Wall clock time and date at job start Sat Apr 11 2020 06:19:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47523 * 2 1 4 4 H 1.09002 * 109.46870 * 305.40624 * 3 2 1 5 5 C 1.50697 * 109.47458 * 185.40687 * 3 2 1 6 6 H 1.08006 * 119.99993 * 244.73730 * 5 3 2 7 7 C 1.37876 * 120.00329 * 64.73174 * 5 3 2 8 8 N 1.31514 * 120.00396 * 187.25917 * 7 5 3 9 9 Si 1.86806 * 119.99749 * 7.26776 * 7 5 3 10 10 H 1.48507 * 109.46731 * 269.99746 * 9 7 5 11 11 H 1.48501 * 109.47091 * 29.99201 * 9 7 5 12 12 H 1.48493 * 109.47250 * 149.99769 * 9 7 5 13 13 N 1.46502 * 109.47201 * 65.40509 * 3 2 1 14 14 C 1.34780 * 119.99732 * 275.00452 * 13 3 2 15 15 O 1.21574 * 120.00451 * 359.97438 * 14 13 3 16 16 C 1.47663 * 119.99885 * 179.97438 * 14 13 3 17 17 C 1.40301 * 119.91212 * 359.72577 * 16 14 13 18 18 C 1.36244 * 120.56570 * 179.71708 * 17 16 14 19 19 C 1.39361 * 120.38206 * 0.55566 * 18 17 16 20 20 N 1.37612 * 132.65687 * 179.74071 * 19 18 17 21 21 H 0.97004 * 125.63790 * 0.04813 * 20 19 18 22 22 C 1.36879 * 108.73532 * 180.02562 * 20 19 18 23 23 C 1.37024 * 109.22374 * 0.04283 * 22 20 19 24 24 C 1.40569 * 107.80062 * 359.89931 * 23 22 20 25 25 C 1.38891 * 119.91546 * 179.97438 * 16 14 13 26 26 C 1.50581 * 121.73863 * 179.78280 * 23 22 20 27 27 C 1.52954 * 108.81271 * 330.81877 * 26 23 22 28 28 N 1.45719 * 112.51120 * 46.06118 * 27 26 23 29 29 C 1.35273 * 122.60719 * 321.60246 * 28 27 26 30 30 O 1.21640 * 121.54158 * 187.45497 * 29 28 27 31 31 H 1.09005 * 109.47229 * 60.00026 * 1 2 3 32 32 H 1.08995 * 109.47307 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47493 * 300.00477 * 1 2 3 34 34 H 1.08999 * 109.47493 * 239.99523 * 2 1 3 35 35 H 1.09005 * 109.47229 * 119.99974 * 2 1 3 36 36 H 0.96997 * 119.99418 * 354.94858 * 8 7 5 37 37 H 0.96998 * 120.00194 * 94.99918 * 13 3 2 38 38 H 1.07998 * 119.71653 * 359.97438 * 17 16 14 39 39 H 1.07997 * 119.80517 * 180.27073 * 18 17 16 40 40 H 1.07997 * 120.18254 * 359.97438 * 25 16 14 41 41 H 1.08992 * 109.58481 * 90.62354 * 26 23 22 42 42 H 1.09006 * 109.57876 * 210.88797 * 26 23 22 43 43 H 1.08997 * 108.87596 * 166.83972 * 27 26 23 44 44 H 1.08998 * 108.87575 * 285.38674 * 27 26 23 45 45 H 0.97001 * 118.69617 * 141.59644 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5998 1.9835 -0.8376 5 6 3.5410 1.4445 -0.1339 6 1 4.1546 1.8177 0.6728 7 6 4.1311 0.9700 -1.2861 8 7 5.4381 0.8380 -1.3493 9 14 3.0741 0.5148 -2.7575 10 1 2.6850 -0.9154 -2.6639 11 1 1.8532 1.3600 -2.7704 12 1 3.8437 0.7376 -4.0077 13 7 1.6609 2.0945 1.2559 14 6 0.4443 2.6612 1.3805 15 8 -0.3382 2.6316 0.4505 16 6 0.0619 3.3179 2.6465 17 6 0.9642 3.3460 3.7205 18 6 0.6274 3.9533 4.8927 19 6 -0.6246 4.5460 5.0451 20 7 -1.2210 5.2092 6.0931 21 1 -0.8174 5.3763 6.9592 22 6 -2.4777 5.5946 5.7113 23 6 -2.7031 5.1859 4.4230 24 6 -1.5483 4.5215 3.9747 25 6 -1.1920 3.9018 2.7728 26 6 -4.0069 5.4605 3.7215 27 6 -5.1241 5.5243 4.7642 28 7 -4.7625 6.3337 5.9206 29 6 -3.5188 6.3302 6.4526 30 8 -3.2707 6.9072 7.4943 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0276 0.0005 33 1 -0.3634 0.5139 0.8899 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 5.9924 1.1426 -0.6139 37 1 2.2853 2.1184 1.9978 38 1 1.9356 2.8858 3.6158 39 1 1.3331 3.9714 5.7100 40 1 -1.8880 3.8771 1.9474 41 1 -3.9446 6.4124 3.1941 42 1 -4.2140 4.6615 3.0096 43 1 -6.0148 5.9490 4.3011 44 1 -5.3505 4.5126 5.1007 45 1 -5.4405 6.8975 6.3249 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157284873.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:45 Heat of formation + Delta-G solvation = -20.562502 kcal Electronic energy + Delta-G solvation = -28908.602577 eV Core-core repulsion = 24890.798576 eV Total energy + Delta-G solvation = -4017.804001 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.16700 -39.86302 -39.15329 -36.87541 -36.48251 -35.23014 -33.00762 -32.45145 -31.61056 -30.66622 -29.69195 -28.96139 -27.21672 -24.57030 -24.04957 -23.35443 -22.27714 -21.14967 -20.60981 -19.55329 -19.24350 -18.31868 -18.10336 -17.38257 -16.96812 -16.52619 -16.04882 -15.66531 -15.28496 -14.94745 -14.69424 -14.44090 -14.30073 -14.18874 -13.87348 -13.77741 -13.27071 -12.94970 -12.81368 -12.59861 -12.51677 -12.37415 -12.26339 -12.02198 -11.88662 -11.44625 -11.10161 -10.92684 -10.69438 -10.58654 -10.46203 -10.02971 -9.80631 -9.70626 -9.61380 -9.27460 -8.89263 -8.52239 -8.50305 -8.08473 -7.90719 -6.56094 -4.23859 0.44750 1.06287 1.76047 2.26472 2.86705 3.02762 3.19398 3.36068 3.45720 3.59504 3.88988 4.07034 4.10024 4.25998 4.28906 4.40941 4.46092 4.72992 4.83858 4.98125 5.05199 5.19314 5.22290 5.26105 5.28340 5.42075 5.48249 5.57527 5.88981 6.03576 6.06104 6.07561 6.17404 6.24078 6.30680 6.38343 6.40036 6.60913 6.69894 6.75344 6.79139 6.90683 7.02401 7.05954 7.34423 7.37969 7.63913 7.64878 8.22183 8.46367 8.69306 8.96808 9.46656 10.84492 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.024612 B = 0.002406 C = 0.002262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.385068 B =11635.038189 C =12373.668318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.137 4.137 3 C 0.241 3.759 4 H 0.050 0.950 5 C -0.609 4.609 6 H 0.062 0.938 7 C 0.036 3.964 8 N -0.905 5.905 9 Si 1.048 2.952 10 H -0.280 1.280 11 H -0.272 1.272 12 H -0.288 1.288 13 N -0.696 5.696 14 C 0.547 3.453 15 O -0.549 6.549 16 C -0.149 4.149 17 C -0.056 4.056 18 C -0.136 4.136 19 C 0.124 3.876 20 N -0.546 5.546 21 H 0.425 0.575 22 C -0.002 4.002 23 C -0.101 4.101 24 C -0.112 4.112 25 C -0.001 4.001 26 C -0.073 4.073 27 C 0.114 3.886 28 N -0.719 5.719 29 C 0.597 3.403 30 O -0.537 6.537 31 H 0.052 0.948 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.059 0.941 35 H 0.054 0.946 36 H 0.268 0.732 37 H 0.391 0.609 38 H 0.135 0.865 39 H 0.128 0.872 40 H 0.140 0.860 41 H 0.087 0.913 42 H 0.102 0.898 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.572 8.379 14.506 25.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.175 4.175 3 C 0.138 3.862 4 H 0.068 0.932 5 C -0.648 4.648 6 H 0.080 0.920 7 C -0.170 4.170 8 N -0.538 5.538 9 Si 0.877 3.123 10 H -0.207 1.207 11 H -0.198 1.198 12 H -0.214 1.214 13 N -0.343 5.343 14 C 0.334 3.666 15 O -0.429 6.429 16 C -0.154 4.154 17 C -0.076 4.076 18 C -0.156 4.156 19 C 0.012 3.988 20 N -0.146 5.146 21 H 0.263 0.737 22 C -0.114 4.114 23 C -0.111 4.111 24 C -0.116 4.116 25 C -0.020 4.020 26 C -0.111 4.111 27 C -0.010 4.010 28 N -0.372 5.372 29 C 0.385 3.615 30 O -0.414 6.414 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.078 0.922 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.225 0.775 38 H 0.153 0.847 39 H 0.146 0.854 40 H 0.158 0.842 41 H 0.105 0.895 42 H 0.120 0.880 43 H 0.111 0.889 44 H 0.088 0.912 45 H 0.245 0.755 Dipole moment (debyes) X Y Z Total from point charges -19.719 7.913 12.903 24.859 hybrid contribution 0.475 0.885 2.615 2.802 sum -19.244 8.798 15.519 26.241 Atomic orbital electron populations 1.21898 0.97117 0.98990 1.02237 1.22251 0.94078 0.99852 1.01369 1.19267 0.95908 0.88554 0.82502 0.93219 1.22162 0.89704 1.48110 1.04783 0.92019 1.25698 0.97491 0.93589 1.00228 1.70837 1.04429 1.42514 1.36054 0.83951 0.75363 0.77196 0.75786 1.20699 1.19782 1.21437 1.46184 1.14430 1.55620 1.18081 1.18075 0.82774 0.79000 0.86800 1.90728 1.51213 1.60440 1.40534 1.19945 0.95573 1.04398 0.95444 1.20836 0.99034 0.96265 0.91457 1.19665 0.93878 1.02700 0.99378 1.18584 0.95029 0.97740 0.87409 1.41190 1.11869 1.47095 1.14411 0.73679 1.19748 0.87978 1.07747 0.95928 1.19636 0.96025 1.01898 0.93510 1.17608 0.94220 1.05138 0.94664 1.20759 0.94960 0.91353 0.94967 1.20423 0.89484 1.03969 0.97260 1.21342 0.97837 0.96008 0.85831 1.45479 1.11224 1.47738 1.32784 1.17242 0.82092 0.79256 0.82959 1.90878 1.81814 1.46201 1.22535 0.92848 0.94993 0.93034 0.92222 0.92731 0.92158 0.77470 0.84730 0.85422 0.84208 0.89473 0.88004 0.88919 0.91221 0.75540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.52 37.15 0.32 -2.54 16 2 C -0.14 -2.98 5.20 -26.74 -0.14 -3.12 16 3 C 0.24 5.65 1.81 -69.08 -0.13 5.52 16 4 H 0.05 1.28 6.07 -51.93 -0.32 0.97 16 5 C -0.61 -16.20 9.09 -34.44 -0.31 -16.52 16 6 H 0.06 1.71 7.95 -52.48 -0.42 1.29 16 7 C 0.04 1.00 5.42 -17.82 -0.10 0.90 16 8 N -0.90 -26.84 13.70 55.43 0.76 -26.08 16 9 Si 1.05 25.16 25.39 -169.99 -4.32 20.85 16 10 H -0.28 -6.37 6.73 56.52 0.38 -5.99 16 11 H -0.27 -6.31 6.38 56.52 0.36 -5.95 16 12 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 13 N -0.70 -13.70 4.97 -55.93 -0.28 -13.98 16 14 C 0.55 10.25 6.35 -12.41 -0.08 10.17 16 15 O -0.55 -11.73 13.45 5.30 0.07 -11.66 16 16 C -0.15 -2.23 5.87 -105.03 -0.62 -2.85 16 17 C -0.06 -0.70 9.46 -39.52 -0.37 -1.07 16 18 C -0.14 -1.47 9.99 -39.88 -0.40 -1.87 16 19 C 0.12 1.43 7.24 -83.65 -0.61 0.82 16 20 N -0.55 -5.60 6.15 -7.06 -0.04 -5.65 16 21 H 0.42 3.47 8.96 -40.82 -0.37 3.11 16 22 C 0.00 -0.02 7.17 -82.30 -0.59 -0.61 16 23 C -0.10 -1.03 6.07 -104.24 -0.63 -1.67 16 24 C -0.11 -1.36 6.16 -107.21 -0.66 -2.02 16 25 C 0.00 -0.01 9.64 -38.74 -0.37 -0.38 16 26 C -0.07 -0.47 6.45 -27.97 -0.18 -0.65 16 27 C 0.11 0.51 6.98 -4.49 -0.03 0.48 16 28 N -0.72 -4.71 5.53 -61.79 -0.34 -5.05 16 29 C 0.60 6.21 8.01 -12.28 -0.10 6.11 16 30 O -0.54 -7.22 18.00 5.24 0.09 -7.13 16 31 H 0.05 1.09 7.87 -51.93 -0.41 0.68 16 32 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.05 1.01 5.64 -51.93 -0.29 0.71 16 34 H 0.06 1.35 4.43 -51.93 -0.23 1.12 16 35 H 0.05 1.15 8.14 -51.93 -0.42 0.72 16 36 H 0.27 7.87 8.72 -40.82 -0.36 7.51 16 37 H 0.39 6.82 6.53 -40.82 -0.27 6.56 16 38 H 0.13 1.51 6.36 -52.49 -0.33 1.18 16 39 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 40 H 0.14 1.84 7.62 -52.49 -0.40 1.44 16 41 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.09 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.41 1.89 8.91 -40.82 -0.36 1.53 16 LS Contribution 362.83 15.07 5.47 5.47 Total: -1.00 -34.43 362.83 -9.15 -43.58 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -5.57 Total: 8.95 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -5.00 Total: -9.30 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: 0.10 Total: -50.76 kcal Atomic # 8 Polarization: -18.95 SS G_CDS: 0.17 Total: -18.79 kcal Atomic # 14 Polarization: 25.16 SS G_CDS: -4.32 Total: 20.85 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -34.43 -9.15 -43.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157284873.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.015 kcal (2) G-P(sol) polarization free energy of solvation -34.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.578 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds