7377 7.1905 -1.4657 41 1 -7.0668 7.9666 -1.3105 42 1 -8.9115 6.4718 -1.9544 43 1 -8.4381 4.1988 -2.7681 44 1 -6.1151 3.4086 -2.9412 45 1 -3.0174 6.6141 -1.6008 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000935401395.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:37 Heat of formation + Delta-G solvation = -23.170182 kcal Electronic energy + Delta-G solvation = -28762.985426 eV Core-core repulsion = 24745.068347 eV Total energy + Delta-G solvation = -4017.917079 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.94696 -40.68867 -40.02802 -38.64817 -37.15628 -36.21335 -34.36619 -33.16656 -32.81916 -31.94468 -31.13137 -29.72953 -28.41157 -26.03257 -25.30334 -24.81446 -23.23048 -22.58684 -22.12784 -21.22230 -19.42028 -19.26111 -18.72614 -18.20787 -17.78381 -17.41050 -17.06446 -16.60271 -16.41797 -15.94209 -15.92175 -15.79880 -15.32611 -15.03791 -14.77377 -14.58598 -14.40888 -14.30994 -14.24164 -13.97572 -13.65148 -13.55188 -13.18927 -13.07403 -12.89363 -12.71080 -12.32354 -12.21092 -12.10834 -12.03307 -11.99423 -11.57842 -11.37231 -11.14414 -11.07078 -10.79232 -10.54475 -9.97382 -9.88147 -9.69304 -9.31301 -8.17954 -6.35218 -0.82052 0.39012 0.48307 0.94101 1.29268 1.43199 1.44505 1.54272 1.69500 2.29301 2.42324 2.67225 2.84218 3.00969 3.11954 3.32526 3.58750 3.75504 3.88292 4.01317 4.10861 4.11302 4.21625 4.31993 4.40005 4.49500 4.50295 4.58716 4.60732 4.66773 4.76525 4.96714 5.05071 5.14707 5.21127 5.26810 5.39829 5.43514 5.54183 5.55102 5.57736 5.58592 5.60907 5.79315 5.90365 6.02517 6.16842 6.64647 6.69490 6.73205 6.89418 7.31301 7.50476 8.87128 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.023551 B = 0.002239 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1188.637804 B =12501.531187 C =12843.076162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.119 4.119 3 C 0.279 3.721 4 H -0.011 1.011 5 C -0.548 4.548 6 H 0.074 0.926 7 C 0.014 3.986 8 N -0.915 5.915 9 Si 0.968 3.032 10 H -0.283 1.283 11 H -0.284 1.284 12 H -0.257 1.257 13 N -0.696 5.696 14 C 0.485 3.515 15 O -0.583 6.583 16 C 0.074 3.926 17 N -0.503 5.503 18 C 0.398 3.602 19 N -0.546 5.546 20 C 0.232 3.768 21 C -0.087 4.087 22 C -0.102 4.102 23 C -0.131 4.131 24 C -0.098 4.098 25 C -0.132 4.132 26 C -0.080 4.080 27 C -0.315 4.315 28 C 0.513 3.487 29 O -0.586 6.586 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.015 0.985 33 H 0.050 0.950 34 H 0.067 0.933 35 H 0.264 0.736 36 H 0.409 0.591 37 H 0.131 0.869 38 H 0.189 0.811 39 H 0.254 0.746 40 H 0.130 0.870 41 H 0.150 0.850 42 H 0.154 0.846 43 H 0.152 0.848 44 H 0.138 0.862 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.450 5.931 -16.569 26.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.158 4.158 3 C 0.176 3.824 4 H 0.007 0.993 5 C -0.586 4.586 6 H 0.092 0.908 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.793 3.207 10 H -0.210 1.210 11 H -0.209 1.209 12 H -0.181 1.181 13 N -0.345 5.345 14 C 0.270 3.730 15 O -0.464 6.464 16 C -0.052 4.052 17 N -0.217 5.217 18 C 0.115 3.885 19 N -0.267 5.267 20 C 0.112 3.888 21 C -0.088 4.088 22 C -0.121 4.121 23 C -0.148 4.148 24 C -0.116 4.116 25 C -0.150 4.150 26 C -0.098 4.098 27 C -0.339 4.339 28 C 0.315 3.685 29 O -0.469 6.469 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.086 0.914 35 H 0.073 0.927 36 H 0.245 0.755 37 H 0.149 0.851 38 H 0.206 0.794 39 H 0.270 0.730 40 H 0.147 0.853 41 H 0.167 0.833 42 H 0.172 0.828 43 H 0.169 0.831 44 H 0.156 0.844 45 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges -20.056 5.882 -15.707 26.145 hybrid contribution 2.193 0.620 0.938 2.464 sum -17.863 6.502 -14.769 24.073 Atomic orbital electron populations 1.21657 0.96763 0.99232 1.00164 1.21755 0.93877 0.98591 1.01599 1.18358 0.93545 0.89406 0.81101 0.99343 1.21602 0.91511 1.38709 1.06755 0.90819 1.25770 1.03240 0.94490 0.95114 1.70054 1.37034 1.38414 1.09874 0.85399 0.79287 0.77226 0.78751 1.20950 1.20946 1.18077 1.46131 1.15072 1.55518 1.17809 1.21187 0.82620 0.78915 0.90269 1.90732 1.52764 1.60801 1.42074 1.22154 0.82747 1.02779 0.97474 1.46359 1.09923 1.14073 1.51372 1.25878 0.80452 0.97136 0.84999 1.68403 1.18477 1.15222 1.24616 1.20224 0.93635 0.88148 0.86749 1.18594 0.89662 0.95734 1.04808 1.21514 0.98492 0.94504 0.97569 1.21415 0.91657 1.01386 1.00386 1.21757 1.00604 0.93545 0.95732 1.21512 0.96499 0.97034 0.99938 1.21529 0.92147 0.99778 0.96355 1.23026 0.90300 1.04824 1.15728 1.17370 0.91303 0.81239 0.78571 1.90929 1.44952 1.57972 1.53044 0.92865 0.93371 0.96603 0.93128 0.91449 0.92678 0.75504 0.85126 0.79391 0.73046 0.85253 0.83263 0.82820 0.83053 0.84372 0.82548 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.52 71.98 0.61 -4.44 16 2 C -0.12 -5.55 5.45 30.60 0.17 -5.39 16 3 C 0.28 13.85 2.24 44.25 0.10 13.95 16 4 H -0.01 -0.70 7.58 -2.39 -0.02 -0.71 16 5 C -0.55 -28.36 8.73 25.60 0.22 -28.14 16 6 H 0.07 3.55 7.74 -2.91 -0.02 3.52 16 7 C 0.01 0.75 5.29 84.65 0.45 1.19 16 8 N -0.92 -52.33 11.29 21.45 0.24 -52.09 16 9 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 10 H -0.28 -12.37 7.11 99.48 0.71 -11.67 16 11 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 12 H -0.26 -10.37 7.11 99.48 0.71 -9.66 16 13 N -0.70 -26.03 5.02 -446.09 -2.24 -28.27 16 14 C 0.48 17.22 6.47 87.66 0.57 17.78 16 15 O -0.58 -26.63 13.57 -3.03 -0.04 -26.67 16 16 C 0.07 1.67 5.84 85.63 0.50 2.17 16 17 N -0.50 -13.20 2.06 -659.67 -1.36 -14.55 16 18 C 0.40 8.02 11.45 180.36 2.07 10.09 16 19 N -0.55 -12.78 9.53 -188.08 -1.79 -14.57 16 20 C 0.23 6.07 6.75 41.43 0.28 6.35 16 21 C -0.09 -1.95 5.88 -20.05 -0.12 -2.07 16 22 C -0.10 -1.97 9.43 22.51 0.21 -1.76 16 23 C -0.13 -1.87 10.03 22.24 0.22 -1.64 16 24 C -0.10 -1.19 10.04 22.32 0.22 -0.97 16 25 C -0.13 -1.81 10.03 22.24 0.22 -1.59 16 26 C -0.08 -1.49 9.59 22.50 0.22 -1.27 16 27 C -0.31 -9.41 9.47 22.91 0.22 -9.20 16 28 C 0.51 17.58 7.43 84.81 0.63 18.21 16 29 O -0.59 -24.86 16.76 -5.40 -0.09 -24.95 16 30 H 0.05 2.00 5.64 -2.39 -0.01 1.98 16 31 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 32 H 0.01 0.73 7.85 -2.39 -0.02 0.71 16 33 H 0.05 2.14 8.14 -2.38 -0.02 2.12 16 34 H 0.07 3.62 5.95 -2.39 -0.01 3.60 16 35 H 0.26 14.37 8.31 -92.71 -0.77 13.60 16 36 H 0.41 12.16 8.54 -92.71 -0.79 11.36 16 37 H 0.13 3.03 7.44 -2.39 -0.02 3.01 16 38 H 0.19 1.72 8.00 -2.39 -0.02 1.71 16 39 H 0.25 2.27 8.01 -2.91 -0.02 2.25 16 40 H 0.13 2.37 6.24 -2.91 -0.02 2.35 16 41 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 42 H 0.15 0.92 8.06 -2.91 -0.02 0.90 16 43 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 44 H 0.14 2.47 7.56 -2.91 -0.02 2.44 16 45 H 0.16 4.33 6.26 -2.91 -0.02 4.32 16 Total: -1.00 -82.92 377.28 3.78 -79.14 By element: Atomic # 1 Polarization: 24.46 SS G_CDS: 0.24 Total: 24.70 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 6.79 Total: 13.30 kcal Atomic # 7 Polarization: -104.34 SS G_CDS: -5.15 Total: -109.48 kcal Atomic # 8 Polarization: -51.49 SS G_CDS: -0.13 Total: -51.62 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -82.92 3.78 -79.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000935401395.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.968 kcal (2) G-P(sol) polarization free energy of solvation -82.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds