Wall clock time and date at job start Sat Apr 11 2020 06:19:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47082 * 2 1 4 4 N 1.46505 * 109.47446 * 119.99452 * 2 1 3 5 5 C 1.34773 * 119.99598 * 84.99918 * 4 2 1 6 6 O 1.21283 * 120.00221 * 0.02562 * 5 4 2 7 7 C 1.50705 * 120.00045 * 180.02562 * 5 4 2 8 8 O 1.42906 * 109.47121 * 180.02562 * 7 5 4 9 9 C 1.35900 * 116.99733 * 180.02562 * 8 7 5 10 10 C 1.38920 * 119.98239 * 0.02562 * 9 8 7 11 11 C 1.38285 * 120.25785 * 179.97438 * 10 9 8 12 12 C 1.37973 * 120.20934 * 359.78464 * 11 10 9 13 13 C 1.39697 * 119.95430 * 0.44311 * 12 11 10 14 14 C 1.47804 * 120.12412 * 179.80893 * 13 12 11 15 15 N 1.32852 * 120.24516 * 43.84519 * 14 13 12 16 16 C 1.32008 * 120.07810 * 179.97438 * 15 14 13 17 17 C 1.39204 * 120.58717 * 359.96996 * 16 15 14 18 18 N 1.31605 * 120.50301 * 0.02622 * 17 16 15 19 19 C 1.33979 * 119.89613 * 0.02562 * 18 17 16 20 20 C 1.40805 * 120.28087 * 180.02562 * 19 18 17 21 21 H 1.08001 * 119.99443 * 190.23091 * 20 19 18 22 22 C 1.40168 * 120.00141 * 10.22773 * 20 19 18 23 23 N 1.30682 * 120.00373 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99807 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47174 * 359.97438 * 24 22 20 26 26 H 1.48503 * 109.47185 * 119.99789 * 24 22 20 27 27 H 1.48501 * 109.46870 * 239.99618 * 24 22 20 28 28 C 1.38393 * 119.97770 * 179.97438 * 9 8 7 29 29 H 1.08999 * 109.47520 * 60.00092 * 1 2 3 30 30 H 1.09000 * 109.46871 * 180.02562 * 1 2 3 31 31 H 1.09008 * 109.47195 * 299.99909 * 1 2 3 32 32 H 1.08995 * 109.47445 * 240.00100 * 2 1 3 33 33 H 1.09002 * 109.47534 * 180.02562 * 3 2 1 34 34 H 1.09005 * 109.46892 * 299.99868 * 3 2 1 35 35 H 1.09000 * 109.47323 * 59.99938 * 3 2 1 36 36 H 0.96991 * 120.00228 * 265.00763 * 4 2 1 37 37 H 1.08999 * 109.46774 * 60.00555 * 7 5 4 38 38 H 1.08999 * 109.46606 * 300.00356 * 7 5 4 39 39 H 1.07998 * 119.86909 * 359.97438 * 10 9 8 40 40 H 1.07997 * 119.90165 * 180.02562 * 11 10 9 41 41 H 1.08004 * 120.02263 * 180.23461 * 12 11 10 42 42 H 1.08001 * 119.70927 * 180.02562 * 16 15 14 43 43 H 1.08002 * 119.74700 * 179.74620 * 17 16 15 44 44 H 0.96998 * 120.00064 * 180.02562 * 23 22 20 45 45 H 1.07997 * 120.10843 * 359.97438 * 28 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0184 -0.6905 1.1963 5 6 2.1471 -2.0321 1.1945 6 8 1.8590 -2.6677 0.2025 7 6 2.6490 -2.7425 2.4252 8 8 2.6977 -4.1490 2.1767 9 6 3.1313 -4.9403 3.1929 10 6 3.5019 -4.3725 4.4054 11 6 3.9435 -5.1724 5.4434 12 6 4.0148 -6.5409 5.2833 13 6 3.6489 -7.1208 4.0662 14 6 3.7279 -8.5861 3.8892 15 7 3.2917 -9.4000 4.8444 16 6 3.3634 -10.7082 4.6826 17 6 3.8935 -11.2495 3.5149 18 7 4.3322 -10.4646 2.5538 19 6 4.2699 -9.1340 2.6976 20 6 4.7363 -8.2867 1.6744 21 1 4.8389 -7.2270 1.8557 22 6 5.0677 -8.8186 0.4205 23 7 4.9432 -10.1008 0.2010 24 14 5.6872 -7.6945 -0.9367 25 1 5.7367 -6.2967 -0.4377 26 1 7.0480 -8.1214 -1.3504 27 1 4.7688 -7.7718 -2.1011 28 6 3.2024 -6.3115 3.0195 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8901 32 1 1.8933 -0.5138 -0.8899 33 1 3.1299 1.4426 -0.0005 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 2.2490 -0.1822 1.9895 37 1 1.9760 -2.5437 3.2593 38 1 3.6480 -2.3824 2.6705 39 1 3.4449 -3.3022 4.5378 40 1 4.2297 -4.7249 6.3837 41 1 4.3565 -7.1631 6.0973 42 1 3.0067 -11.3643 5.4628 43 1 3.9494 -12.3218 3.3985 44 1 5.1728 -10.4689 -0.6665 45 1 2.9134 -6.7542 2.0778 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001243886806.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:19:50 Heat of formation + Delta-G solvation = -9.577862 kcal Electronic energy + Delta-G solvation = -28552.218992 eV Core-core repulsion = 24534.891320 eV Total energy + Delta-G solvation = -4017.327672 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.153 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.30684 -39.47813 -38.78775 -36.86065 -36.03652 -34.17682 -32.40109 -32.13827 -31.41218 -29.99574 -28.65262 -27.78927 -27.59164 -26.17135 -23.49515 -22.31659 -22.01951 -21.53707 -20.86434 -20.28590 -17.98083 -17.67680 -17.14900 -16.50820 -16.26471 -16.04520 -15.44928 -15.28346 -14.86478 -14.79938 -14.70963 -14.17973 -14.08631 -13.77277 -13.36823 -13.25013 -12.85929 -12.77872 -12.71941 -12.53907 -12.41565 -12.15621 -11.87458 -11.73374 -11.48841 -11.37890 -11.32508 -11.04098 -10.90649 -10.72693 -10.44412 -10.18133 -9.91724 -9.83147 -9.59323 -9.40039 -9.22309 -8.43829 -7.78837 -7.58555 -7.40177 -6.62057 -4.73226 1.67888 2.04058 2.43787 2.48953 2.55191 2.96795 3.04839 3.12239 3.18139 3.71324 3.84302 4.37959 4.38887 4.58863 4.59578 4.67908 4.86784 4.88812 4.98438 5.19176 5.27089 5.30020 5.31463 5.40708 5.55634 5.55958 5.64975 5.73422 5.89151 5.92443 5.94224 5.99307 6.17274 6.19988 6.27976 6.43579 6.60930 6.72378 6.80604 6.91906 6.99438 7.01331 7.16782 7.30233 7.44283 7.62262 7.82460 8.01606 8.02482 8.31969 8.58563 9.16286 9.75386 10.02627 Molecular weight = 341.15amu Principal moments of inertia in cm(-1) A = 0.011817 B = 0.003047 C = 0.002573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2368.957024 B = 9186.122756 C =10878.466000 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.137 3.863 3 C -0.160 4.160 4 N -0.729 5.729 5 C 0.515 3.485 6 O -0.509 6.509 7 C 0.044 3.956 8 O -0.291 6.291 9 C 0.117 3.883 10 C -0.230 4.230 11 C -0.089 4.089 12 C -0.141 4.141 13 C 0.069 3.931 14 C -0.038 4.038 15 N -0.408 5.408 16 C -0.119 4.119 17 C 0.090 3.910 18 N -0.452 5.452 19 C 0.221 3.779 20 C -0.398 4.398 21 H 0.103 0.897 22 C 0.067 3.933 23 N -0.704 5.704 24 Si 0.907 3.093 25 H -0.252 1.252 26 H -0.270 1.270 27 H -0.268 1.268 28 C -0.128 4.128 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.056 0.944 32 H 0.089 0.911 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.400 0.600 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.129 0.871 43 H 0.131 0.869 44 H 0.280 0.720 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.158 19.869 1.955 20.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.033 3.967 3 C -0.218 4.218 4 N -0.384 5.384 5 C 0.300 3.700 6 O -0.382 6.382 7 C -0.036 4.036 8 O -0.204 6.204 9 C 0.072 3.928 10 C -0.249 4.249 11 C -0.107 4.107 12 C -0.161 4.161 13 C 0.067 3.933 14 C -0.184 4.184 15 N -0.120 5.120 16 C -0.281 4.281 17 C -0.082 4.082 18 N -0.168 5.168 19 C 0.097 3.903 20 C -0.428 4.428 21 H 0.120 0.880 22 C -0.161 4.161 23 N -0.323 5.323 24 Si 0.730 3.270 25 H -0.175 1.175 26 H -0.195 1.195 27 H -0.193 1.193 28 C -0.148 4.148 29 H 0.084 0.916 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.107 0.893 33 H 0.081 0.919 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.234 0.766 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.134 0.866 41 H 0.138 0.862 42 H 0.146 0.854 43 H 0.149 0.851 44 H 0.091 0.909 45 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.391 19.137 0.796 19.451 hybrid contribution 0.404 0.649 0.084 0.769 sum -2.987 19.786 0.880 20.029 Atomic orbital electron populations 1.22202 0.95166 1.02925 1.02057 1.20948 0.94275 0.92732 0.88739 1.22077 1.01813 0.94900 1.02969 1.45949 1.68861 1.06438 1.17131 1.20239 0.78098 0.82332 0.89354 1.90777 1.47528 1.65566 1.34373 1.22325 1.02472 0.82534 0.96223 1.86165 1.81923 1.15168 1.37121 1.18811 0.96793 0.90528 0.86635 1.20998 1.10278 0.99358 0.94234 1.20676 0.98845 0.93493 0.97698 1.21178 1.03159 0.94130 0.97585 1.18083 0.92617 0.90937 0.91671 1.20024 1.11636 0.91360 0.95407 1.67653 1.10902 1.04464 1.28960 1.22557 1.13763 0.91534 1.00217 1.23552 0.93699 0.99960 0.90957 1.69529 1.17386 1.03496 1.26427 1.19219 0.90326 0.89786 0.90974 1.19991 1.32741 0.96098 0.93980 0.87964 1.26212 0.94158 0.95464 1.00296 1.70036 1.27230 1.12411 1.22658 0.86227 0.79077 0.81557 0.80158 1.17547 1.19473 1.19278 1.20689 1.03441 0.89341 1.01311 0.91561 0.91854 0.92463 0.89254 0.91869 0.90836 0.92019 0.76611 0.89292 0.89248 0.86593 0.86550 0.86245 0.85351 0.85149 0.90905 0.83988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.28 9.48 37.15 0.35 -0.93 16 2 C 0.14 1.09 3.18 -67.93 -0.22 0.88 16 3 C -0.16 -0.79 9.38 37.16 0.35 -0.44 16 4 N -0.73 -6.06 5.08 -53.81 -0.27 -6.33 16 5 C 0.51 6.59 7.87 -10.98 -0.09 6.50 16 6 O -0.51 -9.15 16.16 -14.35 -0.23 -9.38 16 7 C 0.04 0.52 5.22 36.01 0.19 0.71 16 8 O -0.29 -5.18 9.67 -39.33 -0.38 -5.56 16 9 C 0.12 2.15 6.68 -39.27 -0.26 1.89 16 10 C -0.23 -3.53 9.04 -39.31 -0.36 -3.88 16 11 C -0.09 -1.41 10.03 -39.66 -0.40 -1.81 16 12 C -0.14 -2.73 9.67 -39.13 -0.38 -3.11 16 13 C 0.07 1.54 5.28 -104.92 -0.55 0.98 16 14 C -0.04 -0.97 6.42 -82.11 -0.53 -1.49 16 15 N -0.41 -10.08 10.30 -8.97 -0.09 -10.17 16 16 C -0.12 -2.73 11.22 -17.12 -0.19 -2.92 16 17 C 0.09 2.14 11.22 -17.29 -0.19 1.95 16 18 N -0.45 -12.26 8.12 -10.72 -0.09 -12.34 16 19 C 0.22 5.99 6.51 -84.55 -0.55 5.44 16 20 C -0.40 -10.40 7.45 -37.89 -0.28 -10.68 16 21 H 0.10 2.56 5.37 -52.49 -0.28 2.28 16 22 C 0.07 1.66 5.49 -17.32 -0.10 1.56 16 23 N -0.70 -18.18 11.54 55.56 0.64 -17.54 16 24 Si 0.91 18.80 29.56 -169.99 -5.03 13.77 16 25 H -0.25 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.27 -5.41 7.11 56.52 0.40 -5.00 16 27 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 28 C -0.13 -2.77 7.48 -39.00 -0.29 -3.06 16 29 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.37 8.14 -51.92 -0.42 -0.05 16 32 H 0.09 0.91 7.58 -51.93 -0.39 0.52 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 36 H 0.40 1.94 8.60 -40.82 -0.35 1.59 16 37 H 0.09 0.82 7.65 -51.93 -0.40 0.42 16 38 H 0.09 0.84 7.66 -51.93 -0.40 0.45 16 39 H 0.12 1.32 6.28 -52.49 -0.33 0.99 16 40 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 41 H 0.12 2.27 8.06 -52.48 -0.42 1.85 16 42 H 0.13 2.51 8.06 -52.49 -0.42 2.09 16 43 H 0.13 2.63 8.06 -52.49 -0.42 2.20 16 44 H 0.28 6.49 8.29 -40.82 -0.34 6.15 16 45 H 0.14 3.32 6.73 -52.49 -0.35 2.97 16 LS Contribution 382.61 15.07 5.77 5.77 Total: -1.00 -33.82 382.61 -9.04 -42.86 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -5.87 Total: 7.35 kcal Atomic # 6 Polarization: -4.93 SS G_CDS: -3.49 Total: -8.42 kcal Atomic # 7 Polarization: -46.58 SS G_CDS: 0.19 Total: -46.39 kcal Atomic # 8 Polarization: -14.33 SS G_CDS: -0.61 Total: -14.94 kcal Atomic # 14 Polarization: 18.80 SS G_CDS: -5.03 Total: 13.77 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.82 -9.04 -42.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001243886806.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.280 kcal (2) G-P(sol) polarization free energy of solvation -33.815 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds